data_YA6 # _chem_comp.id YA6 _chem_comp.name "N-{(4P)-4-[(4P)-5-{3-[(8-fluoro-11-oxo-5,11-dihydro-10H-dibenzo[b,e][1,4]diazepin-10-yl)methyl]phenyl}-2-(methylsulfanyl)-1H-imidazol-4-yl]pyridin-2-yl}acetamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C31 H25 F N6 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-01-19 _chem_comp.pdbx_modified_date 2024-01-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 564.633 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YA6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8FV3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YA6 C01 C1 C 0 1 N N N N N N 34.892 16.352 35.879 -5.621 -3.960 1.885 C01 YA6 1 YA6 C03 C2 C 0 1 Y N N N N N 35.388 14.687 33.494 -3.322 -3.424 0.499 C03 YA6 2 YA6 C05 C3 C 0 1 Y N N N N N 35.941 15.388 31.539 -1.880 -2.227 -0.668 C05 YA6 3 YA6 C06 C4 C 0 1 Y N N N N N 36.436 16.365 30.457 -0.693 -1.804 -1.435 C06 YA6 4 YA6 C07 C5 C 0 1 Y N N N N N 37.551 17.146 30.727 -0.050 -0.602 -1.127 C07 YA6 5 YA6 C08 C6 C 0 1 Y N N N N N 37.993 18.036 29.764 1.059 -0.213 -1.848 C08 YA6 6 YA6 C09 C7 C 0 1 N N N N N N 39.217 18.934 29.964 1.754 1.083 -1.518 C09 YA6 7 YA6 C11 C8 C 0 1 Y N N N N N 41.233 18.343 31.181 2.557 0.760 0.754 C11 YA6 8 YA6 C12 C9 C 0 1 Y N N N N N 41.360 17.225 30.332 1.642 1.667 1.277 C12 YA6 9 YA6 C13 C10 C 0 1 Y N N N N N 42.586 16.594 30.214 1.289 1.608 2.614 C13 YA6 10 YA6 C15 C11 C 0 1 Y N N N N N 43.698 17.069 30.935 1.843 0.644 3.437 C15 YA6 11 YA6 C16 C12 C 0 1 Y N N N N N 43.581 18.173 31.771 2.763 -0.254 2.927 C16 YA6 12 YA6 C17 C13 C 0 1 Y N N N N N 42.320 18.813 31.874 3.134 -0.189 1.591 C17 YA6 13 YA6 C19 C14 C 0 1 Y N N N N N 41.255 20.027 33.887 5.320 -0.525 0.640 C19 YA6 14 YA6 C20 C15 C 0 1 Y N N N N N 41.861 20.239 35.153 6.522 -0.847 1.257 C20 YA6 15 YA6 C21 C16 C 0 1 Y N N N N N 41.051 20.286 36.274 7.699 -0.271 0.822 C21 YA6 16 YA6 C22 C17 C 0 1 Y N N N N N 39.667 20.125 36.140 7.688 0.631 -0.230 C22 YA6 17 YA6 C23 C18 C 0 1 Y N N N N N 39.085 19.915 34.889 6.506 0.953 -0.861 C23 YA6 18 YA6 C24 C19 C 0 1 Y N N N N N 39.904 19.837 33.744 5.307 0.368 -0.441 C24 YA6 19 YA6 C25 C20 C 0 1 N N N N N N 39.258 19.646 32.354 4.061 0.665 -1.155 C25 YA6 20 YA6 C27 C21 C 0 1 Y N N N N N 37.329 18.146 28.562 1.536 -1.010 -2.875 C27 YA6 21 YA6 C28 C22 C 0 1 Y N N N N N 36.214 17.377 28.301 0.904 -2.201 -3.186 C28 YA6 22 YA6 C29 C23 C 0 1 Y N N N N N 35.766 16.486 29.260 -0.203 -2.605 -2.470 C29 YA6 23 YA6 C30 C24 C 0 1 Y N N N N N 35.525 14.081 31.434 -2.985 -1.457 -0.361 C30 YA6 24 YA6 C31 C25 C 0 1 Y N N N N N 35.435 13.162 30.204 -3.197 -0.042 -0.740 C31 YA6 25 YA6 C32 C26 C 0 1 Y N N N N N 36.285 13.275 29.117 -2.787 0.435 -1.992 C32 YA6 26 YA6 C33 C27 C 0 1 Y N N N N N 36.150 12.394 28.055 -3.002 1.759 -2.308 C33 YA6 27 YA6 C35 C28 C 0 1 Y N N N N N 34.398 11.301 29.070 -3.995 2.168 -0.260 C35 YA6 28 YA6 C37 C29 C 0 1 N N N N N N 32.159 10.165 29.753 -4.890 4.322 0.186 C37 YA6 29 YA6 C38 C30 C 0 1 N N N N N N 31.238 8.961 29.550 -5.464 5.329 1.149 C38 YA6 30 YA6 C40 C31 C 0 1 Y N N N N N 34.488 12.145 30.170 -3.817 0.851 0.137 C40 YA6 31 YA6 F14 F1 F 0 1 N N N N N N 42.695 15.516 29.393 0.402 2.495 3.116 F14 YA6 32 YA6 N04 N1 N 0 1 Y N N N N N 35.846 15.736 32.801 -2.109 -3.474 -0.118 N04 YA6 33 YA6 N10 N2 N 0 1 N N N N N N 39.919 18.975 31.255 2.868 0.820 -0.603 N10 YA6 34 YA6 N18 N3 N 0 1 N N N N N N 42.192 19.975 32.763 4.128 -1.056 1.117 N18 YA6 35 YA6 N34 N4 N 0 1 Y N N N N N 35.226 11.453 28.062 -3.586 2.576 -1.452 N34 YA6 36 YA6 N36 N5 N 0 1 N N N N N N 33.412 10.224 28.999 -4.612 3.071 0.604 N36 YA6 37 YA6 N41 N6 N 0 1 Y N N N N N 35.201 13.684 32.633 -3.836 -2.227 0.347 N41 YA6 38 YA6 O26 O1 O 0 1 N N N N N N 38.192 20.108 32.184 4.130 0.779 -2.364 O26 YA6 39 YA6 O39 O2 O 0 1 N N N N N N 31.831 11.009 30.506 -4.677 4.637 -0.966 O39 YA6 40 YA6 S02 S1 S 0 1 N N N N N N 35.082 14.657 35.280 -4.085 -4.760 1.358 S02 YA6 41 YA6 H1 H1 H 0 1 N N N N N N 34.706 16.340 36.963 -5.386 -3.103 2.517 H1 YA6 42 YA6 H2 H2 H 0 1 N N N N N N 35.811 16.919 35.671 -6.174 -3.624 1.008 H2 YA6 43 YA6 H3 H3 H 0 1 N N N N N N 34.043 16.829 35.367 -6.227 -4.670 2.447 H3 YA6 44 YA6 H4 H4 H 0 1 N N N N N N 38.065 17.061 31.673 -0.421 0.021 -0.327 H4 YA6 45 YA6 H5 H5 H 0 1 N N N N N N 39.959 18.624 29.213 2.135 1.535 -2.434 H5 YA6 46 YA6 H6 H6 H 0 1 N N N N N N 38.889 19.963 29.753 1.048 1.763 -1.043 H6 YA6 47 YA6 H7 H7 H 0 1 N N N N N N 40.507 16.863 29.778 1.206 2.420 0.638 H7 YA6 48 YA6 H8 H8 H 0 1 N N N N N N 44.651 16.571 30.837 1.557 0.592 4.477 H8 YA6 49 YA6 H9 H9 H 0 1 N N N N N N 44.431 18.535 32.330 3.194 -1.007 3.570 H9 YA6 50 YA6 H10 H10 H 0 1 N N N N N N 42.931 20.361 35.239 6.536 -1.549 2.077 H10 YA6 51 YA6 H11 H11 H 0 1 N N N N N N 41.485 20.446 37.250 8.632 -0.524 1.303 H11 YA6 52 YA6 H12 H12 H 0 1 N N N N N N 39.040 20.164 37.018 8.611 1.085 -0.557 H12 YA6 53 YA6 H13 H13 H 0 1 N N N N N N 38.014 19.813 34.799 6.506 1.657 -1.679 H13 YA6 54 YA6 H14 H14 H 0 1 N N N N N N 37.685 18.841 27.816 2.405 -0.700 -3.436 H14 YA6 55 YA6 H15 H15 H 0 1 N N N N N N 35.696 17.469 27.358 1.282 -2.817 -3.988 H15 YA6 56 YA6 H16 H16 H 0 1 N N N N N N 34.889 15.884 29.070 -0.695 -3.535 -2.713 H16 YA6 57 YA6 H17 H17 H 0 1 N N N N N N 37.045 14.042 29.097 -2.308 -0.225 -2.699 H17 YA6 58 YA6 H18 H18 H 0 1 N N N N N N 36.813 12.480 27.207 -2.688 2.133 -3.272 H18 YA6 59 YA6 H19 H19 H 0 1 N N N N N N 30.345 9.071 30.182 -5.620 6.276 0.633 H19 YA6 60 YA6 H20 H20 H 0 1 N N N N N N 30.935 8.905 28.494 -6.416 4.963 1.533 H20 YA6 61 YA6 H21 H21 H 0 1 N N N N N N 31.772 8.040 29.828 -4.770 5.476 1.977 H21 YA6 62 YA6 H22 H22 H 0 1 N N N N N N 33.817 12.010 31.005 -4.152 0.521 1.110 H22 YA6 63 YA6 H23 H23 H 0 1 N N N N N N 36.077 16.632 33.180 -1.517 -4.240 -0.163 H23 YA6 64 YA6 H24 H24 H 0 1 N N N N N N 42.774 20.770 32.592 3.986 -2.016 1.121 H24 YA6 65 YA6 H25 H25 H 0 1 N N N N N N 33.611 9.462 28.382 -4.842 2.800 1.507 H25 YA6 66 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YA6 C33 N34 DOUB Y N 1 YA6 C33 C32 SING Y N 2 YA6 N34 C35 SING Y N 3 YA6 C28 C27 DOUB Y N 4 YA6 C28 C29 SING Y N 5 YA6 C27 C08 SING Y N 6 YA6 N36 C35 SING N N 7 YA6 N36 C37 SING N N 8 YA6 C35 C40 DOUB Y N 9 YA6 C32 C31 DOUB Y N 10 YA6 C29 C06 DOUB Y N 11 YA6 F14 C13 SING N N 12 YA6 C38 C37 SING N N 13 YA6 C37 O39 DOUB N N 14 YA6 C08 C09 SING N N 15 YA6 C08 C07 DOUB Y N 16 YA6 C09 N10 SING N N 17 YA6 C40 C31 SING Y N 18 YA6 C31 C30 SING N N 19 YA6 C13 C12 DOUB Y N 20 YA6 C13 C15 SING Y N 21 YA6 C12 C11 SING Y N 22 YA6 C06 C07 SING Y N 23 YA6 C06 C05 SING N N 24 YA6 C15 C16 DOUB Y N 25 YA6 C11 N10 SING N N 26 YA6 C11 C17 DOUB Y N 27 YA6 N10 C25 SING N N 28 YA6 C30 C05 DOUB Y N 29 YA6 C30 N41 SING Y N 30 YA6 C05 N04 SING Y N 31 YA6 C16 C17 SING Y N 32 YA6 C17 N18 SING N N 33 YA6 O26 C25 DOUB N N 34 YA6 C25 C24 SING N N 35 YA6 N41 C03 DOUB Y N 36 YA6 N18 C19 SING N N 37 YA6 N04 C03 SING Y N 38 YA6 C03 S02 SING N N 39 YA6 C24 C19 DOUB Y N 40 YA6 C24 C23 SING Y N 41 YA6 C19 C20 SING Y N 42 YA6 C23 C22 DOUB Y N 43 YA6 C20 C21 DOUB Y N 44 YA6 S02 C01 SING N N 45 YA6 C22 C21 SING Y N 46 YA6 C01 H1 SING N N 47 YA6 C01 H2 SING N N 48 YA6 C01 H3 SING N N 49 YA6 C07 H4 SING N N 50 YA6 C09 H5 SING N N 51 YA6 C09 H6 SING N N 52 YA6 C12 H7 SING N N 53 YA6 C15 H8 SING N N 54 YA6 C16 H9 SING N N 55 YA6 C20 H10 SING N N 56 YA6 C21 H11 SING N N 57 YA6 C22 H12 SING N N 58 YA6 C23 H13 SING N N 59 YA6 C27 H14 SING N N 60 YA6 C28 H15 SING N N 61 YA6 C29 H16 SING N N 62 YA6 C32 H17 SING N N 63 YA6 C33 H18 SING N N 64 YA6 C38 H19 SING N N 65 YA6 C38 H20 SING N N 66 YA6 C38 H21 SING N N 67 YA6 C40 H22 SING N N 68 YA6 N04 H23 SING N N 69 YA6 N18 H24 SING N N 70 YA6 N36 H25 SING N N 71 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YA6 SMILES ACDLabs 12.01 "CC(=O)Nc1nccc(c1)c1nc(SC)[NH]c1c1cccc(c1)CN1c2cc(F)ccc2Nc2ccccc2C1=O" YA6 InChI InChI 1.06 "InChI=1S/C31H25FN6O2S/c1-18(39)34-27-15-21(12-13-33-27)29-28(36-31(37-29)41-2)20-7-5-6-19(14-20)17-38-26-16-22(32)10-11-25(26)35-24-9-4-3-8-23(24)30(38)40/h3-16,35H,17H2,1-2H3,(H,36,37)(H,33,34,39)" YA6 InChIKey InChI 1.06 WVHZDFHSSZOISX-UHFFFAOYSA-N YA6 SMILES_CANONICAL CACTVS 3.385 "CSc1[nH]c(c2cccc(CN3C(=O)c4ccccc4Nc5ccc(F)cc35)c2)c(n1)c6ccnc(NC(C)=O)c6" YA6 SMILES CACTVS 3.385 "CSc1[nH]c(c2cccc(CN3C(=O)c4ccccc4Nc5ccc(F)cc35)c2)c(n1)c6ccnc(NC(C)=O)c6" YA6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)Nc1cc(ccn1)c2c([nH]c(n2)SC)c3cccc(c3)CN4c5cc(ccc5Nc6ccccc6C4=O)F" YA6 SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)Nc1cc(ccn1)c2c([nH]c(n2)SC)c3cccc(c3)CN4c5cc(ccc5Nc6ccccc6C4=O)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YA6 "SYSTEMATIC NAME" ACDLabs 12.01 "N-{(4P)-4-[(4P)-5-{3-[(8-fluoro-11-oxo-5,11-dihydro-10H-dibenzo[b,e][1,4]diazepin-10-yl)methyl]phenyl}-2-(methylsulfanyl)-1H-imidazol-4-yl]pyridin-2-yl}acetamide" YA6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[4-[5-[3-[(3-fluoranyl-6-oxidanylidene-11~{H}-benzo[b][1,4]benzodiazepin-5-yl)methyl]phenyl]-2-methylsulfanyl-1~{H}-imidazol-4-yl]pyridin-2-yl]ethanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YA6 "Create component" 2023-01-19 RCSB YA6 "Initial release" 2024-01-17 RCSB #