data_YA8 # _chem_comp.id YA8 _chem_comp.name "[(3aR,3bR,6aS,6bS)-5-(1H-benzotriazole-5-carbonyl)octahydrocyclobuta[1,2-c:3,4-c']dipyrrol-2(1H)-yl](6-bromonaphthalen-2-yl)methanone" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H22 Br N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-12 _chem_comp.pdbx_modified_date 2024-12-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 516.389 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YA8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7G4T _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YA8 C02 C1 C 0 1 N N N N N N -13.965 10.479 49.172 -0.914 2.839 -0.375 C02 YA8 1 YA8 C04 C2 C 0 1 N N R N N N -11.525 10.531 49.389 -1.493 0.470 -0.323 C04 YA8 2 YA8 C05 C3 C 0 1 N N N N N N -11.858 9.479 48.340 0.006 0.643 -0.621 C05 YA8 3 YA8 C06 C4 C 0 1 N N S N N N -12.354 12.527 49.014 -2.954 1.667 0.652 C06 YA8 4 YA8 C07 C5 C 0 1 N N R N N N -11.021 11.792 48.682 -1.861 0.689 1.150 C07 YA8 5 YA8 N09 N1 N 0 1 N N N N N N -10.655 13.355 50.401 -3.957 -0.506 1.077 N09 YA8 6 YA8 C10 C6 C 0 1 N N N N N N -9.925 12.450 49.486 -2.663 -0.469 1.769 C10 YA8 7 YA8 C15 C7 C 0 1 N N N N N N -13.991 9.125 47.021 1.563 2.552 -0.186 C15 YA8 8 YA8 C17 C8 C 0 1 N N N N N N -10.224 13.806 51.641 -4.805 -1.553 1.065 C17 YA8 9 YA8 C18 C9 C 0 1 Y N N N N N -8.980 13.342 52.308 -6.126 -1.426 0.418 C18 YA8 10 YA8 C20 C10 C 0 1 Y N N N N N -8.964 11.987 52.801 -6.623 -2.475 -0.368 C20 YA8 11 YA8 C21 C11 C 0 1 Y N N N N N -7.873 11.444 53.475 -7.841 -2.371 -0.970 C21 YA8 12 YA8 C22 C12 C 0 1 Y N N N N N -7.861 14.172 52.523 -6.874 -0.269 0.595 C22 YA8 13 YA8 C23 C13 C 0 1 Y N N N N N -6.744 13.629 53.214 -8.124 -0.155 -0.020 C23 YA8 14 YA8 C24 C14 C 0 1 Y N N N N N -6.773 12.311 53.659 -8.604 -1.216 -0.810 C24 YA8 15 YA8 C28 C15 C 0 1 Y N N N N N -13.285 8.330 45.999 2.742 1.670 -0.314 C28 YA8 16 YA8 N01 N2 N 0 1 N N N N N N -13.315 9.667 48.098 0.325 2.055 -0.377 N01 YA8 17 YA8 C03 C16 C 0 1 N N S N N N -12.838 11.281 49.818 -2.088 1.872 -0.601 C03 YA8 18 YA8 C08 C17 C 0 1 N N N N N N -11.940 13.785 49.787 -4.182 0.776 0.401 C08 YA8 19 YA8 O16 O1 O 0 1 N N N N N N -15.232 9.317 46.921 1.710 3.727 0.091 O16 YA8 20 YA8 O19 O2 O 0 1 N N N N N N -11.029 14.568 52.208 -4.482 -2.603 1.586 O19 YA8 21 YA8 N25 N3 N 0 1 Y N N N N N -5.525 12.106 54.294 -9.833 -0.819 -1.275 N25 YA8 22 YA8 N26 N4 N 0 1 Y N N N N N -4.825 13.265 54.195 -10.061 0.466 -0.763 N26 YA8 23 YA8 N27 N5 N 0 1 Y N N N N N -5.545 14.195 53.563 -9.061 0.823 -0.035 N27 YA8 24 YA8 C29 C18 C 0 1 Y N N N N N -12.522 8.907 44.928 2.701 0.573 -1.193 C29 YA8 25 YA8 C30 C19 C 0 1 Y N N N N N -11.912 8.110 43.992 3.770 -0.251 -1.327 C30 YA8 26 YA8 C31 C20 C 0 1 Y N N N N N -13.407 6.963 46.071 3.881 1.934 0.429 C31 YA8 27 YA8 C32 C21 C 0 1 Y N N N N N -12.772 6.117 45.140 4.996 1.093 0.302 C32 YA8 28 YA8 C33 C22 C 0 1 Y N N N N N -12.032 6.689 44.076 4.940 -0.014 -0.583 C33 YA8 29 YA8 C34 C23 C 0 1 Y N N N N N -11.420 5.829 43.144 6.060 -0.853 -0.706 C34 YA8 30 YA8 C35 C24 C 0 1 Y N N N N N -11.566 4.460 43.279 7.179 -0.598 0.028 C35 YA8 31 YA8 C36 C25 C 0 1 Y N N N N N -12.318 3.869 44.343 7.232 0.487 0.903 C36 YA8 32 YA8 C37 C26 C 0 1 Y N N N N N -12.904 4.696 45.266 6.171 1.328 1.040 C37 YA8 33 YA8 BR38 BR1 BR 0 0 N N N N N N -10.743 3.262 42.038 8.682 -1.732 -0.142 BR38 YA8 34 YA8 H1 H1 H 0 1 N N N N N N -14.718 11.154 48.740 -1.030 3.342 0.585 H1 YA8 35 YA8 H2 H2 H 0 1 N N N N N N -14.443 9.822 49.914 -0.884 3.578 -1.177 H2 YA8 36 YA8 H3 H3 H 0 1 N N N N N N -10.903 10.182 50.227 -1.964 -0.384 -0.811 H3 YA8 37 YA8 H4 H4 H 0 1 N N N N N N -11.651 8.468 48.720 0.594 0.009 0.043 H4 YA8 38 YA8 H5 H5 H 0 1 N N N N N N -11.283 9.649 47.418 0.212 0.388 -1.660 H5 YA8 39 YA8 H6 H6 H 0 1 N N N N N N -12.968 12.736 48.126 -3.141 2.546 1.270 H6 YA8 40 YA8 H7 H7 H 0 1 N N N N N N -10.816 11.675 47.608 -1.078 1.112 1.780 H7 YA8 41 YA8 H8 H8 H 0 1 N N N N N N -9.350 11.702 50.051 -2.134 -1.410 1.620 H8 YA8 42 YA8 H9 H9 H 0 1 N N N N N N -9.246 13.017 48.833 -2.814 -0.291 2.834 H9 YA8 43 YA8 H10 H10 H 0 1 N N N N N N -9.834 11.368 52.641 -6.037 -3.373 -0.497 H10 YA8 44 YA8 H11 H11 H 0 1 N N N N N N -7.868 10.425 53.834 -8.216 -3.184 -1.574 H11 YA8 45 YA8 H12 H12 H 0 1 N N N N N N -7.853 15.193 52.172 -6.493 0.538 1.204 H12 YA8 46 YA8 H13 H13 H 0 1 N N N N N N -12.938 11.443 50.901 -2.614 2.000 -1.547 H13 YA8 47 YA8 H14 H14 H 0 1 N N N N N N -11.795 14.641 49.111 -5.074 1.255 0.806 H14 YA8 48 YA8 H15 H15 H 0 1 N N N N N N -12.683 14.046 50.555 -4.306 0.612 -0.669 H15 YA8 49 YA8 H16 H16 H 0 1 N N N N N N -5.216 11.263 54.734 -10.428 -1.329 -1.847 H16 YA8 50 YA8 H17 H17 H 0 1 N N N N N N -12.427 9.981 44.858 1.806 0.384 -1.768 H17 YA8 51 YA8 H18 H18 H 0 1 N N N N N N -11.341 8.557 43.192 3.723 -1.090 -2.006 H18 YA8 52 YA8 H19 H19 H 0 1 N N N N N N -14.003 6.527 46.859 3.911 2.780 1.099 H19 YA8 53 YA8 H20 H20 H 0 1 N N N N N N -10.840 6.236 42.329 6.033 -1.698 -1.378 H20 YA8 54 YA8 H21 H21 H 0 1 N N N N N N -12.422 2.797 44.417 8.131 0.667 1.474 H21 YA8 55 YA8 H22 H22 H 0 1 N N N N N N -13.465 4.276 46.088 6.228 2.167 1.718 H22 YA8 56 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YA8 N01 C02 SING N N 1 YA8 N01 C05 SING N N 2 YA8 N01 C15 SING N N 3 YA8 C02 C03 SING N N 4 YA8 C03 C04 SING N N 5 YA8 C03 C06 SING N N 6 YA8 C04 C05 SING N N 7 YA8 C04 C07 SING N N 8 YA8 C06 C07 SING N N 9 YA8 C06 C08 SING N N 10 YA8 C07 C10 SING N N 11 YA8 C08 N09 SING N N 12 YA8 N09 C10 SING N N 13 YA8 N09 C17 SING N N 14 YA8 C15 O16 DOUB N N 15 YA8 C15 C28 SING N N 16 YA8 C17 C18 SING N N 17 YA8 C17 O19 DOUB N N 18 YA8 C18 C20 DOUB Y N 19 YA8 C18 C22 SING Y N 20 YA8 C20 C21 SING Y N 21 YA8 C21 C24 DOUB Y N 22 YA8 C22 C23 DOUB Y N 23 YA8 C23 C24 SING Y N 24 YA8 C23 N27 SING Y N 25 YA8 C24 N25 SING Y N 26 YA8 N25 N26 SING Y N 27 YA8 N26 N27 DOUB Y N 28 YA8 C28 C29 DOUB Y N 29 YA8 C28 C31 SING Y N 30 YA8 C29 C30 SING Y N 31 YA8 C30 C33 DOUB Y N 32 YA8 C31 C32 DOUB Y N 33 YA8 C32 C33 SING Y N 34 YA8 C32 C37 SING Y N 35 YA8 C33 C34 SING Y N 36 YA8 C34 C35 DOUB Y N 37 YA8 C35 C36 SING Y N 38 YA8 C35 BR38 SING N N 39 YA8 C36 C37 DOUB Y N 40 YA8 C02 H1 SING N N 41 YA8 C02 H2 SING N N 42 YA8 C04 H3 SING N N 43 YA8 C05 H4 SING N N 44 YA8 C05 H5 SING N N 45 YA8 C06 H6 SING N N 46 YA8 C07 H7 SING N N 47 YA8 C10 H8 SING N N 48 YA8 C10 H9 SING N N 49 YA8 C20 H10 SING N N 50 YA8 C21 H11 SING N N 51 YA8 C22 H12 SING N N 52 YA8 C03 H13 SING N N 53 YA8 C08 H14 SING N N 54 YA8 C08 H15 SING N N 55 YA8 N25 H16 SING N N 56 YA8 C29 H17 SING N N 57 YA8 C30 H18 SING N N 58 YA8 C31 H19 SING N N 59 YA8 C34 H20 SING N N 60 YA8 C36 H21 SING N N 61 YA8 C37 H22 SING N N 62 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YA8 SMILES ACDLabs 12.01 "Brc1ccc2cc(ccc2c1)C(=O)N1CC2C(C1)C1CN(CC21)C(=O)c1cc2nn[NH]c2cc1" YA8 InChI InChI 1.06 "InChI=1S/C26H22BrN5O2/c27-18-5-3-14-7-16(2-1-15(14)8-18)25(33)31-10-19-20(11-31)22-13-32(12-21(19)22)26(34)17-4-6-23-24(9-17)29-30-28-23/h1-9,19-22H,10-13H2,(H,28,29,30)/t19-,20+,21+,22-" YA8 InChIKey InChI 1.06 VLNJAZOILNVBBF-ZDNVTZCJSA-N YA8 SMILES_CANONICAL CACTVS 3.385 "Brc1ccc2cc(ccc2c1)C(=O)N3C[C@H]4[C@@H](C3)[C@@H]5CN(C[C@H]45)C(=O)c6ccc7[nH]nnc7c6" YA8 SMILES CACTVS 3.385 "Brc1ccc2cc(ccc2c1)C(=O)N3C[CH]4[CH](C3)[CH]5CN(C[CH]45)C(=O)c6ccc7[nH]nnc7c6" YA8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(cc2c1cc(cc2)Br)C(=O)N3C[C@@H]4[C@H](C3)[C@@H]5[C@H]4CN(C5)C(=O)c6ccc7c(c6)nn[nH]7" YA8 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(cc2c1cc(cc2)Br)C(=O)N3CC4C(C3)C5C4CN(C5)C(=O)c6ccc7c(c6)nn[nH]7" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YA8 "SYSTEMATIC NAME" ACDLabs 12.01 "[(3aR,3bR,6aS,6bS)-5-(1H-benzotriazole-5-carbonyl)octahydrocyclobuta[1,2-c:3,4-c']dipyrrol-2(1H)-yl](6-bromonaphthalen-2-yl)methanone" YA8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(1~{S},2~{S},6~{R},7~{R})-9-(1~{H}-benzotriazol-5-ylcarbonyl)-4,9-diazatricyclo[5.3.0.0^{2,6}]decan-4-yl]-(6-bromanylnaphthalen-2-yl)methanone" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YA8 "Create component" 2023-06-12 RCSB YA8 "Initial release" 2024-12-18 RCSB #