data_YAA # _chem_comp.id YAA _chem_comp.name "N-{(3P)-3-[(4P)-4-(2-acetamidopyridin-4-yl)-2-(methylsulfanyl)-1H-imidazol-5-yl]phenyl}-11-oxo-10,11-dihydro-5H-dibenzo[b,e][1,4]diazepine-9-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C31 H25 N7 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-01-19 _chem_comp.pdbx_modified_date 2024-01-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 575.640 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YAA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8FV4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YAA C10 C1 C 0 1 Y N N N N N 25.723 13.613 12.677 -1.639 -0.620 -1.609 C10 YAA 1 YAA C11 C2 C 0 1 Y N N N N N 24.600 14.245 12.200 -0.275 -0.890 -1.483 C11 YAA 2 YAA C02 C3 C 0 1 N N N N N N 29.658 7.112 13.759 -8.392 -1.052 1.865 C02 YAA 3 YAA C03 C4 C 0 1 N N N N N N 30.531 5.940 14.198 -9.889 -0.886 1.894 C03 YAA 4 YAA C05 C5 C 0 1 Y N N N N N 27.604 8.561 14.280 -6.268 -0.475 0.972 C05 YAA 5 YAA C06 C6 C 0 1 Y N N N N N 27.705 9.363 13.148 -5.484 0.417 0.254 C06 YAA 6 YAA C07 C7 C 0 1 Y N N N N N 26.812 10.412 13.043 -4.111 0.180 0.152 C07 YAA 7 YAA C08 C8 C 0 1 Y N N N N N 26.784 11.313 11.831 -3.235 1.103 -0.603 C08 YAA 8 YAA C09 C9 C 0 1 Y N N N N N 26.318 12.598 11.698 -2.148 0.745 -1.377 C09 YAA 9 YAA C12 C10 C 0 1 Y N N N N N 23.959 15.232 12.927 0.196 -2.174 -1.709 C12 YAA 10 YAA C14 C11 C 0 1 N N N N N N 21.861 16.763 12.747 2.297 -1.807 -0.655 C14 YAA 11 YAA C15 C12 C 0 1 Y N N N N N 20.623 17.012 11.886 3.756 -2.013 -0.598 C15 YAA 12 YAA C16 C13 C 0 1 Y N N N N N 20.622 17.852 10.750 4.522 -1.347 0.374 C16 YAA 13 YAA C18 C14 C 0 1 N N N N N N 22.055 19.839 9.716 4.291 0.614 1.783 C18 YAA 14 YAA C19 C15 C 0 1 Y N N N N N 20.920 20.803 9.271 5.544 1.290 1.428 C19 YAA 15 YAA C20 C16 C 0 1 Y N N N N N 21.163 22.205 9.269 5.568 2.680 1.276 C20 YAA 16 YAA C21 C17 C 0 1 Y N N N N N 20.166 23.079 8.834 6.751 3.321 0.980 C21 YAA 17 YAA C22 C18 C 0 1 Y N N N N N 18.933 22.574 8.405 7.923 2.597 0.835 C22 YAA 18 YAA C23 C19 C 0 1 Y N N N N N 18.685 21.204 8.402 7.914 1.223 0.967 C23 YAA 19 YAA C24 C20 C 0 1 Y N N N N N 19.711 20.322 8.839 6.726 0.559 1.245 C24 YAA 20 YAA C27 C21 C 0 1 Y N N N N N 19.474 18.010 10.001 5.900 -1.538 0.398 C27 YAA 21 YAA C28 C22 C 0 1 Y N N N N N 18.276 17.340 10.361 6.499 -2.406 -0.501 C28 YAA 22 YAA C29 C23 C 0 1 Y N N N N N 18.286 16.515 11.475 5.739 -3.071 -1.449 C29 YAA 23 YAA C30 C24 C 0 1 Y N N N N N 19.450 16.345 12.230 4.377 -2.874 -1.506 C30 YAA 24 YAA C32 C25 C 0 1 Y N N N N N 24.407 15.577 14.212 -0.689 -3.188 -2.059 C32 YAA 25 YAA C33 C26 C 0 1 Y N N N N N 25.557 14.947 14.705 -2.040 -2.921 -2.184 C33 YAA 26 YAA C34 C27 C 0 1 Y N N N N N 26.227 13.980 13.930 -2.520 -1.647 -1.962 C34 YAA 27 YAA C36 C28 C 0 1 Y N N N N N 26.963 11.881 9.774 -2.407 2.938 -1.422 C36 YAA 28 YAA C38 C29 C 0 1 N N N N N N 25.804 12.324 7.132 -3.542 5.358 -0.836 C38 YAA 29 YAA C40 C30 C 0 1 Y N N N N N 25.847 10.579 14.026 -3.586 -0.955 0.785 C40 YAA 30 YAA C41 C31 C 0 1 Y N N N N N 25.824 9.743 15.117 -4.434 -1.790 1.478 C41 YAA 31 YAA N04 N1 N 0 1 N N N N N N 28.495 7.451 14.548 -7.640 -0.253 1.082 N04 YAA 32 YAA N13 N2 N 0 1 N N N N N N 22.756 15.734 12.281 1.561 -2.450 -1.584 N13 YAA 33 YAA N17 N3 N 0 1 N N N N N N 21.858 18.542 10.366 3.879 -0.549 1.306 N17 YAA 34 YAA N25 N4 N 0 1 N N N N N N 19.453 18.882 8.834 6.703 -0.829 1.303 N25 YAA 35 YAA N35 N5 N 0 1 Y N N N N N 26.438 12.916 10.424 -1.633 1.919 -1.890 N35 YAA 36 YAA N39 N6 N 0 1 Y N N N N N 27.155 10.887 10.650 -3.357 2.444 -0.664 N39 YAA 37 YAA N42 N7 N 0 1 Y N N N N N 26.693 8.768 15.216 -5.728 -1.538 1.549 N42 YAA 38 YAA O01 O1 O 0 1 N N N N N N 29.931 7.735 12.808 -7.863 -1.906 2.545 O01 YAA 39 YAA O26 O2 O 0 1 N N N N N N 23.165 20.175 9.508 3.569 1.172 2.586 O26 YAA 40 YAA O31 O3 O 0 1 N N N N N N 22.071 17.347 13.765 1.757 -1.057 0.136 O31 YAA 41 YAA S37 S1 S 0 1 N N N N N N 27.334 11.869 8.002 -2.173 4.647 -1.782 S37 YAA 42 YAA H1 H1 H 0 1 N N N N N N 24.208 13.964 11.234 0.411 -0.101 -1.211 H1 YAA 43 YAA H2 H2 H 0 1 N N N N N N 31.374 5.828 13.500 -10.340 -1.518 1.129 H2 YAA 44 YAA H3 H3 H 0 1 N N N N N N 30.916 6.129 15.211 -10.268 -1.177 2.874 H3 YAA 45 YAA H4 H4 H 0 1 N N N N N N 29.932 5.017 14.200 -10.143 0.156 1.701 H4 YAA 46 YAA H5 H5 H 0 1 N N N N N N 28.447 9.174 12.386 -5.929 1.280 -0.220 H5 YAA 47 YAA H6 H6 H 0 1 N N N N N N 22.115 22.591 9.603 4.658 3.251 1.390 H6 YAA 48 YAA H7 H7 H 0 1 N N N N N N 20.345 24.144 8.828 6.765 4.394 0.860 H7 YAA 49 YAA H8 H8 H 0 1 N N N N N N 18.164 23.256 8.072 8.849 3.110 0.618 H8 YAA 50 YAA H9 H9 H 0 1 N N N N N N 17.731 20.818 8.074 8.831 0.664 0.855 H9 YAA 51 YAA H10 H10 H 0 1 N N N N N N 17.375 17.470 9.779 7.567 -2.565 -0.463 H10 YAA 52 YAA H11 H11 H 0 1 N N N N N N 17.383 15.997 11.763 6.215 -3.745 -2.146 H11 YAA 53 YAA H12 H12 H 0 1 N N N N N N 19.440 15.690 13.089 3.788 -3.389 -2.251 H12 YAA 54 YAA H13 H13 H 0 1 N N N N N N 23.879 16.309 14.805 -0.319 -4.187 -2.235 H13 YAA 55 YAA H14 H14 H 0 1 N N N N N N 25.932 15.204 15.685 -2.722 -3.713 -2.457 H14 YAA 56 YAA H15 H15 H 0 1 N N N N N N 27.131 13.521 14.303 -3.575 -1.442 -2.060 H15 YAA 57 YAA H16 H16 H 0 1 N N N N N N 25.986 12.329 6.047 -4.486 4.953 -1.202 H16 YAA 58 YAA H17 H17 H 0 1 N N N N N N 25.017 11.593 7.368 -3.424 5.107 0.218 H17 YAA 59 YAA H18 H18 H 0 1 N N N N N N 25.483 13.326 7.454 -3.541 6.441 -0.954 H18 YAA 60 YAA H19 H19 H 0 1 N N N N N N 25.113 11.366 13.934 -2.530 -1.172 0.729 H19 YAA 61 YAA H20 H20 H 0 1 N N N N N N 25.088 9.890 15.894 -4.035 -2.666 1.968 H20 YAA 62 YAA H21 H21 H 0 1 N N N N N N 28.290 6.875 15.339 -8.054 0.477 0.595 H21 YAA 63 YAA H22 H22 H 0 1 N N N N N N 22.521 15.313 11.405 1.979 -3.104 -2.165 H22 YAA 64 YAA H23 H23 H 0 1 N N N N N N 22.700 18.048 10.583 3.033 -0.879 1.646 H23 YAA 65 YAA H24 H24 H 0 1 N N N N N N 19.244 18.459 7.952 7.235 -1.302 1.962 H24 YAA 66 YAA H25 H25 H 0 1 N N N N N N 26.178 13.790 10.014 -0.861 2.004 -2.472 H25 YAA 67 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YAA C38 S37 SING N N 1 YAA S37 C36 SING N N 2 YAA C23 C22 DOUB Y N 3 YAA C23 C24 SING Y N 4 YAA C22 C21 SING Y N 5 YAA N25 C24 SING N N 6 YAA N25 C27 SING N N 7 YAA C21 C20 DOUB Y N 8 YAA C24 C19 DOUB Y N 9 YAA C20 C19 SING Y N 10 YAA C19 C18 SING N N 11 YAA O26 C18 DOUB N N 12 YAA C18 N17 SING N N 13 YAA C36 N35 SING Y N 14 YAA C36 N39 DOUB Y N 15 YAA C27 C28 DOUB Y N 16 YAA C27 C16 SING Y N 17 YAA C28 C29 SING Y N 18 YAA N17 C16 SING N N 19 YAA N35 C09 SING Y N 20 YAA N39 C08 SING Y N 21 YAA C16 C15 DOUB Y N 22 YAA C29 C30 DOUB Y N 23 YAA C09 C08 DOUB Y N 24 YAA C09 C10 SING N N 25 YAA C08 C07 SING N N 26 YAA C15 C30 SING Y N 27 YAA C15 C14 SING N N 28 YAA C11 C10 DOUB Y N 29 YAA C11 C12 SING Y N 30 YAA N13 C14 SING N N 31 YAA N13 C12 SING N N 32 YAA C10 C34 SING Y N 33 YAA C14 O31 DOUB N N 34 YAA O01 C02 DOUB N N 35 YAA C12 C32 DOUB Y N 36 YAA C07 C06 DOUB Y N 37 YAA C07 C40 SING Y N 38 YAA C06 C05 SING Y N 39 YAA C02 C03 SING N N 40 YAA C02 N04 SING N N 41 YAA C34 C33 DOUB Y N 42 YAA C40 C41 DOUB Y N 43 YAA C32 C33 SING Y N 44 YAA C05 N04 SING N N 45 YAA C05 N42 DOUB Y N 46 YAA C41 N42 SING Y N 47 YAA C11 H1 SING N N 48 YAA C03 H2 SING N N 49 YAA C03 H3 SING N N 50 YAA C03 H4 SING N N 51 YAA C06 H5 SING N N 52 YAA C20 H6 SING N N 53 YAA C21 H7 SING N N 54 YAA C22 H8 SING N N 55 YAA C23 H9 SING N N 56 YAA C28 H10 SING N N 57 YAA C29 H11 SING N N 58 YAA C30 H12 SING N N 59 YAA C32 H13 SING N N 60 YAA C33 H14 SING N N 61 YAA C34 H15 SING N N 62 YAA C38 H16 SING N N 63 YAA C38 H17 SING N N 64 YAA C38 H18 SING N N 65 YAA C40 H19 SING N N 66 YAA C41 H20 SING N N 67 YAA N04 H21 SING N N 68 YAA N13 H22 SING N N 69 YAA N17 H23 SING N N 70 YAA N25 H24 SING N N 71 YAA N35 H25 SING N N 72 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YAA SMILES ACDLabs 12.01 "CC(=O)Nc1nccc(c1)c1nc(SC)[NH]c1c1cc(ccc1)NC(=O)c1cccc2Nc3ccccc3C(=O)Nc12" YAA InChI InChI 1.06 "InChI=1S/C31H25N7O3S/c1-17(39)33-25-16-19(13-14-32-25)27-26(37-31(38-27)42-2)18-7-5-8-20(15-18)34-30(41)22-10-6-12-24-28(22)36-29(40)21-9-3-4-11-23(21)35-24/h3-16,35H,1-2H3,(H,34,41)(H,36,40)(H,37,38)(H,32,33,39)" YAA InChIKey InChI 1.06 LYRJTYBPIGJFCT-UHFFFAOYSA-N YAA SMILES_CANONICAL CACTVS 3.385 "CSc1[nH]c(c2cccc(NC(=O)c3cccc4Nc5ccccc5C(=O)Nc34)c2)c(n1)c6ccnc(NC(C)=O)c6" YAA SMILES CACTVS 3.385 "CSc1[nH]c(c2cccc(NC(=O)c3cccc4Nc5ccccc5C(=O)Nc34)c2)c(n1)c6ccnc(NC(C)=O)c6" YAA SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)Nc1cc(ccn1)c2c([nH]c(n2)SC)c3cccc(c3)NC(=O)c4cccc5c4NC(=O)c6ccccc6N5" YAA SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)Nc1cc(ccn1)c2c([nH]c(n2)SC)c3cccc(c3)NC(=O)c4cccc5c4NC(=O)c6ccccc6N5" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YAA "SYSTEMATIC NAME" ACDLabs 12.01 "N-{(3P)-3-[(4P)-4-(2-acetamidopyridin-4-yl)-2-(methylsulfanyl)-1H-imidazol-5-yl]phenyl}-11-oxo-10,11-dihydro-5H-dibenzo[b,e][1,4]diazepine-9-carboxamide" YAA "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[3-[4-(2-acetamidopyridin-4-yl)-2-methylsulfanyl-1~{H}-imidazol-5-yl]phenyl]-6-oxidanylidene-5,11-dihydrobenzo[b][1,4]benzodiazepine-4-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YAA "Create component" 2023-01-19 RCSB YAA "Initial release" 2024-01-17 RCSB #