data_YAE # _chem_comp.id YAE _chem_comp.name "(E)-S-ethyl-N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)-L-homocysteine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H21 N2 O7 P S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-11-29 _chem_comp.pdbx_modified_date 2023-12-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 392.365 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YAE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8V4A _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YAE C02 C1 C 0 1 N N N N N N 31.317 53.654 16.148 2.962 -1.353 -2.725 C02 YAE 1 YAE C04 C2 C 0 1 N N N N N N 28.793 53.127 15.682 3.700 0.221 -0.956 C04 YAE 2 YAE C05 C3 C 0 1 N N N N N N 28.875 52.952 14.171 3.234 1.322 -0.001 C05 YAE 3 YAE C07 C4 C 0 1 N N N N N N 30.377 54.829 12.753 3.924 3.273 1.942 C07 YAE 4 YAE C09 C5 C 0 1 Y N N N N N 29.004 54.452 21.869 -0.928 -2.972 2.034 C09 YAE 5 YAE C10 C6 C 0 1 N N N N N N 29.981 55.244 22.689 -0.458 -4.131 2.873 C10 YAE 6 YAE C11 C7 C 0 1 Y N N N N N 29.344 54.031 20.570 -0.052 -2.372 1.141 C11 YAE 7 YAE C12 C8 C 0 1 Y N N N N N 28.331 53.295 19.894 -0.507 -1.293 0.366 C12 YAE 8 YAE C13 C9 C 0 1 N N N N N N 28.622 52.837 18.522 0.385 -0.621 -0.598 C13 YAE 9 YAE C14 C10 C 0 1 Y N N N N N 27.088 52.989 20.449 -1.832 -0.873 0.534 C14 YAE 10 YAE C15 C11 C 0 1 N N N N N N 26.050 52.207 19.688 -2.377 0.279 -0.269 C15 YAE 11 YAE C16 C12 C 0 1 Y N N N N N 26.855 53.461 21.737 -2.632 -1.530 1.447 C16 YAE 12 YAE C23 C13 C 0 1 N N S N N N 30.057 52.844 16.518 2.492 -0.356 -1.697 C23 YAE 13 YAE C25 C14 C 0 1 N N N N N N 30.477 53.824 11.625 5.021 3.956 2.763 C25 YAE 14 YAE N01 N1 N 0 1 N N N N N N 29.670 53.238 17.895 1.606 -1.023 -0.739 N01 YAE 15 YAE N17 N2 N 0 1 Y N N N N N 27.794 54.151 22.392 -2.169 -2.544 2.153 N17 YAE 16 YAE O03 O1 O 0 1 N N N N N N 31.861 53.341 15.058 2.595 -2.502 -2.664 O03 YAE 17 YAE O08 O2 O 0 1 N N N N N N 31.655 54.520 17.012 3.784 -0.962 -3.711 O08 YAE 18 YAE O18 O3 O 0 1 N N N N N N 26.532 50.607 17.126 -3.962 2.968 -0.417 O18 YAE 19 YAE O19 O4 O 0 1 N N N N N N 24.334 50.336 18.430 -6.076 1.713 0.152 O19 YAE 20 YAE O20 O5 O 0 1 N N N N N N 30.479 54.293 20.030 1.223 -2.820 1.019 O20 YAE 21 YAE O21 O6 O 0 1 N N N N N N 26.215 48.587 18.638 -4.846 1.353 -2.143 O21 YAE 22 YAE O22 O7 O 0 1 N N N N N N 26.432 50.857 19.609 -3.742 0.505 0.087 O22 YAE 23 YAE P24 P1 P 0 1 N N N N N N 25.821 50.016 18.324 -4.642 1.663 -0.577 P24 YAE 24 YAE S06 S1 S 0 1 N N N N N N 28.751 54.657 13.552 4.666 2.007 0.876 S06 YAE 25 YAE H041 H1 H 0 0 N N N N N N 28.502 54.170 15.874 4.402 0.640 -1.678 H041 YAE 26 YAE H042 H2 H 0 0 N N N N N N 28.004 52.453 16.046 4.190 -0.569 -0.389 H042 YAE 27 YAE H051 H3 H 0 0 N N N N N N 29.831 52.494 13.878 2.744 2.112 -0.569 H051 YAE 28 YAE H052 H4 H 0 0 N N N N N N 28.044 52.335 13.799 2.532 0.904 0.720 H052 YAE 29 YAE H071 H5 H 0 0 N N N N N N 30.485 55.847 12.351 3.205 2.806 2.615 H071 YAE 30 YAE H072 H6 H 0 0 N N N N N N 31.172 54.639 13.489 3.417 4.015 1.326 H072 YAE 31 YAE H102 H7 H 0 0 N N N N N N 29.534 55.479 23.666 -0.044 -3.758 3.810 H102 YAE 32 YAE H101 H8 H 0 0 N N N N N N 30.898 54.654 22.837 -1.299 -4.791 3.086 H101 YAE 33 YAE H103 H9 H 0 0 N N N N N N 30.227 56.179 22.164 0.310 -4.684 2.332 H103 YAE 34 YAE H131 H10 H 0 0 N N N N N N 27.942 52.153 18.036 0.019 0.208 -1.186 H131 YAE 35 YAE H152 H11 H 0 0 N N N N N N 25.083 52.283 20.207 -1.793 1.176 -0.061 H152 YAE 36 YAE H151 H12 H 0 0 N N N N N N 25.955 52.619 18.673 -2.314 0.043 -1.332 H151 YAE 37 YAE H161 H13 H 0 0 N N N N N N 25.905 53.268 22.213 -3.655 -1.212 1.582 H161 YAE 38 YAE H231 H14 H 0 0 N N N N N N 30.288 51.769 16.480 1.950 0.449 -2.192 H231 YAE 39 YAE H251 H15 H 0 0 N N N N N N 31.457 53.919 11.134 4.575 4.717 3.403 H251 YAE 40 YAE H253 H16 H 0 0 N N N N N N 30.367 52.807 12.029 5.529 3.214 3.379 H253 YAE 41 YAE H252 H17 H 0 0 N N N N N N 29.680 54.016 10.892 5.740 4.423 2.090 H252 YAE 42 YAE H1 H18 H 0 1 N N N N N N 32.447 54.960 16.727 4.055 -1.636 -4.349 H1 YAE 43 YAE H2 H19 H 0 1 N N N N N N 24.074 50.880 17.696 -6.672 2.389 -0.198 H2 YAE 44 YAE H3 H20 H 0 1 N N N N N N 30.508 53.922 19.156 1.335 -3.512 0.353 H3 YAE 45 YAE H4 H21 H 0 1 N N N N N N 26.864 48.292 18.010 -5.286 0.511 -2.323 H4 YAE 46 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YAE N01 C13 DOUB N N 1 YAE N01 C23 SING N N 2 YAE C02 O03 DOUB N N 3 YAE C02 O08 SING N N 4 YAE C02 C23 SING N N 5 YAE C04 C05 SING N N 6 YAE C04 C23 SING N N 7 YAE C05 S06 SING N N 8 YAE S06 C07 SING N N 9 YAE C07 C25 SING N N 10 YAE C09 C10 SING N N 11 YAE C11 C09 DOUB Y N 12 YAE N17 C09 SING Y N 13 YAE C12 C11 SING Y N 14 YAE C11 O20 SING N N 15 YAE C12 C13 SING N N 16 YAE C14 C12 DOUB Y N 17 YAE C14 C15 SING N N 18 YAE C14 C16 SING Y N 19 YAE C15 O22 SING N N 20 YAE N17 C16 DOUB Y N 21 YAE O18 P24 DOUB N N 22 YAE O19 P24 SING N N 23 YAE O21 P24 SING N N 24 YAE O22 P24 SING N N 25 YAE C04 H041 SING N N 26 YAE C04 H042 SING N N 27 YAE C05 H051 SING N N 28 YAE C05 H052 SING N N 29 YAE C07 H071 SING N N 30 YAE C07 H072 SING N N 31 YAE C10 H102 SING N N 32 YAE C10 H101 SING N N 33 YAE C10 H103 SING N N 34 YAE C13 H131 SING N N 35 YAE C15 H152 SING N N 36 YAE C15 H151 SING N N 37 YAE C16 H161 SING N N 38 YAE C23 H231 SING N N 39 YAE C25 H251 SING N N 40 YAE C25 H253 SING N N 41 YAE C25 H252 SING N N 42 YAE O08 H1 SING N N 43 YAE O19 H2 SING N N 44 YAE O20 H3 SING N N 45 YAE O21 H4 SING N N 46 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YAE SMILES ACDLabs 12.01 "Oc1c(/C=N/C(CCSCC)C(=O)O)c(cnc1C)COP(=O)(O)O" YAE InChI InChI 1.06 "InChI=1S/C14H21N2O7PS/c1-3-25-5-4-12(14(18)19)16-7-11-10(8-23-24(20,21)22)6-15-9(2)13(11)17/h6-7,12,17H,3-5,8H2,1-2H3,(H,18,19)(H2,20,21,22)" YAE InChIKey InChI 1.06 OMGMVELSRDRWBU-UHFFFAOYSA-N YAE SMILES_CANONICAL CACTVS 3.385 "CCSCC[C@H](N=Cc1c(O)c(C)ncc1CO[P](O)(O)=O)C(O)=O" YAE SMILES CACTVS 3.385 "CCSCC[CH](N=Cc1c(O)c(C)ncc1CO[P](O)(O)=O)C(O)=O" YAE SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCSCC[C@@H](C(=O)O)/N=C/c1c(cnc(c1O)C)COP(=O)(O)O" YAE SMILES "OpenEye OEToolkits" 2.0.7 "CCSCCC(C(=O)O)N=Cc1c(cnc(c1O)C)COP(=O)(O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YAE "SYSTEMATIC NAME" ACDLabs 12.01 "(E)-S-ethyl-N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)-L-homocysteine" YAE "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-4-ethylsulfanyl-2-[(~{E})-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YAE "Create component" 2023-11-29 RCSB YAE "Initial release" 2023-12-13 RCSB #