data_YB1 # _chem_comp.id YB1 _chem_comp.name "1-[(3aR,6aS)-5-{2-cyclopropyl-6-[(oxan-4-yl)methoxy]pyridine-4-carbonyl}hexahydropyrrolo[3,4-c]pyrrol-2(1H)-yl]-3-(1H-1,2,3-triazol-5-yl)propan-1-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H34 N6 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-12 _chem_comp.pdbx_modified_date 2024-12-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 494.586 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YB1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7G79 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YB1 C10 C1 C 0 1 N N N N N N -11.414 10.209 43.104 5.688 3.490 0.887 C10 YB1 1 YB1 C11 C2 C 0 1 N N N N N N -10.190 9.784 42.287 6.538 4.110 -0.225 C11 YB1 2 YB1 C15 C3 C 0 1 N N N N N N -11.323 3.850 42.959 5.452 -2.834 0.322 C15 YB1 3 YB1 C16 C4 C 0 1 N N N N N N -10.385 3.352 44.055 6.821 -3.296 0.831 C16 YB1 4 YB1 C17 C5 C 0 1 N N N N N N -10.122 1.805 43.870 6.935 -4.813 0.663 C17 YB1 5 YB1 C19 C6 C 0 1 N N N N N N -10.550 1.969 41.527 5.461 -4.790 -1.229 C19 YB1 6 YB1 C20 C7 C 0 1 N N N N N N -10.649 3.534 41.617 5.288 -3.272 -1.137 C20 YB1 7 YB1 C21 C8 C 0 1 N N N N N N -14.497 10.334 49.298 -1.550 2.490 -0.726 C21 YB1 8 YB1 C22 C9 C 0 1 N N S N N N -13.409 10.991 50.148 -2.357 1.227 -0.642 C22 YB1 9 YB1 C23 C10 C 0 1 N N S N N N -12.349 11.443 49.116 -1.558 0.474 0.498 C23 YB1 10 YB1 C24 C11 C 0 1 N N N N N N -12.257 10.236 48.184 -0.170 0.618 -0.072 C24 YB1 11 YB1 C25 C12 C 0 1 N N N N N N -11.236 11.877 50.066 -2.365 -0.789 0.583 C25 YB1 12 YB1 C27 C13 C 0 1 N N N N N N -13.516 12.314 50.960 -3.744 1.084 -0.071 C27 YB1 13 YB1 C28 C14 C 0 1 N N N N N N -11.438 13.302 52.128 -4.872 -1.130 0.449 C28 YB1 14 YB1 N1 N1 N 0 1 N N N N N N -13.661 9.810 48.124 -0.142 2.060 -0.476 N1 YB1 15 YB1 C2 C15 C 0 1 N N N N N N -14.163 9.019 47.159 0.957 2.831 -0.593 C2 YB1 16 YB1 O3 O1 O 0 1 N N N N N N -15.347 8.689 47.179 0.857 3.974 -0.993 O3 YB1 17 YB1 C4 C16 C 0 1 Y N N N N N -13.267 8.568 46.027 2.287 2.285 -0.234 C4 YB1 18 YB1 C5 C17 C 0 1 Y N N N N N -13.072 7.225 45.703 2.530 0.911 -0.268 C5 YB1 19 YB1 C6 C18 C 0 1 Y N N N N N -12.353 6.987 44.524 3.792 0.443 0.076 C6 YB1 20 YB1 N7 N2 N 0 1 Y N N N N N -11.861 7.918 43.698 4.750 1.281 0.431 N7 YB1 21 YB1 C8 C19 C 0 1 Y N N N N N -12.032 9.230 44.046 4.556 2.585 0.474 C8 YB1 22 YB1 C9 C20 C 0 1 Y N N N N N -12.726 9.616 45.196 3.334 3.133 0.142 C9 YB1 23 YB1 C12 C21 C 0 1 N N N N N N -11.542 9.932 41.592 5.556 4.980 0.562 C12 YB1 24 YB1 O13 O2 O 0 1 N N N N N N -12.111 5.705 44.238 4.043 -0.890 0.048 O13 YB1 25 YB1 C14 C22 C 0 1 N N N N N N -11.411 5.395 43.029 5.359 -1.310 0.412 C14 YB1 26 YB1 O18 O3 O 0 1 N N N N N N -9.651 1.511 42.552 6.742 -5.155 -0.711 O18 YB1 27 YB1 N26 N3 N 0 1 N N N N N N -12.044 12.564 51.108 -3.772 -0.359 0.333 N26 YB1 28 YB1 O29 O4 O 0 1 N N N N N N -12.177 13.906 52.941 -4.765 -2.290 0.786 O29 YB1 29 YB1 C30 C23 C 0 1 N N N N N N -9.900 13.333 52.181 -6.233 -0.550 0.161 C30 YB1 30 YB1 C31 C24 C 0 1 N N N N N N -9.425 13.203 53.652 -7.299 -1.627 0.367 C31 YB1 31 YB1 C32 C25 C 0 1 Y N N N N N -7.943 12.855 53.759 -8.660 -1.048 0.079 C32 YB1 32 YB1 C33 C26 C 0 1 Y N N N N N -7.282 11.618 53.816 -9.260 -0.943 -1.130 C33 YB1 33 YB1 N34 N4 N 0 1 Y N N N N N -5.880 11.872 54.046 -10.451 -0.373 -0.915 N34 YB1 34 YB1 N35 N5 N 0 1 Y N N N N N -5.668 13.109 54.101 -10.580 -0.139 0.343 N35 YB1 35 YB1 N36 N6 N 0 1 Y N N N N N -6.881 13.787 53.930 -9.531 -0.533 0.978 N36 YB1 36 YB1 H41 H1 H 0 1 N N N N N N -11.450 11.268 43.400 6.192 3.220 1.815 H41 YB1 37 YB1 H43 H2 H 0 1 N N N N N N -9.387 10.508 42.085 7.602 4.247 -0.028 H43 YB1 38 YB1 H42 H3 H 0 1 N N N N N N -9.754 8.784 42.432 6.279 3.862 -1.254 H42 YB1 39 YB1 H48 H4 H 0 1 N N N N N N -12.318 3.387 43.032 4.667 -3.286 0.928 H48 YB1 40 YB1 H50 H5 H 0 1 N N N N N N -9.430 3.895 43.994 7.607 -2.806 0.256 H50 YB1 41 YB1 H49 H6 H 0 1 N N N N N N -10.845 3.529 45.038 6.924 -3.037 1.885 H49 YB1 42 YB1 H51 H7 H 0 1 N N N N N N -9.367 1.480 44.601 7.923 -5.141 0.984 H51 YB1 43 YB1 H52 H8 H 0 1 N N N N N N -11.061 1.259 44.045 6.174 -5.304 1.270 H52 YB1 44 YB1 H54 H9 H 0 1 N N N N N N -10.166 1.677 40.538 4.680 -5.281 -0.646 H54 YB1 45 YB1 H53 H10 H 0 1 N N N N N N -11.545 1.525 41.680 5.387 -5.102 -2.270 H53 YB1 46 YB1 H56 H11 H 0 1 N N N N N N -11.254 3.925 40.786 4.294 -2.996 -1.490 H56 YB1 47 YB1 H55 H12 H 0 1 N N N N N N -9.645 3.981 41.581 6.043 -2.782 -1.751 H55 YB1 48 YB1 H58 H13 H 0 1 N N N N N N -15.249 11.065 48.966 -1.641 2.932 -1.718 H58 YB1 49 YB1 H57 H14 H 0 1 N N N N N N -14.995 9.516 49.838 -1.873 3.199 0.036 H57 YB1 50 YB1 H38 H15 H 0 1 N N N N N N -12.958 10.224 50.795 -2.284 0.673 -1.577 H38 YB1 51 YB1 H37 H16 H 0 1 N N N N N N -12.725 12.315 48.560 -1.636 1.025 1.435 H37 YB1 52 YB1 H59 H17 H 0 1 N N N N N N -11.615 9.449 48.607 0.585 0.412 0.687 H59 YB1 53 YB1 H60 H18 H 0 1 N N N N N N -11.880 10.522 47.191 -0.036 -0.033 -0.936 H60 YB1 54 YB1 H61 H19 H 0 1 N N N N N N -10.689 11.015 50.475 -2.043 -1.497 -0.180 H61 YB1 55 YB1 H62 H20 H 0 1 N N N N N N -10.528 12.564 49.579 -2.274 -1.231 1.575 H62 YB1 56 YB1 H64 H21 H 0 1 N N N N N N -14.023 13.112 50.398 -3.877 1.732 0.795 H64 YB1 57 YB1 H63 H22 H 0 1 N N N N N N -14.017 12.173 51.929 -4.499 1.292 -0.829 H63 YB1 58 YB1 H39 H23 H 0 1 N N N N N N -13.450 6.423 46.319 1.749 0.222 -0.557 H39 YB1 59 YB1 H40 H24 H 0 1 N N N N N N -12.852 10.657 45.452 3.187 4.202 0.176 H40 YB1 60 YB1 H45 H25 H 0 1 N N N N N N -12.080 9.040 41.240 4.650 5.305 0.051 H45 YB1 61 YB1 H44 H26 H 0 1 N N N N N N -11.713 10.764 40.893 5.973 5.689 1.277 H44 YB1 62 YB1 H47 H27 H 0 1 N N N N N N -11.962 5.785 42.160 5.572 -0.993 1.434 H47 YB1 63 YB1 H46 H28 H 0 1 N N N N N N -10.402 5.833 43.050 6.085 -0.861 -0.266 H46 YB1 64 YB1 H66 H29 H 0 1 N N N N N N -9.497 12.497 51.591 -6.423 0.283 0.837 H66 YB1 65 YB1 H65 H30 H 0 1 N N N N N N -9.539 14.284 51.763 -6.266 -0.198 -0.869 H65 YB1 66 YB1 H67 H31 H 0 1 N N N N N N -9.601 14.160 54.165 -7.109 -2.461 -0.309 H67 YB1 67 YB1 H68 H32 H 0 1 N N N N N N -10.010 12.411 54.143 -7.266 -1.980 1.398 H68 YB1 68 YB1 H69 H33 H 0 1 N N N N N N -7.742 10.647 53.707 -8.857 -1.259 -2.081 H69 YB1 69 YB1 H70 H34 H 0 1 N N N N N N -6.986 14.781 53.928 -9.389 -0.469 1.935 H70 YB1 70 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YB1 N1 C2 SING N N 1 YB1 N1 C21 SING N N 2 YB1 N1 C24 SING N N 3 YB1 C2 O3 DOUB N N 4 YB1 C2 C4 SING N N 5 YB1 C4 C5 DOUB Y N 6 YB1 C4 C9 SING Y N 7 YB1 C5 C6 SING Y N 8 YB1 C6 N7 DOUB Y N 9 YB1 C6 O13 SING N N 10 YB1 N7 C8 SING Y N 11 YB1 C8 C9 DOUB Y N 12 YB1 C8 C10 SING N N 13 YB1 C10 C11 SING N N 14 YB1 C10 C12 SING N N 15 YB1 C11 C12 SING N N 16 YB1 O13 C14 SING N N 17 YB1 C14 C15 SING N N 18 YB1 C15 C16 SING N N 19 YB1 C15 C20 SING N N 20 YB1 C16 C17 SING N N 21 YB1 C17 O18 SING N N 22 YB1 O18 C19 SING N N 23 YB1 C19 C20 SING N N 24 YB1 C21 C22 SING N N 25 YB1 C22 C23 SING N N 26 YB1 C22 C27 SING N N 27 YB1 C23 C24 SING N N 28 YB1 C23 C25 SING N N 29 YB1 C25 N26 SING N N 30 YB1 N26 C27 SING N N 31 YB1 N26 C28 SING N N 32 YB1 C28 O29 DOUB N N 33 YB1 C28 C30 SING N N 34 YB1 C30 C31 SING N N 35 YB1 C31 C32 SING N N 36 YB1 C32 C33 DOUB Y N 37 YB1 C32 N36 SING Y N 38 YB1 C33 N34 SING Y N 39 YB1 N34 N35 DOUB Y N 40 YB1 N35 N36 SING Y N 41 YB1 C10 H41 SING N N 42 YB1 C11 H43 SING N N 43 YB1 C11 H42 SING N N 44 YB1 C15 H48 SING N N 45 YB1 C16 H50 SING N N 46 YB1 C16 H49 SING N N 47 YB1 C17 H51 SING N N 48 YB1 C17 H52 SING N N 49 YB1 C19 H54 SING N N 50 YB1 C19 H53 SING N N 51 YB1 C20 H56 SING N N 52 YB1 C20 H55 SING N N 53 YB1 C21 H58 SING N N 54 YB1 C21 H57 SING N N 55 YB1 C22 H38 SING N N 56 YB1 C23 H37 SING N N 57 YB1 C24 H59 SING N N 58 YB1 C24 H60 SING N N 59 YB1 C25 H61 SING N N 60 YB1 C25 H62 SING N N 61 YB1 C27 H64 SING N N 62 YB1 C27 H63 SING N N 63 YB1 C5 H39 SING N N 64 YB1 C9 H40 SING N N 65 YB1 C12 H45 SING N N 66 YB1 C12 H44 SING N N 67 YB1 C14 H47 SING N N 68 YB1 C14 H46 SING N N 69 YB1 C30 H66 SING N N 70 YB1 C30 H65 SING N N 71 YB1 C31 H67 SING N N 72 YB1 C31 H68 SING N N 73 YB1 C33 H69 SING N N 74 YB1 N36 H70 SING N N 75 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YB1 SMILES ACDLabs 12.01 "O=C(CCc1cnn[NH]1)N1CC2CN(CC2C1)C(=O)c1cc(OCC2CCOCC2)nc(c1)C1CC1" YB1 InChI InChI 1.06 "InChI=1S/C26H34N6O4/c33-25(4-3-22-11-27-30-29-22)31-12-20-14-32(15-21(20)13-31)26(34)19-9-23(18-1-2-18)28-24(10-19)36-16-17-5-7-35-8-6-17/h9-11,17-18,20-21H,1-8,12-16H2,(H,27,29,30)" YB1 InChIKey InChI 1.06 XSPZRFRUMUKODI-UHFFFAOYSA-N YB1 SMILES_CANONICAL CACTVS 3.385 "O=C(CCc1[nH]nnc1)N2C[C@H]3CN(C[C@@H]3C2)C(=O)c4cc(OCC5CCOCC5)nc(c4)C6CC6" YB1 SMILES CACTVS 3.385 "O=C(CCc1[nH]nnc1)N2C[CH]3CN(C[CH]3C2)C(=O)c4cc(OCC5CCOCC5)nc(c4)C6CC6" YB1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c(cc(nc1C2CC2)OCC3CCOCC3)C(=O)N4C[C@@H]5CN(C[C@H]5C4)C(=O)CCc6cnn[nH]6" YB1 SMILES "OpenEye OEToolkits" 2.0.7 "c1c(cc(nc1C2CC2)OCC3CCOCC3)C(=O)N4CC5CN(CC5C4)C(=O)CCc6cnn[nH]6" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YB1 "SYSTEMATIC NAME" ACDLabs 12.01 "1-[(3aR,6aS)-5-{2-cyclopropyl-6-[(oxan-4-yl)methoxy]pyridine-4-carbonyl}hexahydropyrrolo[3,4-c]pyrrol-2(1H)-yl]-3-(1H-1,2,3-triazol-5-yl)propan-1-one" YB1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1-[(3~{a}~{S},6~{a}~{S})-5-[2-cyclopropyl-6-(oxan-4-ylmethoxy)pyridin-4-yl]carbonyl-1,3,3~{a},4,6,6~{a}-hexahydropyrrolo[3,4-c]pyrrol-2-yl]-3-(1~{H}-1,2,3-triazol-5-yl)propan-1-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YB1 "Create component" 2023-06-12 RCSB YB1 "Initial release" 2024-12-18 RCSB #