data_YB3 # _chem_comp.id YB3 _chem_comp.name "2-(8-fluoranyl-2-methyl-imidazo[1,2-a]pyridin-6-yl)-6-(4-methylpiperazin-1-yl)quinazoline" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H21 F N6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-11-30 _chem_comp.pdbx_modified_date 2024-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 376.430 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YB3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8R8P _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YB3 C12 C1 C 0 1 Y N N N N N 10.448 29.569 33.770 3.070 1.405 -0.185 C12 YB3 1 YB3 C13 C2 C 0 1 Y N N N N N 9.309 30.285 34.171 3.556 0.098 -0.309 C13 YB3 2 YB3 C14 C3 C 0 1 Y N N N N N 8.422 30.771 33.197 2.689 -0.974 -0.353 C14 YB3 3 YB3 C16 C4 C 0 1 Y N N N N N 9.801 29.808 31.451 0.824 0.583 -0.145 C16 YB3 4 YB3 C19 C5 C 0 1 Y N N N N N 9.041 29.990 29.224 -1.326 -0.246 -0.119 C19 YB3 5 YB3 C21 C6 C 0 1 Y N N N N N 7.757 30.943 30.863 0.376 -1.798 -0.315 C21 YB3 6 YB3 C22 C7 C 0 1 N N N N N N 8.254 29.074 37.361 6.876 -1.323 0.491 C22 YB3 7 YB3 C23 C8 C 0 1 N N N N N N 9.487 29.577 36.578 5.381 -1.046 0.662 C23 YB3 8 YB3 C26 C9 C 0 1 N N N N N N 7.046 31.154 36.799 7.169 0.867 -0.497 C26 YB3 9 YB3 C1 C10 C 0 1 Y N N N N N 9.174 29.667 27.802 -2.783 0.012 -0.036 C1 YB3 10 YB3 C2 C11 C 0 1 Y N N N N N 10.334 28.939 27.367 -3.260 1.339 0.090 C2 YB3 11 YB3 C3 C12 C 0 1 Y N N N N N 10.441 28.633 26.030 -4.598 1.565 0.166 C3 YB3 12 YB3 C5 C13 C 0 1 Y N N N N N 9.472 28.993 25.125 -5.492 0.472 0.117 C5 YB3 13 YB3 N6 N1 N 0 1 Y N N N N N 8.401 29.685 25.648 -5.004 -0.803 -0.005 N6 YB3 14 YB3 C7 C14 C 0 1 Y N N N N N 8.161 30.074 26.953 -3.662 -1.027 -0.086 C7 YB3 15 YB3 C8 C15 C 0 1 Y N N N N N 7.583 29.926 24.569 -6.083 -1.645 -0.025 C8 YB3 16 YB3 C9 C16 C 0 1 Y N N N N N 8.218 29.374 23.486 -7.189 -0.877 0.083 C9 YB3 17 YB3 C10 C17 C 0 1 N N N N N N 7.650 29.428 22.095 -8.610 -1.380 0.108 C10 YB3 18 YB3 N11 N2 N 0 1 Y N N N N N 9.405 28.785 23.827 -6.814 0.401 0.174 N11 YB3 19 YB3 C15 C18 C 0 1 Y N N N N N 8.660 30.516 31.844 1.309 -0.745 -0.272 C15 YB3 20 YB3 C17 C19 C 0 1 Y N N N N N 10.700 29.338 32.413 1.735 1.651 -0.099 C17 YB3 21 YB3 N18 N3 N 0 1 Y N N N N N 10.022 29.569 30.104 -0.497 0.780 -0.073 N18 YB3 22 YB3 N20 N4 N 0 1 Y N N N N N 7.941 30.683 29.561 -0.905 -1.505 -0.237 N20 YB3 23 YB3 N24 N5 N 0 1 N N N N N N 9.047 30.501 35.519 4.933 -0.123 -0.390 N24 YB3 24 YB3 C25 C20 C 0 1 N N N N N N 8.279 31.653 36.023 5.674 1.145 -0.326 C25 YB3 25 YB3 N27 N6 N 0 1 N N N N N N 7.379 30.185 37.917 7.617 -0.056 0.555 N27 YB3 26 YB3 C28 C21 C 0 1 N N N N N N 8.110 30.906 39.034 9.066 -0.288 0.470 C28 YB3 27 YB3 F4 F1 F 0 1 N N N N N N 11.521 27.970 25.594 -5.070 2.825 0.287 F4 YB3 28 YB3 H12 H1 H 0 1 N N N N N N 11.135 29.194 34.514 3.766 2.230 -0.152 H12 YB3 29 YB3 H14 H2 H 0 1 N N N N N N 7.555 31.342 33.494 3.070 -1.980 -0.450 H14 YB3 30 YB3 H21 H3 H 0 1 N N N N N N 6.883 31.501 31.165 0.703 -2.823 -0.411 H21 YB3 31 YB3 H22A H4 H 0 0 N N N N N N 7.643 28.458 36.685 7.217 -1.985 1.287 H22A YB3 32 YB3 H22B H5 H 0 0 N N N N N N 8.606 28.458 38.201 7.050 -1.797 -0.475 H22B YB3 33 YB3 H23B H6 H 0 0 N N N N N N 10.009 28.721 36.125 4.826 -1.981 0.586 H23B YB3 34 YB3 H23A H7 H 0 0 N N N N N N 10.169 30.102 37.264 5.204 -0.597 1.639 H23A YB3 35 YB3 H26A H8 H 0 0 N N N N N N 6.535 32.025 37.235 7.346 0.418 -1.474 H26A YB3 36 YB3 H26B H9 H 0 0 N N N N N N 6.372 30.649 36.092 7.724 1.802 -0.421 H26B YB3 37 YB3 H2 H10 H 0 1 N N N N N N 11.099 28.641 28.069 -2.566 2.165 0.127 H2 YB3 38 YB3 H7 H11 H 0 1 N N N N N N 7.290 30.628 27.270 -3.292 -2.037 -0.182 H7 YB3 39 YB3 H8 H12 H 0 1 N N N N N N 6.635 30.444 24.574 -6.056 -2.721 -0.112 H8 YB3 40 YB3 H10C H13 H 0 0 N N N N N N 8.335 28.922 21.399 -9.001 -1.415 -0.908 H10C YB3 41 YB3 H10B H14 H 0 0 N N N N N N 6.673 28.924 22.078 -8.633 -2.380 0.541 H10B YB3 42 YB3 H10A H15 H 0 0 N N N N N N 7.526 30.478 21.790 -9.222 -0.709 0.711 H10A YB3 43 YB3 H17 H16 H 0 1 N N N N N N 11.585 28.799 32.110 1.376 2.665 -0.003 H17 YB3 44 YB3 H25A H17 H 0 0 N N N N N N 8.915 32.252 36.692 5.500 1.619 0.641 H25A YB3 45 YB3 H25B H18 H 0 0 N N N N N N 7.952 32.273 35.176 5.333 1.806 -1.122 H25B YB3 46 YB3 H28C H20 H 0 0 N N N N N N 8.346 30.194 39.838 9.300 -0.782 -0.473 H28C YB3 47 YB3 H28B H21 H 0 0 N N N N N N 9.042 31.339 38.642 9.590 0.666 0.520 H28B YB3 48 YB3 H28A H22 H 0 0 N N N N N N 7.472 31.709 39.431 9.382 -0.920 1.300 H28A YB3 49 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YB3 C10 C9 SING N N 1 YB3 C9 N11 SING Y N 2 YB3 C9 C8 DOUB Y N 3 YB3 N11 C5 DOUB Y N 4 YB3 C8 N6 SING Y N 5 YB3 C5 N6 SING Y N 6 YB3 C5 C3 SING Y N 7 YB3 F4 C3 SING N N 8 YB3 N6 C7 SING Y N 9 YB3 C3 C2 DOUB Y N 10 YB3 C7 C1 DOUB Y N 11 YB3 C2 C1 SING Y N 12 YB3 C1 C19 SING N N 13 YB3 C19 N20 DOUB Y N 14 YB3 C19 N18 SING Y N 15 YB3 N20 C21 SING Y N 16 YB3 N18 C16 DOUB Y N 17 YB3 C21 C15 DOUB Y N 18 YB3 C16 C15 SING Y N 19 YB3 C16 C17 SING Y N 20 YB3 C15 C14 SING Y N 21 YB3 C17 C12 DOUB Y N 22 YB3 C14 C13 DOUB Y N 23 YB3 C12 C13 SING Y N 24 YB3 C13 N24 SING N N 25 YB3 N24 C25 SING N N 26 YB3 N24 C23 SING N N 27 YB3 C25 C26 SING N N 28 YB3 C23 C22 SING N N 29 YB3 C26 N27 SING N N 30 YB3 C22 N27 SING N N 31 YB3 N27 C28 SING N N 32 YB3 C12 H12 SING N N 33 YB3 C14 H14 SING N N 34 YB3 C21 H21 SING N N 35 YB3 C22 H22A SING N N 36 YB3 C22 H22B SING N N 37 YB3 C23 H23B SING N N 38 YB3 C23 H23A SING N N 39 YB3 C26 H26A SING N N 40 YB3 C26 H26B SING N N 41 YB3 C2 H2 SING N N 42 YB3 C7 H7 SING N N 43 YB3 C8 H8 SING N N 44 YB3 C10 H10C SING N N 45 YB3 C10 H10B SING N N 46 YB3 C10 H10A SING N N 47 YB3 C17 H17 SING N N 48 YB3 C25 H25A SING N N 49 YB3 C25 H25B SING N N 50 YB3 C28 H28C SING N N 51 YB3 C28 H28B SING N N 52 YB3 C28 H28A SING N N 53 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YB3 InChI InChI 1.06 "InChI=1S/C21H21FN6/c1-14-12-28-13-16(10-18(22)21(28)24-14)20-23-11-15-9-17(3-4-19(15)25-20)27-7-5-26(2)6-8-27/h3-4,9-13H,5-8H2,1-2H3" YB3 InChIKey InChI 1.06 BAUHPLMKUXWNJQ-UHFFFAOYSA-N YB3 SMILES_CANONICAL CACTVS 3.385 "CN1CCN(CC1)c2ccc3nc(ncc3c2)c4cn5cc(C)nc5c(F)c4" YB3 SMILES CACTVS 3.385 "CN1CCN(CC1)c2ccc3nc(ncc3c2)c4cn5cc(C)nc5c(F)c4" YB3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cn2cc(cc(c2n1)F)c3ncc4cc(ccc4n3)N5CCN(CC5)C" YB3 SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cn2cc(cc(c2n1)F)c3ncc4cc(ccc4n3)N5CCN(CC5)C" # _pdbx_chem_comp_identifier.comp_id YB3 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-(8-fluoranyl-2-methyl-imidazo[1,2-a]pyridin-6-yl)-6-(4-methylpiperazin-1-yl)quinazoline" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YB3 "Create component" 2023-11-30 PDBE YB3 "Initial release" 2024-03-06 RCSB #