data_YB4 # _chem_comp.id YB4 _chem_comp.name "~{N}-(2,6-diethylphenyl)-2-[[4-(4-methylpiperazin-1-yl)-2-(propanoylamino)phenyl]amino]-5,6-dihydropyrimido[4,5-e]indolizine-7-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C35 H42 N8 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-02-15 _chem_comp.pdbx_modified_date 2022-02-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 606.760 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YB4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7LQD _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YB4 C4 C1 C 0 1 Y N N 67.408 64.991 47.431 5.257 1.378 0.586 C4 YB4 1 YB4 C14 C2 C 0 1 Y N N 69.486 70.864 45.217 0.567 1.988 -0.277 C14 YB4 2 YB4 C5 C3 C 0 1 Y N N 67.560 66.245 46.916 3.967 0.886 0.653 C5 YB4 3 YB4 C6 C4 C 0 1 Y N N 67.477 67.374 47.751 3.725 -0.461 0.430 C6 YB4 4 YB4 C11 C5 C 0 1 N N N 71.036 70.373 43.196 -1.885 2.498 -0.273 C11 YB4 5 YB4 C7 C6 C 0 1 N N N 72.223 66.758 40.549 -5.820 0.247 -0.055 C7 YB4 6 YB4 C8 C7 C 0 1 Y N N 71.468 66.830 41.807 -4.444 -0.175 0.258 C8 YB4 7 YB4 C9 C8 C 0 1 Y N N 71.040 65.736 42.631 -4.035 -1.393 0.973 C9 YB4 8 YB4 C10 C9 C 0 1 Y N N 70.379 66.245 43.702 -2.691 -1.368 1.037 C10 YB4 9 YB4 C12 C10 C 0 1 N N N 71.195 69.415 42.025 -3.124 1.777 -0.807 C12 YB4 10 YB4 C13 C11 C 0 1 Y N N 71.038 67.993 42.444 -3.299 0.481 -0.056 C13 YB4 11 YB4 N1 N1 N 0 1 Y N N 70.367 67.635 43.608 -2.241 -0.238 0.427 N1 YB4 12 YB4 N2 N2 N 0 1 N N N 67.633 68.656 47.228 2.415 -0.959 0.498 N2 YB4 13 YB4 C3 C12 C 0 1 Y N N 67.141 64.788 48.813 6.314 0.524 0.296 C3 YB4 14 YB4 N3 N3 N 0 1 Y N N 69.002 68.187 45.445 0.108 -0.571 0.468 N3 YB4 15 YB4 C1 C13 C 0 1 Y N N 67.220 67.195 49.119 4.784 -1.320 0.139 C1 YB4 16 YB4 C2 C14 C 0 1 Y N N 67.063 65.916 49.644 6.077 -0.826 0.078 C2 YB4 17 YB4 C15 C15 C 0 1 Y N N 70.099 69.931 44.289 -0.733 1.552 -0.089 C15 YB4 18 YB4 C16 C16 C 0 1 Y N N 69.816 68.593 44.463 -0.933 0.222 0.278 C16 YB4 19 YB4 C17 C17 C 0 1 Y N N 68.469 69.108 46.264 1.340 -0.111 0.293 C17 YB4 20 YB4 N4 N4 N 0 1 Y N N 68.675 70.435 46.177 1.566 1.140 -0.084 N4 YB4 21 YB4 N5 N5 N 0 1 N N N 67.117 68.326 49.964 4.541 -2.682 -0.086 N5 YB4 22 YB4 N6 N6 N 0 1 N N N 67.028 63.489 49.328 7.618 1.026 0.224 N6 YB4 23 YB4 C18 C18 C 0 1 N N N 67.308 62.300 48.505 8.229 0.721 -1.077 C18 YB4 24 YB4 C19 C19 C 0 1 N N N 66.459 61.107 48.876 9.677 1.215 -1.087 C19 YB4 25 YB4 N7 N7 N 0 1 N N N 66.556 60.838 50.308 9.700 2.661 -0.824 N7 YB4 26 YB4 C20 C20 C 0 1 N N N 65.976 61.982 51.008 9.089 2.967 0.477 C20 YB4 27 YB4 C21 C21 C 0 1 N N N 66.789 63.231 50.759 7.641 2.472 0.487 C21 YB4 28 YB4 C22 C22 C 0 1 N N N 65.874 59.592 50.662 11.069 3.188 -0.900 C22 YB4 29 YB4 N8 N8 N 0 1 N N N 72.298 65.549 39.952 -6.863 -0.518 0.326 N8 YB4 30 YB4 O1 O1 O 0 1 N N N 72.764 67.757 40.093 -6.016 1.285 -0.657 O1 YB4 31 YB4 C23 C23 C 0 1 Y N N 73.147 65.238 38.854 -8.161 -0.177 -0.067 C23 YB4 32 YB4 C24 C24 C 0 1 Y N N 74.460 64.840 39.105 -8.711 1.036 0.325 C24 YB4 33 YB4 C25 C25 C 0 1 Y N N 75.270 64.549 38.007 -9.993 1.370 -0.065 C25 YB4 34 YB4 C26 C26 C 0 1 Y N N 74.807 64.678 36.717 -10.729 0.498 -0.846 C26 YB4 35 YB4 C27 C27 C 0 1 Y N N 73.512 65.091 36.495 -10.184 -0.711 -1.238 C27 YB4 36 YB4 C28 C28 C 0 1 Y N N 72.657 65.391 37.557 -8.900 -1.049 -0.856 C28 YB4 37 YB4 C29 C29 C 0 1 N N N 74.995 64.679 40.509 -7.910 1.987 1.177 C29 YB4 38 YB4 C30 C30 C 0 1 N N N 71.242 65.845 37.291 -8.308 -2.366 -1.284 C30 YB4 39 YB4 C31 C31 C 0 1 N N N 70.206 64.818 37.637 -8.506 -3.400 -0.173 C31 YB4 40 YB4 C32 C32 C 0 1 N N N 76.191 65.534 40.818 -8.566 3.369 1.153 C32 YB4 41 YB4 C33 C33 C 0 1 N N N 67.868 68.568 51.058 5.530 -3.580 0.091 C33 YB4 42 YB4 C34 C34 C 0 1 N N N 67.442 69.781 51.855 5.307 -5.027 -0.269 C34 YB4 43 YB4 O2 O2 O 0 1 N N N 68.811 67.865 51.382 6.599 -3.225 0.540 O2 YB4 44 YB4 C35 C35 C 0 1 N N N 67.748 71.085 51.175 6.577 -5.827 0.027 C35 YB4 45 YB4 H1 H1 H 0 1 N N N 67.492 64.136 46.777 5.443 2.428 0.756 H1 YB4 46 YB4 H2 H2 H 0 1 N N N 69.692 71.920 45.125 0.764 3.005 -0.582 H2 YB4 47 YB4 H3 H3 H 0 1 N N N 67.745 66.372 45.860 3.147 1.552 0.879 H3 YB4 48 YB4 H4 H4 H 0 1 N N N 72.029 70.524 43.645 -1.595 3.279 -0.976 H4 YB4 49 YB4 H5 H5 H 0 1 N N N 70.664 71.329 42.800 -2.126 2.956 0.687 H5 YB4 50 YB4 H6 H6 H 0 1 N N N 71.214 64.689 42.433 -4.686 -2.157 1.370 H6 YB4 51 YB4 H7 H7 H 0 1 N N N 69.934 65.666 44.498 -2.070 -2.122 1.497 H7 YB4 52 YB4 H8 H8 H 0 1 N N N 72.196 69.549 41.590 -4.003 2.405 -0.661 H8 YB4 53 YB4 H9 H9 H 0 1 N N N 70.432 69.649 41.268 -2.995 1.569 -1.869 H9 YB4 54 YB4 H10 H10 H 0 1 N N N 67.034 69.350 47.627 2.262 -1.898 0.689 H10 YB4 55 YB4 H11 H11 H 0 1 N N N 66.879 65.790 50.701 6.899 -1.489 -0.148 H11 YB4 56 YB4 H12 H12 H 0 1 N N N 66.424 69.008 49.728 3.662 -2.978 -0.368 H12 YB4 57 YB4 H13 H13 H 0 1 N N N 68.367 62.029 48.631 8.211 -0.356 -1.243 H13 YB4 58 YB4 H14 H14 H 0 1 N N N 67.117 62.551 47.451 7.669 1.220 -1.868 H14 YB4 59 YB4 H15 H15 H 0 1 N N N 65.410 61.314 48.616 10.244 0.696 -0.314 H15 YB4 60 YB4 H16 H16 H 0 1 N N N 66.808 60.226 48.317 10.123 1.016 -2.061 H16 YB4 61 YB4 H18 H18 H 0 1 N N N 64.949 62.142 50.648 9.649 2.467 1.268 H18 YB4 62 YB4 H19 H19 H 0 1 N N N 65.958 61.773 52.088 9.107 4.044 0.643 H19 YB4 63 YB4 H20 H20 H 0 1 N N N 67.761 63.122 51.262 7.074 2.991 -0.286 H20 YB4 64 YB4 H21 H21 H 0 1 N N N 66.250 64.090 51.184 7.195 2.672 1.461 H21 YB4 65 YB4 H22 H22 H 0 1 N N N 65.965 59.418 51.744 11.473 3.007 -1.896 H22 YB4 66 YB4 H23 H23 H 0 1 N N N 64.811 59.666 50.391 11.057 4.260 -0.702 H23 YB4 67 YB4 H24 H24 H 0 1 N N N 66.334 58.755 50.116 11.693 2.688 -0.159 H24 YB4 68 YB4 H25 H25 H 0 1 N N N 71.714 64.819 40.308 -6.712 -1.305 0.873 H25 YB4 69 YB4 H26 H26 H 0 1 N N N 76.284 64.215 38.173 -10.421 2.314 0.239 H26 YB4 70 YB4 H27 H27 H 0 1 N N N 75.456 64.456 35.883 -11.731 0.761 -1.149 H27 YB4 71 YB4 H28 H28 H 0 1 N N N 73.152 65.184 35.481 -10.761 -1.390 -1.848 H28 YB4 72 YB4 H29 H29 H 0 1 N N N 74.193 64.941 41.215 -7.877 1.618 2.202 H29 YB4 73 YB4 H30 H30 H 0 1 N N N 75.279 63.626 40.651 -6.895 2.060 0.784 H30 YB4 74 YB4 H31 H31 H 0 1 N N N 71.049 66.748 37.888 -8.803 -2.710 -2.192 H31 YB4 75 YB4 H32 H32 H 0 1 N N N 71.149 66.086 36.222 -7.242 -2.240 -1.477 H32 YB4 76 YB4 H33 H33 H 0 1 N N N 69.205 65.218 37.418 -8.088 -3.017 0.758 H33 YB4 77 YB4 H34 H34 H 0 1 N N N 70.377 63.910 37.041 -9.571 -3.592 -0.041 H34 YB4 78 YB4 H35 H35 H 0 1 N N N 70.276 64.573 38.707 -8.001 -4.327 -0.445 H35 YB4 79 YB4 H36 H36 H 0 1 N N N 76.513 65.355 41.855 -8.670 3.705 0.121 H36 YB4 80 YB4 H37 H37 H 0 1 N N N 77.011 65.279 40.130 -9.550 3.312 1.617 H37 YB4 81 YB4 H38 H38 H 0 1 N N N 75.925 66.594 40.695 -7.945 4.076 1.704 H38 YB4 82 YB4 H39 H39 H 0 1 N N N 66.357 69.723 52.023 4.481 -5.424 0.321 H39 YB4 83 YB4 H40 H40 H 0 1 N N N 67.965 69.762 52.823 5.067 -5.104 -1.329 H40 YB4 84 YB4 H41 H41 H 0 1 N N N 67.412 71.918 51.810 6.416 -6.873 -0.233 H41 YB4 85 YB4 H42 H42 H 0 1 N N N 68.832 71.166 51.008 7.403 -5.429 -0.562 H42 YB4 86 YB4 H43 H43 H 0 1 N N N 67.224 71.126 50.209 6.817 -5.749 1.088 H43 YB4 87 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YB4 C27 C26 DOUB Y N 1 YB4 C27 C28 SING Y N 2 YB4 C26 C25 SING Y N 3 YB4 C30 C28 SING N N 4 YB4 C30 C31 SING N N 5 YB4 C28 C23 DOUB Y N 6 YB4 C25 C24 DOUB Y N 7 YB4 C23 C24 SING Y N 8 YB4 C23 N8 SING N N 9 YB4 C24 C29 SING N N 10 YB4 N8 C7 SING N N 11 YB4 O1 C7 DOUB N N 12 YB4 C29 C32 SING N N 13 YB4 C7 C8 SING N N 14 YB4 C8 C13 DOUB Y N 15 YB4 C8 C9 SING Y N 16 YB4 C12 C13 SING N N 17 YB4 C12 C11 SING N N 18 YB4 C13 N1 SING Y N 19 YB4 C9 C10 DOUB Y N 20 YB4 C11 C15 SING N N 21 YB4 N1 C10 SING Y N 22 YB4 N1 C16 SING N N 23 YB4 C15 C16 DOUB Y N 24 YB4 C15 C14 SING Y N 25 YB4 C16 N3 SING Y N 26 YB4 C14 N4 DOUB Y N 27 YB4 N3 C17 DOUB Y N 28 YB4 N4 C17 SING Y N 29 YB4 C17 N2 SING N N 30 YB4 C5 C4 DOUB Y N 31 YB4 C5 C6 SING Y N 32 YB4 N2 C6 SING N N 33 YB4 C4 C3 SING Y N 34 YB4 C6 C1 DOUB Y N 35 YB4 C18 C19 SING N N 36 YB4 C18 N6 SING N N 37 YB4 C3 N6 SING N N 38 YB4 C3 C2 DOUB Y N 39 YB4 C19 N7 SING N N 40 YB4 C1 C2 SING Y N 41 YB4 C1 N5 SING N N 42 YB4 N6 C21 SING N N 43 YB4 N5 C33 SING N N 44 YB4 N7 C22 SING N N 45 YB4 N7 C20 SING N N 46 YB4 C21 C20 SING N N 47 YB4 C33 O2 DOUB N N 48 YB4 C33 C34 SING N N 49 YB4 C35 C34 SING N N 50 YB4 C4 H1 SING N N 51 YB4 C14 H2 SING N N 52 YB4 C5 H3 SING N N 53 YB4 C11 H4 SING N N 54 YB4 C11 H5 SING N N 55 YB4 C9 H6 SING N N 56 YB4 C10 H7 SING N N 57 YB4 C12 H8 SING N N 58 YB4 C12 H9 SING N N 59 YB4 N2 H10 SING N N 60 YB4 C2 H11 SING N N 61 YB4 N5 H12 SING N N 62 YB4 C18 H13 SING N N 63 YB4 C18 H14 SING N N 64 YB4 C19 H15 SING N N 65 YB4 C19 H16 SING N N 66 YB4 C20 H18 SING N N 67 YB4 C20 H19 SING N N 68 YB4 C21 H20 SING N N 69 YB4 C21 H21 SING N N 70 YB4 C22 H22 SING N N 71 YB4 C22 H23 SING N N 72 YB4 C22 H24 SING N N 73 YB4 N8 H25 SING N N 74 YB4 C25 H26 SING N N 75 YB4 C26 H27 SING N N 76 YB4 C27 H28 SING N N 77 YB4 C29 H29 SING N N 78 YB4 C29 H30 SING N N 79 YB4 C30 H31 SING N N 80 YB4 C30 H32 SING N N 81 YB4 C31 H33 SING N N 82 YB4 C31 H34 SING N N 83 YB4 C31 H35 SING N N 84 YB4 C32 H36 SING N N 85 YB4 C32 H37 SING N N 86 YB4 C32 H38 SING N N 87 YB4 C34 H39 SING N N 88 YB4 C34 H40 SING N N 89 YB4 C35 H41 SING N N 90 YB4 C35 H42 SING N N 91 YB4 C35 H43 SING N N 92 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YB4 InChI InChI 1.03 "InChI=1S/C35H42N8O2/c1-5-23-9-8-10-24(6-2)32(23)39-34(45)27-15-16-43-30(27)14-11-25-22-36-35(40-33(25)43)38-28-13-12-26(21-29(28)37-31(44)7-3)42-19-17-41(4)18-20-42/h8-10,12-13,15-16,21-22H,5-7,11,14,17-20H2,1-4H3,(H,37,44)(H,39,45)(H,36,38,40)" YB4 InChIKey InChI 1.03 OFKCTLDDZSLLFR-UHFFFAOYSA-N YB4 SMILES_CANONICAL CACTVS 3.385 "CCC(=O)Nc1cc(ccc1Nc2ncc3CCc4n(ccc4C(=O)Nc5c(CC)cccc5CC)c3n2)N6CCN(C)CC6" YB4 SMILES CACTVS 3.385 "CCC(=O)Nc1cc(ccc1Nc2ncc3CCc4n(ccc4C(=O)Nc5c(CC)cccc5CC)c3n2)N6CCN(C)CC6" YB4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCc1cccc(c1NC(=O)c2ccn-3c2CCc4c3nc(nc4)Nc5ccc(cc5NC(=O)CC)N6CCN(CC6)C)CC" YB4 SMILES "OpenEye OEToolkits" 2.0.7 "CCc1cccc(c1NC(=O)c2ccn-3c2CCc4c3nc(nc4)Nc5ccc(cc5NC(=O)CC)N6CCN(CC6)C)CC" # _pdbx_chem_comp_identifier.comp_id YB4 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-(2,6-diethylphenyl)-2-[[4-(4-methylpiperazin-1-yl)-2-(propanoylamino)phenyl]amino]-5,6-dihydropyrimido[4,5-e]indolizine-7-carboxamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YB4 "Create component" 2021-02-15 RCSB YB4 "Initial release" 2022-02-16 RCSB 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