data_YBB # _chem_comp.id YBB _chem_comp.name "4-(pyrrolidin-1-yl)-3-{(E)-2-[4-(trifluoromethoxy)phenyl]ethenyl}benzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H19 F3 N2 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-12 _chem_comp.pdbx_modified_date 2024-12-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 376.372 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YBB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7G65 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YBB C10 C1 C 0 1 Y N N N N N -13.135 8.063 45.252 -2.386 0.204 0.008 C10 YBB 1 YBB C11 C2 C 0 1 Y N N N N N -14.199 7.877 46.167 -2.714 1.557 0.006 C11 YBB 2 YBB C13 C3 C 0 1 Y N N N N N -14.183 10.273 46.740 -5.063 0.975 0.002 C13 YBB 3 YBB C15 C4 C 0 1 Y N N N N N -12.586 9.379 45.108 -3.408 -0.762 0.008 C15 YBB 4 YBB C17 C5 C 0 1 N N N N N N -15.814 8.692 47.747 -4.408 3.377 0.001 C17 YBB 5 YBB C20 C6 C 0 1 N N N N N N -10.255 1.044 41.448 6.357 0.156 -0.004 C20 YBB 6 YBB C24 C7 C 0 1 N N N N N N -10.568 10.677 44.395 -3.635 -2.789 -1.186 C24 YBB 7 YBB C25 C8 C 0 1 N N N N N N -9.795 10.744 43.090 -4.025 -4.216 -0.758 C25 YBB 8 YBB C26 C9 C 0 1 N N N N N N -10.578 9.900 42.067 -3.694 -4.291 0.750 C26 YBB 9 YBB C27 C10 C 0 1 N N N N N N -11.865 9.521 42.757 -3.693 -2.802 1.178 C27 YBB 10 YBB C1 C11 C 0 1 Y N N N N N -10.564 3.925 42.427 3.065 -1.453 -0.003 C1 YBB 11 YBB C2 C12 C 0 1 Y N N N N N -10.970 2.683 42.995 4.071 -0.495 -0.002 C2 YBB 12 YBB C3 C13 C 0 1 Y N N N N N -12.096 2.517 43.800 3.749 0.856 0.000 C3 YBB 13 YBB C4 C14 C 0 1 Y N N N N N -12.832 3.661 44.062 2.429 1.252 0.003 C4 YBB 14 YBB C5 C15 C 0 1 Y N N N N N -12.474 4.882 43.521 1.413 0.292 0.002 C5 YBB 15 YBB C6 C16 C 0 1 Y N N N N N -11.313 5.034 42.724 1.742 -1.067 -0.000 C6 YBB 16 YBB O7 O1 O 0 1 N N N N N N -10.137 1.635 42.663 5.373 -0.881 -0.004 O7 YBB 17 YBB C8 C17 C 0 1 N N N N N N -13.282 5.966 43.929 0.001 0.710 0.005 C8 YBB 18 YBB C9 C18 C 0 1 N N N N N N -12.625 6.881 44.594 -0.974 -0.214 0.005 C9 YBB 19 YBB C12 C19 C 0 1 Y N N N N N -14.692 8.963 46.878 -4.054 1.944 0.003 C12 YBB 20 YBB C14 C20 C 0 1 Y N N N N N -13.135 10.484 45.859 -4.740 -0.364 0.005 C14 YBB 21 YBB N16 N1 N 0 1 N N N N N N -11.500 9.570 44.173 -3.088 -2.112 0.010 N16 YBB 22 YBB O18 O2 O 0 1 N N N N N N -16.565 7.749 47.518 -3.531 4.219 0.001 O18 YBB 23 YBB N19 N2 N 0 1 N N N N N N -16.006 9.580 48.807 -5.703 3.751 -0.002 N19 YBB 24 YBB F21 F1 F 0 1 N N N N N N -9.406 -0.010 41.452 6.201 0.947 1.140 F21 YBB 25 YBB F22 F2 F 0 1 N N N N N N -11.499 0.628 41.185 7.635 -0.413 -0.006 F22 YBB 26 YBB F23 F3 F 0 1 N N N N N N -9.971 1.900 40.475 6.198 0.950 -1.145 F23 YBB 27 YBB H34 H1 H 0 1 N N N N N N -14.625 6.895 46.311 -1.934 2.304 0.006 H34 YBB 28 YBB H35 H2 H 0 1 N N N N N N -14.601 11.091 47.308 -6.100 1.277 0.001 H35 YBB 29 YBB H40 H3 H 0 1 N N N N N N -11.108 11.617 44.582 -2.878 -2.830 -1.969 H40 YBB 30 YBB H39 H4 H 0 1 N N N N N N -9.897 10.465 45.241 -4.515 -2.257 -1.547 H39 YBB 31 YBB H41 H5 H 0 1 N N N N N N -9.723 11.786 42.745 -5.089 -4.383 -0.921 H41 YBB 32 YBB H42 H6 H 0 1 N N N N N N -8.784 10.332 43.227 -3.438 -4.950 -1.311 H42 YBB 33 YBB H44 H7 H 0 1 N N N N N N -10.786 10.489 41.162 -4.464 -4.846 1.287 H44 YBB 34 YBB H43 H8 H 0 1 N N N N N N -10.008 8.999 41.795 -2.713 -4.738 0.908 H43 YBB 35 YBB H46 H9 H 0 1 N N N N N N -12.188 8.511 42.466 -4.711 -2.449 1.348 H46 YBB 36 YBB H45 H10 H 0 1 N N N N N N -12.664 10.242 42.529 -3.084 -2.658 2.071 H45 YBB 37 YBB H28 H11 H 0 1 N N N N N N -9.698 3.990 41.786 3.320 -2.502 -0.009 H28 YBB 38 YBB H29 H12 H 0 1 N N N N N N -12.378 1.553 44.196 4.534 1.598 0.001 H29 YBB 39 YBB H30 H13 H 0 1 N N N N N N -13.701 3.598 44.700 2.180 2.303 0.005 H30 YBB 40 YBB H31 H14 H 0 1 N N N N N N -11.023 6.007 42.356 0.961 -1.812 -0.000 H31 YBB 41 YBB H32 H15 H 0 1 N N N N N N -14.338 6.033 43.713 -0.252 1.760 0.008 H32 YBB 42 YBB H33 H16 H 0 1 N N N N N N -11.557 6.734 44.661 -0.721 -1.265 0.003 H33 YBB 43 YBB H36 H17 H 0 1 N N N N N N -12.728 11.476 45.733 -5.524 -1.107 0.005 H36 YBB 44 YBB H37 H18 H 0 1 N N N N N N -16.785 9.463 49.423 -5.935 4.693 -0.004 H37 YBB 45 YBB H38 H19 H 0 1 N N N N N N -15.364 10.333 48.951 -6.402 3.079 -0.003 H38 YBB 46 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YBB C1 C2 DOUB Y N 1 YBB C1 C6 SING Y N 2 YBB C2 O7 SING N N 3 YBB C2 C3 SING Y N 4 YBB C3 C4 DOUB Y N 5 YBB C4 C5 SING Y N 6 YBB C5 C8 SING N N 7 YBB C5 C6 DOUB Y N 8 YBB O7 C20 SING N N 9 YBB C8 C9 DOUB N E 10 YBB C9 C10 SING N N 11 YBB C10 C15 DOUB Y N 12 YBB C10 C11 SING Y N 13 YBB C11 C12 DOUB Y N 14 YBB C12 C17 SING N N 15 YBB C12 C13 SING Y N 16 YBB C13 C14 DOUB Y N 17 YBB C14 C15 SING Y N 18 YBB C15 N16 SING N N 19 YBB N16 C24 SING N N 20 YBB N16 C27 SING N N 21 YBB C17 O18 DOUB N N 22 YBB C17 N19 SING N N 23 YBB C20 F21 SING N N 24 YBB C20 F22 SING N N 25 YBB C20 F23 SING N N 26 YBB C24 C25 SING N N 27 YBB C25 C26 SING N N 28 YBB C26 C27 SING N N 29 YBB C11 H34 SING N N 30 YBB C13 H35 SING N N 31 YBB C24 H40 SING N N 32 YBB C24 H39 SING N N 33 YBB C25 H41 SING N N 34 YBB C25 H42 SING N N 35 YBB C26 H44 SING N N 36 YBB C26 H43 SING N N 37 YBB C27 H46 SING N N 38 YBB C27 H45 SING N N 39 YBB C1 H28 SING N N 40 YBB C3 H29 SING N N 41 YBB C4 H30 SING N N 42 YBB C6 H31 SING N N 43 YBB C8 H32 SING N N 44 YBB C9 H33 SING N N 45 YBB C14 H36 SING N N 46 YBB N19 H37 SING N N 47 YBB N19 H38 SING N N 48 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YBB SMILES ACDLabs 12.01 "FC(F)(F)Oc1ccc(cc1)/C=C/c1cc(ccc1N1CCCC1)C(N)=O" YBB InChI InChI 1.06 "InChI=1S/C20H19F3N2O2/c21-20(22,23)27-17-8-4-14(5-9-17)3-6-15-13-16(19(24)26)7-10-18(15)25-11-1-2-12-25/h3-10,13H,1-2,11-12H2,(H2,24,26)" YBB InChIKey InChI 1.06 QQRLGTQPIXISFJ-UHFFFAOYSA-N YBB SMILES_CANONICAL CACTVS 3.385 "NC(=O)c1ccc(N2CCCC2)c(/C=C/c3ccc(OC(F)(F)F)cc3)c1" YBB SMILES CACTVS 3.385 "NC(=O)c1ccc(N2CCCC2)c(C=Cc3ccc(OC(F)(F)F)cc3)c1" YBB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1/C=C/c2cc(ccc2N3CCCC3)C(=O)N)OC(F)(F)F" YBB SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1C=Cc2cc(ccc2N3CCCC3)C(=O)N)OC(F)(F)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YBB "SYSTEMATIC NAME" ACDLabs 12.01 "4-(pyrrolidin-1-yl)-3-{(E)-2-[4-(trifluoromethoxy)phenyl]ethenyl}benzamide" YBB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4-pyrrolidin-1-yl-3-[(~{E})-2-[4-(trifluoromethyloxy)phenyl]ethenyl]benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YBB "Create component" 2023-06-12 RCSB YBB "Initial release" 2024-12-18 RCSB #