data_YBC # _chem_comp.id YBC _chem_comp.name "(2~{R},3~{R},4~{S},5~{R},6~{R})-2-(3,4-dichlorophenyl)sulfanyl-6-(hydroxymethyl)-4-[4-(2-oxidanyl-1,3-thiazol-4-yl)-1,2,3-triazol-1-yl]oxane-3,5-diol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H16 Cl2 N4 O5 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-11-30 _chem_comp.pdbx_modified_date 2024-05-31 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 491.369 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YBC _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8R74 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YBC C15 C1 C 0 1 Y N N N N N 29.747 -24.283 -13.239 -3.756 3.682 1.032 C15 YBC 1 YBC C14 C2 C 0 1 Y N N N N N 31.717 -23.733 -14.238 -3.672 1.739 -0.068 C14 YBC 2 YBC C13 C3 C 0 1 Y N N N N N 41.772 -22.611 -12.236 3.841 0.185 1.260 C13 YBC 3 YBC C12 C4 C 0 1 Y N N N N N 41.173 -23.848 -12.430 2.648 -0.356 0.796 C12 YBC 4 YBC C11 C5 C 0 1 Y N N N N N 41.655 -25.005 -11.867 2.238 -0.110 -0.508 C11 YBC 5 YBC C10 C6 C 0 1 Y N N N N N 42.833 -25.022 -11.057 3.015 0.671 -1.341 C10 YBC 6 YBC C8 C7 C 0 1 Y N N N N N 42.883 -22.594 -11.408 4.615 0.966 0.423 C8 YBC 7 YBC C9 C8 C 0 1 Y N N N N N 43.387 -23.814 -10.819 4.203 1.209 -0.877 C9 YBC 8 YBC C6 C9 C 0 1 Y N N N N N 34.093 -23.594 -13.330 -2.698 -0.487 0.704 C6 YBC 9 YBC C5 C10 C 0 1 N N S N N N 36.664 -23.031 -13.295 -1.992 -2.894 0.754 C5 YBC 10 YBC N1 N1 N 0 1 Y N N N N N 33.747 -22.960 -15.515 -3.554 -0.477 -1.287 N1 YBC 11 YBC C2 C11 C 0 1 N N R N N N 38.073 -21.997 -11.690 -0.347 -3.108 -1.111 C2 YBC 12 YBC C3 C12 C 0 1 N N N N N N 38.230 -21.113 -10.490 -0.927 -1.872 -1.801 C3 YBC 13 YBC O3 O1 O 0 1 N N N N N N 39.652 -20.972 -10.042 0.064 -1.293 -2.652 O3 YBC 14 YBC C4 C13 C 0 1 N N R N N N 37.146 -24.392 -12.791 -0.833 -2.465 1.660 C4 YBC 15 YBC O4 O2 O 0 1 N N N N N N 28.838 -24.779 -12.199 -3.557 4.540 2.062 O4 YBC 16 YBC CL1 CL1 CL 0 0 N N N N N N 44.870 -23.744 -9.802 5.178 2.190 -1.926 CL1 YBC 17 YBC CL CL2 CL 0 0 N N N N N N 43.706 -21.060 -11.056 6.102 1.649 1.002 CL YBC 18 YBC S S1 S 0 1 N N N N N N 39.792 -23.956 -13.445 1.659 -1.352 1.860 S YBC 19 YBC C C14 C 0 1 N N R N N N 38.547 -24.269 -12.174 0.251 -1.800 0.807 C YBC 20 YBC O2 O3 O 0 1 N N N N N N 37.149 -25.310 -13.866 -0.288 -3.613 2.314 O2 YBC 21 YBC C1 C15 C 0 1 N N R N N N 36.642 -22.043 -12.182 -1.455 -3.827 -0.336 C1 YBC 22 YBC O1 O4 O 0 1 N N N N N N 35.763 -22.390 -11.110 -2.514 -4.175 -1.230 O1 YBC 23 YBC O O5 O 0 1 N N N N N N 38.471 -23.289 -11.154 0.684 -2.710 -0.206 O YBC 24 YBC N N2 N 0 1 Y N N N N N 35.259 -23.123 -13.825 -2.593 -1.711 0.135 N YBC 25 YBC N2 N3 N 0 1 Y N N N N N 35.114 -22.747 -15.135 -3.112 -1.659 -1.041 N2 YBC 26 YBC C7 C16 C 0 1 Y N N N N N 33.200 -23.494 -14.401 -3.324 0.303 -0.216 C7 YBC 27 YBC C16 C17 C 0 1 Y N N N N N 30.830 -23.011 -15.095 -4.284 2.446 -1.035 C16 YBC 28 YBC S1 S2 S 0 1 Y N N N N N 29.129 -23.289 -14.569 -4.507 4.092 -0.447 S1 YBC 29 YBC N3 N4 N 0 1 Y N N N N N 31.182 -24.315 -13.086 -3.399 2.438 1.027 N3 YBC 30 YBC H13 H1 H 0 1 N N N N N N 41.394 -21.714 -12.703 4.161 -0.001 2.274 H13 YBC 31 YBC H11 H2 H 0 1 N N N N N N 41.127 -25.931 -12.042 1.311 -0.529 -0.871 H11 YBC 32 YBC H10 H3 H 0 1 N N N N N N 43.250 -25.937 -10.663 2.696 0.862 -2.355 H10 YBC 33 YBC H6 H4 H 0 1 N N N N N N 33.896 -23.963 -12.334 -2.360 -0.196 1.687 H6 YBC 34 YBC H5 H5 H 0 1 N N N N N N 37.336 -22.680 -14.092 -2.743 -3.418 1.345 H5 YBC 35 YBC H2 H6 H 0 1 N N N N N N 38.746 -21.676 -12.498 0.067 -3.782 -1.861 H2 YBC 36 YBC H31 H7 H 0 1 N N N N N N 37.841 -20.114 -10.738 -1.793 -2.161 -2.397 H31 YBC 37 YBC H32 H8 H 0 1 N N N N N N 37.644 -21.539 -9.663 -1.230 -1.144 -1.049 H32 YBC 38 YBC HO3 H9 H 0 1 N N N N N N 39.690 -20.404 -9.282 -0.234 -0.503 -3.123 HO3 YBC 39 YBC H4 H10 H 0 1 N N N N N N 36.454 -24.735 -12.008 -1.196 -1.759 2.406 H4 YBC 40 YBC HO4 H11 H 0 1 N N N N N N 27.955 -24.481 -12.382 -2.715 5.014 2.021 HO4 YBC 41 YBC H H12 H 0 1 N N N N N N 38.816 -25.242 -11.736 -0.154 -0.902 0.341 H YBC 42 YBC HO2 H13 H 0 1 N N N N N N 36.275 -25.371 -14.233 0.452 -3.415 2.905 HO2 YBC 43 YBC H1 H14 H 0 1 N N N N N N 36.373 -21.055 -12.583 -1.053 -4.730 0.123 H1 YBC 44 YBC HO1 H15 H 0 1 N N N N N N 35.800 -21.718 -10.439 -2.246 -4.766 -1.947 HO1 YBC 45 YBC H16 H16 H 0 1 N N N N N N 31.132 -22.394 -15.929 -4.591 2.069 -1.999 H16 YBC 46 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YBC CL1 C9 SING N N 1 YBC C9 C10 SING Y N 2 YBC C9 C8 DOUB Y N 3 YBC C10 C11 DOUB Y N 4 YBC C11 C12 SING Y N 5 YBC C12 C13 DOUB Y N 6 YBC C12 S SING N N 7 YBC C13 C8 SING Y N 8 YBC C8 CL SING N N 9 YBC S C SING N N 10 YBC C C4 SING N N 11 YBC C O SING N N 12 YBC C4 O2 SING N N 13 YBC C4 C5 SING N N 14 YBC C5 C1 SING N N 15 YBC C5 N SING N N 16 YBC C1 O1 SING N N 17 YBC C1 C2 SING N N 18 YBC C2 C3 SING N N 19 YBC C2 O SING N N 20 YBC C3 O3 SING N N 21 YBC N N2 SING Y N 22 YBC N C6 SING Y N 23 YBC N2 N1 DOUB Y N 24 YBC N1 C7 SING Y N 25 YBC C7 C6 DOUB Y N 26 YBC C7 C14 SING N N 27 YBC C14 C16 DOUB Y N 28 YBC C14 N3 SING Y N 29 YBC C16 S1 SING Y N 30 YBC S1 C15 SING Y N 31 YBC C15 N3 DOUB Y N 32 YBC C15 O4 SING N N 33 YBC C13 H13 SING N N 34 YBC C11 H11 SING N N 35 YBC C10 H10 SING N N 36 YBC C6 H6 SING N N 37 YBC C5 H5 SING N N 38 YBC C2 H2 SING N N 39 YBC C3 H31 SING N N 40 YBC C3 H32 SING N N 41 YBC O3 HO3 SING N N 42 YBC C4 H4 SING N N 43 YBC O4 HO4 SING N N 44 YBC C H SING N N 45 YBC O2 HO2 SING N N 46 YBC C1 H1 SING N N 47 YBC O1 HO1 SING N N 48 YBC C16 H16 SING N N 49 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YBC InChI InChI 1.06 "InChI=1S/C17H16Cl2N4O5S2/c18-8-2-1-7(3-9(8)19)30-16-15(26)13(14(25)12(5-24)28-16)23-4-10(21-22-23)11-6-29-17(27)20-11/h1-4,6,12-16,24-26H,5H2,(H,20,27)/t12-,13+,14+,15-,16-/m1/s1" YBC InChIKey InChI 1.06 BWEZCWXAMQJAHD-LYYZXLFJSA-N YBC SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1O[C@H](Sc2ccc(Cl)c(Cl)c2)[C@H](O)[C@H]([C@H]1O)n3cc(nn3)c4csc(O)n4" YBC SMILES CACTVS 3.385 "OC[CH]1O[CH](Sc2ccc(Cl)c(Cl)c2)[CH](O)[CH]([CH]1O)n3cc(nn3)c4csc(O)n4" YBC SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1S[C@@H]2[C@@H]([C@H]([C@H]([C@H](O2)CO)O)n3cc(nn3)c4csc(n4)O)O)Cl)Cl" YBC SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1SC2C(C(C(C(O2)CO)O)n3cc(nn3)c4csc(n4)O)O)Cl)Cl" # _pdbx_chem_comp_identifier.comp_id YBC _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},3~{R},4~{S},5~{R},6~{R})-2-(3,4-dichlorophenyl)sulfanyl-6-(hydroxymethyl)-4-[4-(2-oxidanyl-1,3-thiazol-4-yl)-1,2,3-triazol-1-yl]oxane-3,5-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YBC "Create component" 2023-11-30 PDBE YBC "Initial release" 2024-06-05 RCSB #