data_YBJ # _chem_comp.id YBJ _chem_comp.name "(2~{S},4~{S},5~{R},6~{S})-4-azanyl-5-methoxy-6-methyl-oxan-2-ol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C7 H15 N O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms L-actinosamine _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-02-16 _chem_comp.pdbx_modified_date 2022-12-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 161.199 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YBJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7LKC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YBJ C1 C1 C 0 1 N N R 12.793 16.387 3.207 2.096 0.266 0.319 C1 YBJ 1 YBJ C2 C2 C 0 1 N N N 11.811 15.328 3.694 1.127 1.406 0.643 C2 YBJ 2 YBJ C3 C3 C 0 1 N N S 10.537 15.983 4.192 -0.162 1.215 -0.163 C3 YBJ 3 YBJ C4 C4 C 0 1 N N R 9.969 16.936 3.152 -0.753 -0.161 0.160 C4 YBJ 4 YBJ C5 C5 C 0 1 N N S 11.033 17.942 2.736 0.288 -1.240 -0.146 C5 YBJ 5 YBJ N N1 N 0 1 N N N 9.521 14.948 4.482 -1.127 2.262 0.198 N YBJ 6 YBJ C C6 C 0 1 N N N 10.551 18.857 1.623 -0.274 -2.613 0.230 C YBJ 7 YBJ O O1 O 0 1 N N N 12.182 17.248 2.245 1.472 -0.986 0.613 O YBJ 8 YBJ C6 C7 C 0 1 N N N 7.687 17.535 2.893 -3.147 -0.111 0.035 C6 YBJ 9 YBJ O2 O2 O 0 1 N N N 8.848 17.601 3.724 -1.917 -0.380 -0.641 O2 YBJ 10 YBJ H9 H1 H 0 1 N N N 13.632 15.862 2.726 2.998 0.373 0.922 H9 YBJ 11 YBJ H8 H3 H 0 1 N N N 11.569 14.648 2.864 0.895 1.395 1.708 H8 YBJ 12 YBJ H7 H4 H 0 1 N N N 12.270 14.757 4.514 1.584 2.359 0.379 H7 YBJ 13 YBJ H2 H5 H 0 1 N N N 10.759 16.547 5.110 0.062 1.277 -1.228 H2 YBJ 14 YBJ H1 H6 H 0 1 N N N 9.660 16.358 2.269 -1.024 -0.203 1.215 H1 YBJ 15 YBJ H H7 H 0 1 N N N 11.304 18.554 3.609 0.527 -1.224 -1.209 H YBJ 16 YBJ H10 H8 H 0 1 N N N 9.879 14.311 5.165 -0.721 3.180 0.092 H10 YBJ 17 YBJ H11 H9 H 0 1 N N N 8.692 15.384 4.834 -1.974 2.175 -0.344 H11 YBJ 18 YBJ H4 H11 H 0 1 N N N 9.664 19.412 1.962 -1.124 -2.845 -0.411 H4 YBJ 19 YBJ H6 H12 H 0 1 N N N 11.349 19.567 1.361 0.499 -3.370 0.097 H6 YBJ 20 YBJ H5 H13 H 0 1 N N N 10.291 18.255 0.740 -0.596 -2.601 1.271 H5 YBJ 21 YBJ H13 H14 H 0 1 N N N 6.855 18.063 3.382 -3.276 -0.821 0.852 H13 YBJ 22 YBJ H12 H15 H 0 1 N N N 7.902 18.009 1.924 -3.127 0.903 0.436 H12 YBJ 23 YBJ H14 H16 H 0 1 N N N 7.410 16.483 2.733 -3.976 -0.208 -0.666 H14 YBJ 24 YBJ O1 O3 O 0 1 N Y N 13.255 17.067 4.314 2.441 0.313 -1.067 O1 YBJ 25 YBJ H3 H17 H 0 1 N Y N 13.651 16.453 4.921 3.053 -0.382 -1.344 H3 YBJ 26 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YBJ C C5 SING N N 1 YBJ O C5 SING N N 2 YBJ O C1 SING N N 3 YBJ C5 C4 SING N N 4 YBJ C6 O2 SING N N 5 YBJ C4 O2 SING N N 6 YBJ C4 C3 SING N N 7 YBJ C1 C2 SING N N 8 YBJ C2 C3 SING N N 9 YBJ C3 N SING N N 10 YBJ C1 H9 SING N N 11 YBJ C2 H8 SING N N 12 YBJ C2 H7 SING N N 13 YBJ C3 H2 SING N N 14 YBJ C4 H1 SING N N 15 YBJ C5 H SING N N 16 YBJ N H10 SING N N 17 YBJ N H11 SING N N 18 YBJ C H4 SING N N 19 YBJ C H6 SING N N 20 YBJ C H5 SING N N 21 YBJ C6 H13 SING N N 22 YBJ C6 H12 SING N N 23 YBJ C6 H14 SING N N 24 YBJ C1 O1 SING N N 25 YBJ O1 H3 SING N N 26 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YBJ InChI InChI 1.03 "InChI=1S/C7H15NO3/c1-4-7(10-2)5(8)3-6(9)11-4/h4-7,9H,3,8H2,1-2H3/t4-,5-,6?,7-/m0/s1" YBJ InChIKey InChI 1.03 ZECQVPSAXSIXIC-KQXJUZEQSA-N YBJ SMILES_CANONICAL CACTVS 3.385 "CO[C@@H]1[C@@H](N)C[C@H](O)O[C@H]1C" YBJ SMILES CACTVS 3.385 "CO[CH]1[CH](N)C[CH](O)O[CH]1C" YBJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1[C@@H]([C@H](C[C@H](O1)O)N)OC" YBJ SMILES "OpenEye OEToolkits" 2.0.7 "CC1C(C(CC(O1)O)N)OC" # _pdbx_chem_comp_identifier.comp_id YBJ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S},4~{S},5~{R},6~{S})-4-azanyl-5-methoxy-6-methyl-oxan-2-ol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YBJ "Create component" 2021-02-16 RCSB YBJ "Modify synonyms" 2022-11-28 RCSB YBJ "Initial release" 2022-12-07 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id YBJ _pdbx_chem_comp_synonyms.name L-actinosamine _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? #