data_YBK # _chem_comp.id YBK _chem_comp.name "8-methoxy-3-methyl-N-{(2S)-3,3,3-trifluoro-2-[5-fluoro-6-(4-fluorophenyl)-4-(2-hydroxypropan-2-yl)pyridin-2-yl]-2-hydroxypropyl}cinnoline-6-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H25 F5 N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-01-23 _chem_comp.pdbx_modified_date 2023-10-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 576.515 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YBK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8FU3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YBK C10 C1 C 0 1 N N N 134.654 131.825 101.342 9.509 2.949 -0.000 C10 YBK 1 YBK N12 N1 N 0 1 Y N N 133.492 128.224 101.030 7.891 -0.328 -0.173 N12 YBK 2 YBK C13 C2 C 0 1 Y N N 133.820 127.893 99.722 6.580 -0.076 -0.160 C13 YBK 3 YBK C17 C3 C 0 1 N N N 136.107 127.402 93.505 0.078 0.090 -0.149 C17 YBK 4 YBK C20 C4 C 0 1 Y N N 137.712 126.768 91.723 -2.185 -0.923 -0.201 C20 YBK 5 YBK C21 C5 C 0 1 Y N N 139.032 126.820 91.264 -3.092 -1.965 -0.257 C21 YBK 6 YBK C22 C6 C 0 1 Y N N 139.284 127.028 89.862 -4.451 -1.688 -0.242 C22 YBK 7 YBK C28 C7 C 0 1 Y N N 135.443 126.432 87.722 -3.544 2.970 0.697 C28 YBK 8 YBK C01 C8 C 0 1 N N N 132.722 124.294 99.565 5.013 -3.408 -0.334 C01 YBK 9 YBK O02 O1 O 0 1 N N N 132.925 125.613 100.024 6.033 -2.409 -0.282 O02 YBK 10 YBK C03 C9 C 0 1 Y N N 133.533 126.577 99.190 5.627 -1.115 -0.214 C03 YBK 11 YBK C04 C10 C 0 1 Y N N 133.871 126.309 97.841 4.296 -0.817 -0.198 C04 YBK 12 YBK C05 C11 C 0 1 Y N N 134.463 127.295 97.062 3.855 0.515 -0.128 C05 YBK 13 YBK C06 C12 C 0 1 Y N N 134.741 128.570 97.571 4.768 1.557 -0.073 C06 YBK 14 YBK C07 C13 C 0 1 Y N N 134.401 128.860 98.921 6.139 1.271 -0.089 C07 YBK 15 YBK C08 C14 C 0 1 Y N N 134.677 130.170 99.436 7.114 2.286 -0.035 C08 YBK 16 YBK C09 C15 C 0 1 Y N N 134.351 130.442 100.780 8.426 1.903 -0.056 C09 YBK 17 YBK N11 N2 N 0 1 Y N N 133.788 129.490 101.536 8.756 0.620 -0.123 N11 YBK 18 YBK C14 C16 C 0 1 N N N 134.805 126.996 95.600 2.406 0.808 -0.112 C14 YBK 19 YBK O15 O2 O 0 1 N N N 134.228 126.111 95.069 2.019 1.959 -0.050 O15 YBK 20 YBK N16 N3 N 0 1 N N N 135.854 127.738 94.903 1.514 -0.201 -0.165 N16 YBK 21 YBK C18 C17 C 0 1 N N S 137.369 126.564 93.233 -0.708 -1.221 -0.218 C18 YBK 22 YBK O19 O3 O 0 1 N N N 138.386 127.069 94.017 -0.376 -1.913 -1.424 O19 YBK 23 YBK C23 C18 C 0 1 Y N N 138.174 127.177 89.029 -4.854 -0.363 -0.171 C23 YBK 24 YBK C25 C19 C 0 1 Y N N 136.873 127.105 89.569 -3.884 0.638 -0.118 C25 YBK 25 YBK N26 N4 N 0 1 Y N N 136.705 126.913 90.879 -2.594 0.328 -0.140 N26 YBK 26 YBK C27 C20 C 0 1 Y N N 135.709 127.250 88.814 -4.297 2.061 -0.043 C27 YBK 27 YBK C29 C21 C 0 1 Y N N 134.267 126.595 86.990 -3.935 4.291 0.769 C29 YBK 28 YBK C30 C22 C 0 1 Y N N 133.378 127.611 87.346 -5.076 4.714 0.106 C30 YBK 29 YBK C32 C23 C 0 1 Y N N 133.636 128.434 88.432 -5.828 3.814 -0.632 C32 YBK 30 YBK C33 C24 C 0 1 Y N N 134.804 128.276 89.166 -5.441 2.492 -0.713 C33 YBK 31 YBK C34 C25 C 0 1 N N N 140.738 127.093 89.292 -5.466 -2.800 -0.301 C34 YBK 32 YBK C35 C26 C 0 1 N N N 141.682 126.281 90.184 -6.342 -2.758 0.953 C35 YBK 33 YBK C36 C27 C 0 1 N N N 141.145 128.568 89.171 -6.343 -2.625 -1.542 C36 YBK 34 YBK O37 O4 O 0 1 N N N 140.789 126.531 88.015 -4.790 -4.058 -0.368 O37 YBK 35 YBK C38 C28 C 0 1 N N N 137.162 125.087 93.503 -0.351 -2.095 0.986 C38 YBK 36 YBK F24 F1 F 0 1 N N N 138.365 127.385 87.701 -6.168 -0.047 -0.150 F24 YBK 37 YBK F31 F2 F 0 1 N N N 132.239 127.783 86.655 -5.456 6.009 0.179 F31 YBK 38 YBK F39 F3 F 0 1 N N N 136.891 124.864 94.809 -1.070 -3.293 0.923 F39 YBK 39 YBK F40 F4 F 0 1 N N N 138.294 124.426 93.209 1.020 -2.372 0.971 F40 YBK 40 YBK F41 F5 F 0 1 N N N 136.155 124.610 92.746 -0.677 -1.418 2.166 F41 YBK 41 YBK H1 H1 H 0 1 N N N 134.342 131.869 102.396 9.771 3.147 1.039 H1 YBK 42 YBK H2 H2 H 0 1 N N N 135.734 132.021 101.270 10.389 2.590 -0.534 H2 YBK 43 YBK H3 H3 H 0 1 N N N 134.105 132.584 100.765 9.151 3.867 -0.466 H3 YBK 44 YBK H4 H4 H 0 1 N N N 136.200 128.343 92.944 -0.176 0.617 0.771 H4 YBK 45 YBK H5 H5 H 0 1 N N N 135.240 126.837 93.132 -0.177 0.712 -1.007 H5 YBK 46 YBK H6 H6 H 0 1 N N N 139.854 126.705 91.955 -2.745 -2.987 -0.311 H6 YBK 47 YBK H7 H7 H 0 1 N N N 136.150 125.667 87.439 -2.657 2.639 1.218 H7 YBK 48 YBK H8 H8 H 0 1 N N N 132.239 123.701 100.355 4.394 -3.342 0.560 H8 YBK 49 YBK H9 H9 H 0 1 N N N 132.078 124.311 98.674 4.393 -3.249 -1.217 H9 YBK 50 YBK H10 H10 H 0 1 N N N 133.691 123.842 99.308 5.472 -4.395 -0.386 H10 YBK 51 YBK H11 H11 H 0 1 N N N 133.668 125.337 97.417 3.571 -1.616 -0.240 H11 YBK 52 YBK H12 H12 H 0 1 N N N 135.206 129.320 96.949 4.425 2.579 -0.019 H12 YBK 53 YBK H13 H13 H 0 1 N N N 135.123 130.929 98.810 6.835 3.328 0.021 H13 YBK 54 YBK H14 H14 H 0 1 N N N 136.380 128.451 95.367 1.822 -1.119 -0.214 H14 YBK 55 YBK H15 H15 H 0 1 N N N 138.172 126.942 94.934 -0.576 -1.417 -2.229 H15 YBK 56 YBK H16 H16 H 0 1 N N N 134.047 125.943 86.158 -3.352 4.995 1.343 H16 YBK 57 YBK H17 H17 H 0 1 N N N 132.926 129.200 88.708 -6.717 4.148 -1.146 H17 YBK 58 YBK H18 H18 H 0 1 N N N 135.018 128.931 89.998 -6.028 1.791 -1.288 H18 YBK 59 YBK H19 H19 H 0 1 N N N 141.670 126.694 91.203 -6.857 -1.799 1.004 H19 YBK 60 YBK H20 H20 H 0 1 N N N 141.351 125.232 90.210 -7.076 -3.563 0.910 H20 YBK 61 YBK H21 H21 H 0 1 N N N 142.704 126.333 89.779 -5.718 -2.883 1.837 H21 YBK 62 YBK H22 H22 H 0 1 N N N 141.115 129.040 90.164 -5.718 -2.655 -2.435 H22 YBK 63 YBK H23 H23 H 0 1 N N N 142.165 128.635 88.765 -7.076 -3.430 -1.585 H23 YBK 64 YBK H24 H24 H 0 1 N N N 140.447 129.087 88.497 -6.858 -1.666 -1.491 H24 YBK 65 YBK H25 H25 H 0 1 N N N 140.541 125.615 88.061 -4.215 -4.236 0.389 H25 YBK 66 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YBK F31 C30 SING N N 1 YBK C29 C30 DOUB Y N 2 YBK C29 C28 SING Y N 3 YBK C30 C32 SING Y N 4 YBK F24 C23 SING N N 5 YBK C28 C27 DOUB Y N 6 YBK O37 C34 SING N N 7 YBK C32 C33 DOUB Y N 8 YBK C27 C33 SING Y N 9 YBK C27 C25 SING N N 10 YBK C23 C25 DOUB Y N 11 YBK C23 C22 SING Y N 12 YBK C36 C34 SING N N 13 YBK C34 C22 SING N N 14 YBK C34 C35 SING N N 15 YBK C25 N26 SING Y N 16 YBK C22 C21 DOUB Y N 17 YBK N26 C20 DOUB Y N 18 YBK C21 C20 SING Y N 19 YBK C20 C18 SING N N 20 YBK F41 C38 SING N N 21 YBK F40 C38 SING N N 22 YBK C18 C38 SING N N 23 YBK C18 C17 SING N N 24 YBK C18 O19 SING N N 25 YBK C38 F39 SING N N 26 YBK C17 N16 SING N N 27 YBK N16 C14 SING N N 28 YBK O15 C14 DOUB N N 29 YBK C14 C05 SING N N 30 YBK C05 C06 DOUB Y N 31 YBK C05 C04 SING Y N 32 YBK C06 C07 SING Y N 33 YBK C04 C03 DOUB Y N 34 YBK C07 C08 DOUB Y N 35 YBK C07 C13 SING Y N 36 YBK C03 C13 SING Y N 37 YBK C03 O02 SING N N 38 YBK C08 C09 SING Y N 39 YBK C01 O02 SING N N 40 YBK C13 N12 DOUB Y N 41 YBK C09 C10 SING N N 42 YBK C09 N11 DOUB Y N 43 YBK N12 N11 SING Y N 44 YBK C10 H1 SING N N 45 YBK C10 H2 SING N N 46 YBK C10 H3 SING N N 47 YBK C17 H4 SING N N 48 YBK C17 H5 SING N N 49 YBK C21 H6 SING N N 50 YBK C28 H7 SING N N 51 YBK C01 H8 SING N N 52 YBK C01 H9 SING N N 53 YBK C01 H10 SING N N 54 YBK C04 H11 SING N N 55 YBK C06 H12 SING N N 56 YBK C08 H13 SING N N 57 YBK N16 H14 SING N N 58 YBK O19 H15 SING N N 59 YBK C29 H16 SING N N 60 YBK C32 H17 SING N N 61 YBK C33 H18 SING N N 62 YBK C35 H19 SING N N 63 YBK C35 H20 SING N N 64 YBK C35 H21 SING N N 65 YBK C36 H22 SING N N 66 YBK C36 H23 SING N N 67 YBK C36 H24 SING N N 68 YBK O37 H25 SING N N 69 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YBK SMILES ACDLabs 12.01 "CC(C)(O)c1cc(nc(c2ccc(F)cc2)c1F)C(O)(CNC(=O)c1cc2cc(C)nnc2c(c1)OC)C(F)(F)F" YBK InChI InChI 1.06 "InChI=1S/C28H25F5N4O4/c1-14-9-16-10-17(11-20(41-4)23(16)37-36-14)25(38)34-13-27(40,28(31,32)33)21-12-19(26(2,3)39)22(30)24(35-21)15-5-7-18(29)8-6-15/h5-12,39-40H,13H2,1-4H3,(H,34,38)/t27-/m0/s1" YBK InChIKey InChI 1.06 XMOSIGSMKGYOBC-MHZLTWQESA-N YBK SMILES_CANONICAL CACTVS 3.385 "COc1cc(cc2cc(C)nnc12)C(=O)NC[C@](O)(c3cc(c(F)c(n3)c4ccc(F)cc4)C(C)(C)O)C(F)(F)F" YBK SMILES CACTVS 3.385 "COc1cc(cc2cc(C)nnc12)C(=O)NC[C](O)(c3cc(c(F)c(n3)c4ccc(F)cc4)C(C)(C)O)C(F)(F)F" YBK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc2cc(cc(c2nn1)OC)C(=O)NC[C@](c3cc(c(c(n3)c4ccc(cc4)F)F)C(C)(C)O)(C(F)(F)F)O" YBK SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cc2cc(cc(c2nn1)OC)C(=O)NCC(c3cc(c(c(n3)c4ccc(cc4)F)F)C(C)(C)O)(C(F)(F)F)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YBK "SYSTEMATIC NAME" ACDLabs 12.01 "8-methoxy-3-methyl-N-{(2S)-3,3,3-trifluoro-2-[5-fluoro-6-(4-fluorophenyl)-4-(2-hydroxypropan-2-yl)pyridin-2-yl]-2-hydroxypropyl}cinnoline-6-carboxamide" YBK "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "8-methoxy-3-methyl-~{N}-[(2~{S})-3,3,3-tris(fluoranyl)-2-[5-fluoranyl-6-(4-fluorophenyl)-4-(2-oxidanylpropan-2-yl)pyridin-2-yl]-2-oxidanyl-propyl]cinnoline-6-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YBK "Create component" 2023-01-23 RCSB YBK "Initial release" 2023-11-01 RCSB #