data_YBL # _chem_comp.id YBL _chem_comp.name "3-[(Z)-1-{[(2S)-butan-2-yl]oxy}-2-(2,4-dichlorophenyl)ethenyl]pyridine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H17 Cl2 N O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-12 _chem_comp.pdbx_modified_date 2024-12-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 322.229 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YBL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7G7R _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YBL C11 C1 C 0 1 Y N N N N N -12.465 3.103 44.674 -2.146 1.340 -0.209 C11 YBL 1 YBL C13 C2 C 0 1 N N N N N N -11.258 8.842 42.989 1.584 -3.396 -0.755 C13 YBL 2 YBL C15 C3 C 0 1 Y N N N N N -15.097 9.274 48.141 5.243 1.481 0.493 C15 YBL 3 YBL C16 C4 C 0 1 Y N N N N N -11.940 2.101 43.832 -3.453 0.903 -0.144 C16 YBL 4 YBL C18 C5 C 0 1 Y N N N N N -10.584 3.869 42.766 -2.738 -1.115 0.947 C18 YBL 5 YBL C19 C6 C 0 1 N N N N N N -10.848 10.173 43.557 2.737 -3.623 0.224 C19 YBL 6 YBL C20 C7 C 0 1 Y N N N N N -11.015 2.537 42.886 -3.750 -0.321 0.432 C20 YBL 7 YBL C1 C8 C 0 1 N N N N N N -12.722 6.774 45.531 1.284 0.101 0.232 C1 YBL 8 YBL C2 C9 C 0 1 Y N N N N N -13.519 7.666 46.448 2.685 0.559 0.324 C2 YBL 9 YBL C3 C10 C 0 1 N N N N N N -12.791 5.416 45.488 0.279 0.999 0.238 C3 YBL 10 YBL O4 O1 O 0 1 N N N N N N -11.866 7.435 44.700 1.008 -1.226 0.140 O4 YBL 11 YBL C5 C11 C 0 1 Y N N N N N -12.958 8.872 47.003 3.735 -0.366 0.379 C5 YBL 12 YBL C6 C12 C 0 1 Y N N N N N -14.873 7.332 46.766 2.985 1.922 0.364 C6 YBL 13 YBL C7 C13 C 0 1 Y N N N N N -12.103 4.468 44.593 -1.119 0.540 0.303 C7 YBL 14 YBL C8 C14 C 0 1 N N R N N N -12.464 8.336 43.771 1.446 -1.899 -1.042 C8 YBL 15 YBL C9 C15 C 0 1 Y N N N N N -13.746 9.696 47.868 5.029 0.115 0.464 C9 YBL 16 YBL N10 N1 N 0 1 Y N N N N N -15.684 8.116 47.608 4.234 2.330 0.446 N10 YBL 17 YBL C12 C16 C 0 1 Y N N N N N -11.148 4.838 43.629 -1.426 -0.697 0.877 C12 YBL 18 YBL C14 C17 C 0 1 N N N N N N -13.431 7.667 42.747 0.422 -1.686 -2.159 C14 YBL 19 YBL CL17 CL1 CL 0 0 N N N N N N -13.593 2.592 45.872 -1.776 2.875 -0.931 CL17 YBL 20 YBL CL21 CL2 CL 0 0 N N N N N N -10.445 1.372 41.707 -5.397 -0.862 0.510 CL21 YBL 21 YBL H28 H1 H 0 1 N N N N N N -10.428 8.127 43.083 1.786 -3.927 -1.685 H28 YBL 22 YBL H29 H2 H 0 1 N N N N N N -11.525 8.957 41.928 0.657 -3.769 -0.317 H29 YBL 23 YBL H33 H3 H 0 1 N N N N N N -15.696 9.888 48.798 6.253 1.860 0.560 H33 YBL 24 YBL H34 H4 H 0 1 N N N N N N -12.235 1.065 43.915 -4.247 1.517 -0.543 H34 YBL 25 YBL H35 H5 H 0 1 N N N N N N -9.841 4.146 42.033 -2.976 -2.068 1.395 H35 YBL 26 YBL H37 H6 H 0 1 N N N N N N -9.977 10.555 43.005 3.678 -3.353 -0.255 H37 YBL 27 YBL H36 H7 H 0 1 N N N N N N -11.682 10.884 43.464 2.590 -3.005 1.110 H36 YBL 28 YBL H38 H8 H 0 1 N N N N N N -10.585 10.053 44.618 2.766 -4.673 0.515 H38 YBL 29 YBL H22 H9 H 0 1 N N N N N N -13.447 4.966 46.218 0.499 2.056 0.195 H22 YBL 30 YBL H23 H10 H 0 1 N N N N N N -11.943 9.154 46.766 3.539 -1.428 0.350 H23 YBL 31 YBL H24 H11 H 0 1 N N N N N N -15.294 6.434 46.339 2.186 2.648 0.323 H24 YBL 32 YBL H25 H12 H 0 1 N N N N N N -12.972 9.171 44.277 2.411 -1.498 -1.352 H25 YBL 33 YBL H26 H13 H 0 1 N N N N N N -13.343 10.600 48.300 5.864 -0.569 0.508 H26 YBL 34 YBL H27 H14 H 0 1 N N N N N N -10.843 5.871 43.547 -0.638 -1.320 1.275 H27 YBL 35 YBL H30 H15 H 0 1 N N N N N N -13.842 8.434 42.075 0.712 -2.268 -3.033 H30 YBL 36 YBL H31 H16 H 0 1 N N N N N N -12.880 6.920 42.157 -0.561 -2.010 -1.817 H31 YBL 37 YBL H32 H17 H 0 1 N N N N N N -14.253 7.174 43.287 0.386 -0.629 -2.421 H32 YBL 38 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YBL C1 C2 SING N N 1 YBL C1 C3 DOUB N Z 2 YBL C1 O4 SING N N 3 YBL C2 C5 DOUB Y N 4 YBL C2 C6 SING Y N 5 YBL C3 C7 SING N N 6 YBL O4 C8 SING N N 7 YBL C5 C9 SING Y N 8 YBL C6 N10 DOUB Y N 9 YBL C7 C11 DOUB Y N 10 YBL C7 C12 SING Y N 11 YBL C8 C13 SING N N 12 YBL C8 C14 SING N N 13 YBL C9 C15 DOUB Y N 14 YBL N10 C15 SING Y N 15 YBL C11 C16 SING Y N 16 YBL C11 CL17 SING N N 17 YBL C12 C18 DOUB Y N 18 YBL C13 C19 SING N N 19 YBL C16 C20 DOUB Y N 20 YBL C18 C20 SING Y N 21 YBL C20 CL21 SING N N 22 YBL C13 H28 SING N N 23 YBL C13 H29 SING N N 24 YBL C15 H33 SING N N 25 YBL C16 H34 SING N N 26 YBL C18 H35 SING N N 27 YBL C19 H37 SING N N 28 YBL C19 H36 SING N N 29 YBL C19 H38 SING N N 30 YBL C3 H22 SING N N 31 YBL C5 H23 SING N N 32 YBL C6 H24 SING N N 33 YBL C8 H25 SING N N 34 YBL C9 H26 SING N N 35 YBL C12 H27 SING N N 36 YBL C14 H30 SING N N 37 YBL C14 H31 SING N N 38 YBL C14 H32 SING N N 39 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YBL SMILES ACDLabs 12.01 "Clc1ccc(/C=C(\OC(C)CC)c2cccnc2)c(Cl)c1" YBL InChI InChI 1.06 "InChI=1S/C17H17Cl2NO/c1-3-12(2)21-17(14-5-4-8-20-11-14)9-13-6-7-15(18)10-16(13)19/h4-12H,3H2,1-2H3/t12-/m0/s1" YBL InChIKey InChI 1.06 GDYZZBINQYUQBF-LBPRGKRZSA-N YBL SMILES_CANONICAL CACTVS 3.385 "CC[C@@H](C)OC(=C\c1ccc(Cl)cc1Cl)/c2cccnc2" YBL SMILES CACTVS 3.385 "CC[CH](C)OC(=Cc1ccc(Cl)cc1Cl)c2cccnc2" YBL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC[C@@H](C)O/C(=C\c1ccc(cc1Cl)Cl)/c2cccnc2" YBL SMILES "OpenEye OEToolkits" 2.0.7 "CCC(C)OC(=Cc1ccc(cc1Cl)Cl)c2cccnc2" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YBL "SYSTEMATIC NAME" ACDLabs 12.01 "3-[(Z)-1-{[(2S)-butan-2-yl]oxy}-2-(2,4-dichlorophenyl)ethenyl]pyridine" YBL "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-[(~{Z})-1-[(2~{R})-butan-2-yl]oxy-2-(2,4-dichlorophenyl)ethenyl]pyridine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YBL "Create component" 2023-06-12 RCSB YBL "Initial release" 2024-12-18 RCSB #