data_YBU # _chem_comp.id YBU _chem_comp.name "(5-phenyl-1,3,4-oxadiazol-2-yl)methanimine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H7 N3 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-13 _chem_comp.pdbx_modified_date 2023-06-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 173.171 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YBU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PDH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YBU C1 C1 C 0 1 N N N -32.619 10.565 4.313 3.618 -0.835 -0.001 C1 YBU 1 YBU C2 C2 C 0 1 Y N N -33.906 10.064 4.764 2.311 -0.164 0.000 C2 YBU 2 YBU N1 N1 N 0 1 Y N N -34.196 9.611 5.943 2.104 1.135 0.002 N1 YBU 3 YBU N2 N2 N 0 1 Y N N -35.551 9.267 5.921 0.837 1.364 0.002 N2 YBU 4 YBU C3 C3 C 0 1 Y N N -35.988 9.561 4.730 0.186 0.219 0.000 C3 YBU 5 YBU C4 C4 C 0 1 Y N N -37.325 9.400 4.160 -1.281 0.048 -0.000 C4 YBU 6 YBU C5 C5 C 0 1 Y N N -37.494 9.303 2.775 -1.837 -1.233 0.003 C5 YBU 7 YBU C6 C6 C 0 1 Y N N -38.758 9.160 2.229 -3.208 -1.385 0.003 C6 YBU 8 YBU C7 C7 C 0 1 Y N N -39.850 9.084 3.045 -4.031 -0.273 -0.000 C7 YBU 9 YBU C8 C8 C 0 1 Y N N -39.691 9.184 4.417 -3.486 0.999 -0.004 C8 YBU 10 YBU C9 C9 C 0 1 Y N N -38.436 9.326 4.985 -2.117 1.166 0.002 C9 YBU 11 YBU O1 O1 O 0 1 Y N N -34.992 10.050 3.929 1.103 -0.767 -0.007 O1 YBU 12 YBU N3 N3 N 0 1 N N N -31.535 10.607 5.057 4.707 -0.133 0.001 N3 YBU 13 YBU H1 H1 H 0 1 N N N -32.547 10.927 3.298 3.671 -1.914 0.002 H1 YBU 14 YBU H2 H2 H 0 1 N N N -36.631 9.340 2.126 -1.196 -2.102 0.005 H2 YBU 15 YBU H3 H3 H 0 1 N N N -38.880 9.109 1.157 -3.640 -2.375 0.005 H3 YBU 16 YBU H4 H4 H 0 1 N N N -40.834 8.946 2.622 -5.104 -0.398 -0.000 H4 YBU 17 YBU H5 H5 H 0 1 N N N -40.561 9.151 5.056 -4.135 1.863 -0.008 H5 YBU 18 YBU H6 H6 H 0 1 N N N -38.324 9.378 6.058 -1.693 2.159 0.003 H6 YBU 19 YBU H7 H7 H 0 1 N N N -30.754 10.986 4.560 5.570 -0.576 0.001 H7 YBU 20 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YBU C6 C5 DOUB Y N 1 YBU C6 C7 SING Y N 2 YBU C5 C4 SING Y N 3 YBU C7 C8 DOUB Y N 4 YBU O1 C3 SING Y N 5 YBU O1 C2 SING Y N 6 YBU C4 C3 SING N N 7 YBU C4 C9 DOUB Y N 8 YBU C1 C2 SING N N 9 YBU C1 N3 DOUB N N 10 YBU C8 C9 SING Y N 11 YBU C3 N2 DOUB Y N 12 YBU C2 N1 DOUB Y N 13 YBU N2 N1 SING Y N 14 YBU C1 H1 SING N N 15 YBU C5 H2 SING N N 16 YBU C6 H3 SING N N 17 YBU C7 H4 SING N N 18 YBU C8 H5 SING N N 19 YBU C9 H6 SING N N 20 YBU N3 H7 SING N N 21 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YBU InChI InChI 1.06 "InChI=1S/C9H7N3O/c10-6-8-11-12-9(13-8)7-4-2-1-3-5-7/h1-6,10H/b10-6-" YBU InChIKey InChI 1.06 YVGIABMOZOZHSD-POHAHGRESA-N YBU SMILES_CANONICAL CACTVS 3.385 "N=Cc1oc(nn1)c2ccccc2" YBU SMILES CACTVS 3.385 "N=Cc1oc(nn1)c2ccccc2" YBU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C\c1nnc(o1)c2ccccc2" YBU SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)c2nnc(o2)C=N" # _pdbx_chem_comp_identifier.comp_id YBU _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(5-phenyl-1,3,4-oxadiazol-2-yl)methanimine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YBU "Create component" 2023-06-13 PDBE YBU "Initial release" 2023-06-28 RCSB #