data_YBY # _chem_comp.id YBY _chem_comp.name "N-{[(1S)-1-carboxy-2-(4-hydroxy-3-iodophenyl)ethyl]carbamoyl}-L-glutamic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H17 I N2 O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(S)-2-(3-((S)-1-carboxy-2-(4-hydroxy-3-iodophenyl)ethyl)ureido)pentanedioic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-06-05 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 480.209 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YBY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3D7F _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YBY I18 I18 I 0 1 N N N 24.576 49.559 43.654 -3.176 -1.979 0.795 I18 YBY 1 YBY C17 C17 C 0 1 Y N N 23.879 47.559 43.895 -3.034 -0.015 0.079 C17 YBY 2 YBY C16 C16 C 0 1 Y N N 22.601 47.239 43.427 -2.162 0.876 0.674 C16 YBY 3 YBY C19 C19 C 0 1 Y N N 24.643 46.549 44.511 -3.811 0.390 -0.997 C19 YBY 4 YBY O20 O20 O 0 1 N N N 25.897 46.827 45.013 -4.666 -0.487 -1.588 O20 YBY 5 YBY C21 C21 C 0 1 Y N N 24.149 45.257 44.644 -3.715 1.691 -1.468 C21 YBY 6 YBY C22 C22 C 0 1 Y N N 22.867 44.962 44.147 -2.845 2.580 -0.866 C22 YBY 7 YBY C15 C15 C 0 1 Y N N 22.097 45.947 43.562 -2.068 2.172 0.202 C15 YBY 8 YBY C14 C14 C 0 1 N N N 20.704 45.646 43.050 -1.117 3.143 0.853 C14 YBY 9 YBY C13 C13 C 0 1 N N S 19.806 44.995 44.133 0.246 3.064 0.162 C13 YBY 10 YBY C23 C23 C 0 1 N N N 20.003 45.621 45.487 1.160 4.119 0.730 C23 YBY 11 YBY O25 O25 O 0 1 N N N 19.551 46.784 45.643 2.194 3.797 1.266 O25 YBY 12 YBY O24 O24 O 0 1 N N N 20.509 44.920 46.387 0.826 5.416 0.640 O24 YBY 13 YBY N12 N12 N 0 1 N N N 18.471 45.344 43.644 0.830 1.739 0.385 N12 YBY 14 YBY C11 C11 C 0 1 N N N 17.827 44.540 42.797 1.731 1.245 -0.487 C11 YBY 15 YBY O26 O26 O 0 1 N N N 18.234 43.460 42.333 2.059 1.898 -1.459 O26 YBY 16 YBY N10 N10 N 0 1 N N N 16.580 44.950 42.441 2.269 0.026 -0.282 N10 YBY 17 YBY C6 C6 C 0 1 N N S 15.905 44.259 41.353 3.248 -0.512 -1.230 C6 YBY 18 YBY C7 C7 C 0 1 N N N 16.858 44.488 40.163 2.527 -1.181 -2.371 C7 YBY 19 YBY O9 O9 O 0 1 N N N 17.783 45.378 40.141 3.227 -1.750 -3.366 O9 YBY 20 YBY O8 O8 O 0 1 N N N 16.774 43.707 39.159 1.319 -1.207 -2.391 O8 YBY 21 YBY C5 C5 C 0 1 N N N 14.618 45.017 40.910 4.138 -1.533 -0.519 C5 YBY 22 YBY C4 C4 C 0 1 N N N 14.823 46.551 40.840 4.964 -0.828 0.559 C4 YBY 23 YBY C2 C2 C 0 1 N N N 13.694 47.331 40.169 5.840 -1.835 1.259 C2 YBY 24 YBY O1 O1 O 0 1 N N N 12.914 46.732 39.392 5.808 -2.997 0.929 O1 YBY 25 YBY O3 O3 O 0 1 N N N 13.653 48.576 40.412 6.657 -1.440 2.249 O3 YBY 26 YBY H16 H16 H 0 1 N N N 21.998 48.001 42.956 -1.554 0.561 1.509 H16 YBY 27 YBY HO20 HO20 H 0 0 N N N 26.518 46.891 44.297 -5.553 -0.491 -1.203 HO20 YBY 28 YBY H21 H21 H 0 1 N N N 24.741 44.491 45.122 -4.318 2.008 -2.306 H21 YBY 29 YBY H22 H22 H 0 1 N N N 22.482 43.956 44.224 -2.770 3.593 -1.233 H22 YBY 30 YBY H14 H14 H 0 1 N N N 20.238 46.590 42.730 -1.512 4.155 0.763 H14 YBY 31 YBY H14A H14A H 0 0 N N N 20.797 44.935 42.216 -1.004 2.890 1.908 H14A YBY 32 YBY H13 H13 H 0 1 N N N 20.007 43.922 44.266 0.120 3.230 -0.908 H13 YBY 33 YBY HO24 HO24 H 0 0 N N N 20.500 45.401 47.206 1.444 6.055 1.019 HO24 YBY 34 YBY HN12 HN12 H 0 0 N N N 18.038 46.193 43.948 0.569 1.218 1.160 HN12 YBY 35 YBY HN10 HN10 H 0 0 N N N 16.137 45.710 42.917 2.008 -0.495 0.494 HN10 YBY 36 YBY H6 H6 H 0 1 N N N 15.666 43.224 41.640 3.864 0.300 -1.616 H6 YBY 37 YBY HO9 HO9 H 0 1 N N N 18.278 45.301 39.334 2.720 -2.167 -4.076 HO9 YBY 38 YBY H5 H5 H 0 1 N N N 14.330 44.659 39.911 3.515 -2.299 -0.057 H5 YBY 39 YBY H5A H5A H 0 1 N N N 13.838 44.818 41.659 4.807 -1.998 -1.243 H5A YBY 40 YBY H4 H4 H 0 1 N N N 14.915 46.921 41.872 5.587 -0.063 0.097 H4 YBY 41 YBY H4A H4A H 0 1 N N N 15.718 46.714 40.222 4.294 -0.364 1.283 H4A YBY 42 YBY HO3 HO3 H 0 1 N N N 12.946 48.973 39.917 7.200 -2.122 2.668 HO3 YBY 43 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YBY I18 C17 SING N N 1 YBY C16 C17 DOUB Y N 2 YBY C17 C19 SING Y N 3 YBY C16 C15 SING Y N 4 YBY C16 H16 SING N N 5 YBY C19 C21 DOUB Y N 6 YBY C19 O20 SING N N 7 YBY O20 HO20 SING N N 8 YBY C22 C21 SING Y N 9 YBY C21 H21 SING N N 10 YBY C15 C22 DOUB Y N 11 YBY C22 H22 SING N N 12 YBY C14 C15 SING N N 13 YBY C14 C13 SING N N 14 YBY C14 H14 SING N N 15 YBY C14 H14A SING N N 16 YBY N12 C13 SING N N 17 YBY C13 C23 SING N N 18 YBY C13 H13 SING N N 19 YBY C23 O25 DOUB N N 20 YBY C23 O24 SING N N 21 YBY O24 HO24 SING N N 22 YBY C11 N12 SING N N 23 YBY N12 HN12 SING N N 24 YBY O26 C11 DOUB N N 25 YBY N10 C11 SING N N 26 YBY C6 N10 SING N N 27 YBY N10 HN10 SING N N 28 YBY C7 C6 SING N N 29 YBY C5 C6 SING N N 30 YBY C6 H6 SING N N 31 YBY O8 C7 DOUB N N 32 YBY O9 C7 SING N N 33 YBY O9 HO9 SING N N 34 YBY C4 C5 SING N N 35 YBY C5 H5 SING N N 36 YBY C5 H5A SING N N 37 YBY C2 C4 SING N N 38 YBY C4 H4 SING N N 39 YBY C4 H4A SING N N 40 YBY O1 C2 DOUB N N 41 YBY C2 O3 SING N N 42 YBY O3 HO3 SING N N 43 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YBY SMILES ACDLabs 10.04 "Ic1cc(ccc1O)CC(C(=O)O)NC(=O)NC(C(=O)O)CCC(=O)O" YBY SMILES_CANONICAL CACTVS 3.341 "OC(=O)CC[C@H](NC(=O)N[C@@H](Cc1ccc(O)c(I)c1)C(O)=O)C(O)=O" YBY SMILES CACTVS 3.341 "OC(=O)CC[CH](NC(=O)N[CH](Cc1ccc(O)c(I)c1)C(O)=O)C(O)=O" YBY SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cc(c(cc1C[C@@H](C(=O)O)NC(=O)N[C@@H](CCC(=O)O)C(=O)O)I)O" YBY SMILES "OpenEye OEToolkits" 1.5.0 "c1cc(c(cc1CC(C(=O)O)NC(=O)NC(CCC(=O)O)C(=O)O)I)O" YBY InChI InChI 1.03 "InChI=1S/C15H17IN2O8/c16-8-5-7(1-3-11(8)19)6-10(14(24)25)18-15(26)17-9(13(22)23)2-4-12(20)21/h1,3,5,9-10,19H,2,4,6H2,(H,20,21)(H,22,23)(H,24,25)(H2,17,18,26)/t9-,10-/m0/s1" YBY InChIKey InChI 1.03 GUNPTUQXZIVQBT-UWVGGRQHSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YBY "SYSTEMATIC NAME" ACDLabs 10.04 "N-{[(1S)-1-carboxy-2-(4-hydroxy-3-iodophenyl)ethyl]carbamoyl}-L-glutamic acid" YBY "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-[[(2S)-1-hydroxy-3-(4-hydroxy-3-iodo-phenyl)-1-oxo-propan-2-yl]carbamoylamino]pentanedioic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YBY "Create component" 2008-06-05 RCSB YBY "Modify aromatic_flag" 2011-06-04 RCSB YBY "Modify descriptor" 2011-06-04 RCSB YBY "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id YBY _pdbx_chem_comp_synonyms.name "(S)-2-(3-((S)-1-carboxy-2-(4-hydroxy-3-iodophenyl)ethyl)ureido)pentanedioic acid" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##