data_YC0 # _chem_comp.id YC0 _chem_comp.name "methyl (2~{S})-2-[[(2~{R},4~{a}~{S},6~{a}~{R},6~{a}~{S},14~{a}~{S},14~{b}~{R})-2,4~{a},6~{a},6~{a},9,14~{a}-hexamethyl-10-oxidanyl-11-oxidanylidene-1,3,4,5,6,13,14,14~{b}-octahydropicen-2-yl]carbamoylamino]-3-oxidanyl-propanoate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C33 H46 N2 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-11-29 _chem_comp.pdbx_modified_date 2024-06-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 566.728 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YC0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8X73 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YC0 C1 C1 C 0 1 N N N N N N -23.964 54.659 4.598 -4.913 2.233 -1.072 C1 YC0 1 YC0 C10 C2 C 0 1 N N R N N N -27.756 56.165 5.337 -3.187 -0.684 0.734 C10 YC0 2 YC0 C11 C3 C 0 1 N N S N N N -29.257 57.437 3.564 -1.719 -2.504 -0.419 C11 YC0 3 YC0 C12 C4 C 0 1 N N S N N N -30.326 56.357 3.816 -0.564 -2.056 0.493 C12 YC0 4 YC0 C13 C5 C 0 1 N N N N N N -30.242 55.915 5.252 -1.152 -1.692 1.862 C13 YC0 5 YC0 C14 C6 C 0 1 N N N N N N -28.881 55.276 5.592 -2.073 -0.482 1.753 C14 YC0 6 YC0 C15 C7 C 0 1 N N N N N N -29.369 57.784 2.093 -1.143 -2.829 -1.798 C15 YC0 7 YC0 C16 C8 C 0 1 N N N N N N -30.705 58.429 1.761 -0.175 -4.002 -1.691 C16 YC0 8 YC0 C17 C9 C 0 1 N N S N N N -31.957 57.679 2.228 0.948 -3.760 -0.686 C17 YC0 9 YC0 C18 C10 C 0 1 N N R N N N -31.760 56.938 3.545 0.467 -3.153 0.620 C18 YC0 10 YC0 C19 C11 C 0 1 N N N N N N -32.457 56.734 1.105 2.064 -2.939 -1.322 C19 YC0 11 YC0 C2 C12 C 0 1 N N N N N N -25.251 55.563 4.457 -4.231 1.012 -0.857 C2 YC0 12 YC0 C20 C13 C 0 1 N N N N N N -33.829 56.090 1.486 3.254 -2.849 -0.373 C20 YC0 13 YC0 C21 C14 C 0 1 N N R N N N -33.666 55.162 2.662 2.861 -2.224 0.962 C21 YC0 14 YC0 C22 C15 C 0 1 N N N N N N -32.871 55.867 3.827 1.613 -2.841 1.568 C22 YC0 15 YC0 C23 C16 C 0 1 N N N N N N -22.760 54.900 3.672 -5.358 2.643 -2.453 C23 YC0 16 YC0 C24 C17 C 0 1 N N N N N N -27.598 57.148 6.521 -4.269 -1.562 1.378 C24 YC0 17 YC0 C25 C18 C 0 1 N N N N N N -29.540 58.761 4.346 -2.416 -3.748 0.125 C25 YC0 18 YC0 C26 C19 C 0 1 N N N N N N -33.072 58.722 2.482 1.525 -5.162 -0.358 C26 YC0 19 YC0 C27 C20 C 0 1 N N N N N N -29.992 55.144 2.931 0.026 -0.776 -0.108 C27 YC0 20 YC0 C28 C21 C 0 1 N N N N N N -35.035 54.689 3.148 4.027 -2.509 1.945 C28 YC0 21 YC0 C29 C22 C 0 1 N N N N N N -32.365 52.906 2.999 3.808 -0.067 0.353 C29 YC0 22 YC0 C3 C23 C 0 1 N N N N N N -26.426 55.291 5.390 -3.863 0.635 0.456 C3 YC0 23 YC0 C30 C24 C 0 1 N N S N N N -30.959 50.776 2.827 4.854 2.039 -0.289 C30 YC0 24 YC0 C31 C25 C 0 1 N N N N N N -31.121 49.516 2.049 4.782 2.057 -1.817 C31 YC0 25 YC0 C32 C26 C 0 1 N N N N N N -29.496 51.247 2.745 4.796 3.451 0.234 C32 YC0 26 YC0 C33 C27 C 0 1 N N N N N N -27.364 51.686 3.748 5.618 5.680 0.417 C33 YC0 27 YC0 C4 C28 C 0 1 N N N N N N -26.360 54.213 6.411 -4.123 1.469 1.497 C4 YC0 28 YC0 C5 C29 C 0 1 N N N N N N -25.131 53.355 6.531 -4.772 2.699 1.280 C5 YC0 29 YC0 C6 C30 C 0 1 N N N N N N -23.927 53.602 5.602 -5.175 3.062 -0.026 C6 YC0 30 YC0 C7 C31 C 0 1 N N N N N N -25.348 56.620 3.489 -3.914 0.172 -1.925 C7 YC0 31 YC0 C8 C32 C 0 1 N N N N N N -26.636 57.109 3.091 -3.079 -0.936 -1.729 C8 YC0 32 YC0 C9 C33 C 0 1 N N N N N N -27.861 56.886 3.934 -2.687 -1.343 -0.514 C9 YC0 33 YC0 N1 N1 N 0 1 N N N N N N -32.887 54.008 2.168 2.769 -0.770 0.844 N1 YC0 34 YC0 N2 N2 N 0 1 N N N N N N -31.640 51.899 2.199 3.723 1.274 0.244 N2 YC0 35 YC0 O1 O1 O 0 1 N N N N N N -25.091 52.348 7.493 -4.988 3.451 2.220 O1 YC0 36 YC0 O2 O2 O 0 1 N N N N N N -22.780 52.785 5.746 -5.825 4.238 -0.239 O2 YC0 37 YC0 O3 O3 O 0 1 N N N N N N -32.513 52.801 4.173 4.823 -0.642 0.009 O3 YC0 38 YC0 O4 O4 O 0 1 N N N N N N -30.264 48.561 2.613 3.614 2.770 -2.230 O4 YC0 39 YC0 O5 O5 O 0 1 N N N N N N -28.715 51.269 3.912 5.737 4.338 -0.124 O5 YC0 40 YC0 O6 O6 O 0 1 N N N N N N -29.009 51.605 1.710 3.902 3.784 0.975 O6 YC0 41 YC0 H1 H1 H 0 1 N N N N N N -30.393 56.791 5.900 -1.674 -2.539 2.292 H1 YC0 42 YC0 H2 H2 H 0 1 N N N N N N -31.036 55.177 5.441 -0.323 -1.433 2.533 H2 YC0 43 YC0 H3 H3 H 0 1 N N N N N N -28.878 55.004 6.658 -1.515 0.426 1.532 H3 YC0 44 YC0 H4 H4 H 0 1 N N N N N N -28.757 54.369 4.981 -2.542 -0.326 2.742 H4 YC0 45 YC0 H5 H5 H 0 1 N N N N N N -29.263 56.863 1.502 -1.975 -3.130 -2.453 H5 YC0 46 YC0 H6 H6 H 0 1 N N N N N N -28.562 58.484 1.831 -0.661 -1.969 -2.245 H6 YC0 47 YC0 H7 H7 H 0 1 N N N N N N -30.720 59.426 2.225 -0.705 -4.920 -1.438 H7 YC0 48 YC0 H8 H8 H 0 1 N N N N N N -30.765 58.532 0.667 0.282 -4.164 -2.681 H8 YC0 49 YC0 H9 H9 H 0 1 N N N N N N -31.903 57.699 4.326 -0.069 -4.004 1.141 H9 YC0 50 YC0 H10 H10 H 0 1 N N N N N N -31.716 55.936 0.949 2.392 -3.450 -2.240 H10 YC0 51 YC0 H11 H11 H 0 1 N N N N N N -32.576 57.311 0.176 1.722 -1.951 -1.605 H11 YC0 52 YC0 H12 H12 H 0 1 N N N N N N -34.542 56.885 1.748 3.710 -3.822 -0.215 H12 YC0 53 YC0 H13 H13 H 0 1 N N N N N N -34.214 55.521 0.626 4.017 -2.206 -0.841 H13 YC0 54 YC0 H14 H14 H 0 1 N N N N N N -33.624 56.363 4.458 1.248 -2.172 2.363 H14 YC0 55 YC0 H15 H15 H 0 1 N N N N N N -32.385 55.063 4.399 1.902 -3.772 2.085 H15 YC0 56 YC0 H16 H16 H 0 1 N N N N N N -21.962 54.182 3.913 -5.856 3.611 -2.402 H16 YC0 57 YC0 H17 H17 H 0 1 N N N N N N -23.070 54.766 2.625 -4.489 2.716 -3.108 H17 YC0 58 YC0 H18 H18 H 0 1 N N N N N N -22.387 55.925 3.815 -6.049 1.899 -2.849 H18 YC0 59 YC0 H19 H19 H 0 1 N N N N N N -27.531 56.582 7.462 -5.081 -1.718 0.668 H19 YC0 60 YC0 H20 H20 H 0 1 N N N N N N -26.682 57.742 6.385 -3.839 -2.525 1.655 H20 YC0 61 YC0 H21 H21 H 0 1 N N N N N N -28.468 57.820 6.558 -4.656 -1.068 2.269 H21 YC0 62 YC0 H22 H22 H 0 1 N N N N N N -29.472 58.570 5.427 -2.692 -3.584 1.166 H22 YC0 63 YC0 H23 H23 H 0 1 N N N N N N -28.798 59.521 4.061 -3.312 -3.948 -0.462 H23 YC0 64 YC0 H24 H24 H 0 1 N N N N N N -30.549 59.123 4.100 -1.741 -4.601 0.058 H24 YC0 65 YC0 H25 H25 H 0 1 N N N N N N -32.754 59.414 3.276 1.902 -5.623 -1.272 H25 YC0 66 YC0 H26 H26 H 0 1 N N N N N N -33.263 59.287 1.558 2.338 -5.061 0.360 H26 YC0 67 YC0 H27 H27 H 0 1 N N N N N N -33.993 58.206 2.793 0.740 -5.787 0.067 H27 YC0 68 YC0 H28 H28 H 0 1 N N N N N N -28.979 54.785 3.167 -0.777 -0.162 -0.516 H28 YC0 69 YC0 H29 H29 H 0 1 N N N N N N -30.719 54.341 3.120 0.551 -0.219 0.667 H29 YC0 70 YC0 H30 H30 H 0 1 N N N N N N -30.039 55.439 1.872 0.723 -1.036 -0.904 H30 YC0 71 YC0 H31 H31 H 0 1 N N N N N N -34.907 54.013 4.006 4.944 -2.061 1.561 H31 YC0 72 YC0 H32 H32 H 0 1 N N N N N N -35.636 55.558 3.453 3.794 -2.080 2.920 H32 YC0 73 YC0 H33 H33 H 0 1 N N N N N N -35.549 54.156 2.334 4.163 -3.586 2.045 H33 YC0 74 YC0 H34 H34 H 0 1 N N N N N N -31.266 50.643 3.875 5.788 1.573 0.026 H34 YC0 75 YC0 H35 H35 H 0 1 N N N N N N -30.852 49.687 0.996 5.668 2.549 -2.216 H35 YC0 76 YC0 H36 H36 H 0 1 N N N N N N -32.163 49.168 2.109 4.734 1.034 -2.190 H36 YC0 77 YC0 H37 H37 H 0 1 N N N N N N -26.852 51.664 4.721 4.669 6.116 0.102 H37 YC0 78 YC0 H38 H38 H 0 1 N N N N N N -26.853 51.007 3.050 5.655 5.638 1.505 H38 YC0 79 YC0 H39 H39 H 0 1 N N N N N N -27.343 52.709 3.346 6.440 6.295 0.049 H39 YC0 80 YC0 H40 H40 H 0 1 N N N N N N -27.199 54.045 7.070 -3.833 1.192 2.501 H40 YC0 81 YC0 H41 H41 H 0 1 N N N N N N -24.452 57.046 3.062 -4.264 0.376 -2.925 H41 YC0 82 YC0 H43 H43 H 0 1 N N N N N N -26.729 57.651 2.162 -2.744 -1.478 -2.600 H43 YC0 83 YC0 H44 H44 H 0 1 N N N N N N -32.697 53.970 1.187 1.959 -0.312 1.118 H44 YC0 84 YC0 H45 H45 H 0 1 N N N N N N -31.616 51.990 1.203 2.914 1.732 0.519 H45 YC0 85 YC0 H47 H47 H 0 1 N N N N N N -22.924 52.156 6.443 -5.966 4.760 0.562 H47 YC0 86 YC0 H48 H48 H 0 1 N N N N N N -30.344 47.743 2.137 3.504 2.821 -3.190 H48 YC0 87 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YC0 C19 C20 SING N N 1 YC0 C19 C17 SING N N 2 YC0 C20 C21 SING N N 3 YC0 O6 C32 DOUB N N 4 YC0 C16 C15 SING N N 5 YC0 C16 C17 SING N N 6 YC0 C31 O4 SING N N 7 YC0 C31 C30 SING N N 8 YC0 C15 C11 SING N N 9 YC0 N1 C21 SING N N 10 YC0 N1 C29 SING N N 11 YC0 N2 C30 SING N N 12 YC0 N2 C29 SING N N 13 YC0 C17 C26 SING N N 14 YC0 C17 C18 SING N N 15 YC0 C21 C28 SING N N 16 YC0 C21 C22 SING N N 17 YC0 C32 C30 SING N N 18 YC0 C32 O5 SING N N 19 YC0 C27 C12 SING N N 20 YC0 C29 O3 DOUB N N 21 YC0 C8 C7 SING N N 22 YC0 C8 C9 DOUB N N 23 YC0 C7 C2 DOUB N N 24 YC0 C18 C12 SING N N 25 YC0 C18 C22 SING N N 26 YC0 C11 C12 SING N N 27 YC0 C11 C9 SING N N 28 YC0 C11 C25 SING N N 29 YC0 C23 C1 SING N N 30 YC0 C33 O5 SING N N 31 YC0 C12 C13 SING N N 32 YC0 C9 C10 SING N N 33 YC0 C2 C1 SING N N 34 YC0 C2 C3 SING N N 35 YC0 C1 C6 DOUB N N 36 YC0 C13 C14 SING N N 37 YC0 C10 C3 SING N N 38 YC0 C10 C14 SING N N 39 YC0 C10 C24 SING N N 40 YC0 C3 C4 DOUB N N 41 YC0 C6 O2 SING N N 42 YC0 C6 C5 SING N N 43 YC0 C4 C5 SING N N 44 YC0 C5 O1 DOUB N N 45 YC0 C13 H1 SING N N 46 YC0 C13 H2 SING N N 47 YC0 C14 H3 SING N N 48 YC0 C14 H4 SING N N 49 YC0 C15 H5 SING N N 50 YC0 C15 H6 SING N N 51 YC0 C16 H7 SING N N 52 YC0 C16 H8 SING N N 53 YC0 C18 H9 SING N N 54 YC0 C19 H10 SING N N 55 YC0 C19 H11 SING N N 56 YC0 C20 H12 SING N N 57 YC0 C20 H13 SING N N 58 YC0 C22 H14 SING N N 59 YC0 C22 H15 SING N N 60 YC0 C23 H16 SING N N 61 YC0 C23 H17 SING N N 62 YC0 C23 H18 SING N N 63 YC0 C24 H19 SING N N 64 YC0 C24 H20 SING N N 65 YC0 C24 H21 SING N N 66 YC0 C25 H22 SING N N 67 YC0 C25 H23 SING N N 68 YC0 C25 H24 SING N N 69 YC0 C26 H25 SING N N 70 YC0 C26 H26 SING N N 71 YC0 C26 H27 SING N N 72 YC0 C27 H28 SING N N 73 YC0 C27 H29 SING N N 74 YC0 C27 H30 SING N N 75 YC0 C28 H31 SING N N 76 YC0 C28 H32 SING N N 77 YC0 C28 H33 SING N N 78 YC0 C30 H34 SING N N 79 YC0 C31 H35 SING N N 80 YC0 C31 H36 SING N N 81 YC0 C33 H37 SING N N 82 YC0 C33 H38 SING N N 83 YC0 C33 H39 SING N N 84 YC0 C4 H40 SING N N 85 YC0 C7 H41 SING N N 86 YC0 C8 H43 SING N N 87 YC0 N1 H44 SING N N 88 YC0 N2 H45 SING N N 89 YC0 O2 H47 SING N N 90 YC0 O4 H48 SING N N 91 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YC0 InChI InChI 1.06 "InChI=1S/C33H46N2O6/c1-19-20-8-9-24-31(4,21(20)16-23(37)26(19)38)13-15-33(6)25-17-30(3,12-10-29(25,2)11-14-32(24,33)5)35-28(40)34-22(18-36)27(39)41-7/h8-9,16,22,25,36,38H,10-15,17-18H2,1-7H3,(H2,34,35,40)/t22-,25+,29+,30+,31-,32+,33-/m0/s1" YC0 InChIKey InChI 1.06 PJLZTFVARNCYGK-CPKSEDGTSA-N YC0 SMILES_CANONICAL CACTVS 3.385 "COC(=O)[C@H](CO)NC(=O)N[C@]1(C)CC[C@]2(C)CC[C@]3(C)C4=CC=C5C(=C(O)C(=O)C=C5[C@]4(C)CC[C@@]3(C)[C@@H]2C1)C" YC0 SMILES CACTVS 3.385 "COC(=O)[CH](CO)NC(=O)N[C]1(C)CC[C]2(C)CC[C]3(C)C4=CC=C5C(=C(O)C(=O)C=C5[C]4(C)CC[C]3(C)[CH]2C1)C" YC0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1=C(C(=O)C=C2C1=CC=C3[C@]2(CC[C@@]4([C@@]3(CC[C@@]5([C@H]4C[C@](CC5)(C)NC(=O)N[C@@H](CO)C(=O)OC)C)C)C)C)O" YC0 SMILES "OpenEye OEToolkits" 2.0.7 "CC1=C(C(=O)C=C2C1=CC=C3C2(CCC4(C3(CCC5(C4CC(CC5)(C)NC(=O)NC(CO)C(=O)OC)C)C)C)C)O" # _pdbx_chem_comp_identifier.comp_id YC0 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "methyl (2~{S})-2-[[(2~{R},4~{a}~{S},6~{a}~{R},6~{a}~{S},14~{a}~{S},14~{b}~{R})-2,4~{a},6~{a},6~{a},9,14~{a}-hexamethyl-10-oxidanyl-11-oxidanylidene-1,3,4,5,6,13,14,14~{b}-octahydropicen-2-yl]carbamoylamino]-3-oxidanyl-propanoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YC0 "Create component" 2023-11-29 PDBJ YC0 "Initial release" 2024-06-19 RCSB #