data_YCB # _chem_comp.id YCB _chem_comp.name "~{N}2-[3-(dimethylamino)propyl]-6-phenyl-~{N}4-(piperidin-4-ylmethyl)quinazoline-2,4-diamine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H34 N6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-13 _chem_comp.pdbx_modified_date 2024-01-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 418.578 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YCB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PD6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YCB C2 C1 C 0 1 Y N N N N N 14.309 -23.700 1.918 -0.262 0.523 -0.191 C2 YCB 1 YCB C3 C2 C 0 1 Y N N N N N 14.427 -23.320 0.569 -0.574 -0.858 -0.104 C3 YCB 2 YCB C11 C3 C 0 1 Y N N N N N 14.660 -21.490 -0.988 0.218 -3.157 0.056 C11 YCB 3 YCB C12 C4 C 0 1 Y N N N N N 14.571 -22.383 -2.056 -1.073 -3.588 0.070 C12 YCB 4 YCB C14 C5 C 0 1 Y N N N N N 14.424 -24.703 -3.002 -3.534 -3.176 0.018 C14 YCB 5 YCB C15 C6 C 0 1 N N N N N N 14.220 -25.428 3.658 -0.918 2.891 -0.359 C15 YCB 6 YCB C17 C7 C 0 1 N N N N N N 16.062 -21.544 5.584 5.734 0.182 -0.129 C17 YCB 7 YCB C18 C8 C 0 1 N N N N N N 13.066 -24.994 4.594 -2.201 3.722 -0.425 C18 YCB 8 YCB C19 C9 C 0 1 N N N N N N 10.581 -25.317 5.104 -4.218 4.467 0.845 C19 YCB 9 YCB C20 C10 C 0 1 N N N N N N 12.216 -25.204 6.953 -3.129 6.028 -0.655 C20 YCB 10 YCB C21 C11 C 0 1 N N N N N N 14.756 -20.965 4.995 4.395 -0.558 -0.087 C21 YCB 11 YCB C22 C12 C 0 1 N N N N N N 17.246 -20.545 5.507 6.878 -0.831 -0.052 C22 YCB 12 YCB C23 C13 C 0 1 Y N N N N N 14.008 -24.304 -4.275 -4.598 -2.278 -0.057 C23 YCB 13 YCB C24 C14 C 0 1 Y N N N N N 15.059 -25.950 -2.852 -3.788 -4.544 0.103 C24 YCB 14 YCB C25 C15 C 0 1 N N N N N N 18.374 -18.534 6.219 8.347 0.705 1.108 C25 YCB 15 YCB C26 C16 C 0 1 N N N N N N 16.577 -19.507 7.607 9.279 -1.062 -0.259 C26 YCB 16 YCB C27 C17 C 0 1 N N N N N N 13.398 -25.519 6.015 -1.846 5.194 -0.651 C27 YCB 17 YCB C28 C18 C 0 1 N N N N N N 11.722 -25.600 4.097 -2.967 3.586 0.893 C28 YCB 18 YCB C29 C19 C 0 1 Y N N N N N 15.198 -26.825 -3.943 -5.090 -5.001 0.119 C29 YCB 19 YCB C30 C20 C 0 1 Y N N N N N 14.126 -25.184 -5.360 -5.895 -2.748 -0.046 C30 YCB 20 YCB N1 N1 N 0 1 Y N N N N N 14.506 -22.797 2.911 1.014 0.879 -0.207 N1 YCB 21 YCB C4 C21 C 0 1 Y N N N N N 14.692 -21.517 2.613 1.987 -0.025 -0.139 C4 YCB 22 YCB N5 N2 N 0 1 Y N N N N N 14.654 -21.081 1.351 1.753 -1.320 -0.052 N5 YCB 23 YCB C6 C22 C 0 1 Y N N N N N 14.586 -21.963 0.317 0.495 -1.785 -0.033 C6 YCB 24 YCB C7 C23 C 0 1 Y N N N N N 14.329 -24.205 -0.524 -1.893 -1.317 -0.086 C7 YCB 25 YCB N8 N3 N 0 1 N N N N N N 14.094 -24.981 2.266 -1.261 1.470 -0.263 N8 YCB 26 YCB C9 C24 C 0 1 Y N N N N N 14.393 -23.745 -1.845 -2.137 -2.678 0.000 C9 YCB 27 YCB N10 N4 N 0 1 N N N N N N 10.979 -25.823 6.438 -3.825 5.865 0.628 N10 YCB 28 YCB N13 N5 N 0 1 N N N N N N 14.836 -20.612 3.594 3.299 0.412 -0.161 N13 YCB 29 YCB N16 N6 N 0 1 N N N N N N 17.083 -19.264 6.222 8.163 -0.121 -0.093 N16 YCB 30 YCB C31 C25 C 0 1 Y N N N N N 14.749 -26.418 -5.194 -6.142 -4.105 0.050 C31 YCB 31 YCB H1 H1 H 0 1 N N N N N N 14.786 -20.434 -1.175 1.027 -3.870 0.110 H1 YCB 32 YCB H2 H2 H 0 1 N N N N N N 14.642 -22.009 -3.067 -1.280 -4.646 0.136 H2 YCB 33 YCB H3 H3 H 0 1 N N N N N N 14.266 -26.527 3.660 -0.328 3.062 -1.260 H3 YCB 34 YCB H4 H4 H 0 1 N N N N N N 15.158 -25.021 4.063 -0.339 3.185 0.516 H4 YCB 35 YCB H5 H5 H 0 1 N N N N N N 15.888 -21.803 6.639 5.808 0.744 -1.059 H5 YCB 36 YCB H6 H6 H 0 1 N N N N N N 16.330 -22.451 5.023 5.797 0.867 0.716 H6 YCB 37 YCB H7 H7 H 0 1 N N N N N N 12.993 -23.897 4.611 -2.823 3.367 -1.247 H7 YCB 38 YCB H8 H8 H 0 1 N N N N N N 10.399 -24.234 5.160 -4.861 4.139 0.028 H8 YCB 39 YCB H9 H9 H 0 1 N N N N N N 9.664 -25.827 4.775 -4.758 4.383 1.788 H9 YCB 40 YCB H10 H10 H 0 1 N N N N N N 12.431 -25.602 7.956 -2.879 7.079 -0.802 H10 YCB 41 YCB H11 H11 H 0 1 N N N N N N 12.080 -24.114 7.013 -3.777 5.693 -1.465 H11 YCB 42 YCB H12 H12 H 0 1 N N N N N N 14.494 -20.060 5.563 4.331 -1.243 -0.932 H12 YCB 43 YCB H13 H13 H 0 1 N N N N N N 13.962 -21.716 5.115 4.320 -1.121 0.844 H13 YCB 44 YCB H14 H14 H 0 1 N N N N N N 18.133 -21.047 5.921 6.803 -1.394 0.878 H14 YCB 45 YCB H15 H15 H 0 1 N N N N N N 17.418 -20.314 4.445 6.814 -1.516 -0.897 H15 YCB 46 YCB H16 H16 H 0 1 N N N N N N 13.595 -23.317 -4.423 -4.406 -1.217 -0.123 H16 YCB 47 YCB H17 H17 H 0 1 N N N N N N 15.445 -26.238 -1.885 -2.968 -5.244 0.157 H17 YCB 48 YCB H18 H18 H 0 1 N N N N N N 18.257 -17.578 6.751 8.326 0.070 1.993 H18 YCB 49 YCB H19 H19 H 0 1 N N N N N N 19.140 -19.142 6.722 9.306 1.220 1.052 H19 YCB 50 YCB H20 H20 H 0 1 N N N N N N 18.683 -18.340 5.181 7.543 1.440 1.169 H20 YCB 51 YCB H21 H21 H 0 1 N N N N N N 16.460 -18.546 8.129 9.154 -1.612 -1.192 H21 YCB 52 YCB H22 H22 H 0 1 N N N N N N 15.604 -20.018 7.557 10.219 -0.510 -0.286 H22 YCB 53 YCB H23 H23 H 0 1 N N N N N N 17.294 -20.136 8.154 9.293 -1.762 0.576 H23 YCB 54 YCB H24 H24 H 0 1 N N N N N N 13.560 -26.606 5.978 -1.191 5.537 0.150 H24 YCB 55 YCB H25 H25 H 0 1 N N N N N N 14.307 -25.025 6.388 -1.338 5.303 -1.609 H25 YCB 56 YCB H26 H26 H 0 1 N N N N N N 11.463 -25.154 3.125 -3.260 2.546 1.039 H26 YCB 57 YCB H27 H27 H 0 1 N N N N N N 11.839 -26.688 3.982 -2.330 3.904 1.719 H27 YCB 58 YCB H28 H28 H 0 1 N N N N N N 15.647 -27.799 -3.811 -5.288 -6.061 0.186 H28 YCB 59 YCB H29 H29 H 0 1 N N N N N N 13.733 -24.904 -6.326 -6.720 -2.053 -0.100 H29 YCB 60 YCB H30 H30 H 0 1 N N N N N N 14.202 -25.261 -0.338 -2.714 -0.618 -0.140 H30 YCB 61 YCB H31 H31 H 0 1 N N N N N N 13.159 -25.197 1.984 -2.191 1.195 -0.250 H31 YCB 62 YCB H32 H32 H 0 1 N N N N N N 10.238 -25.635 7.083 -4.624 6.478 0.686 H32 YCB 63 YCB H34 H34 H 0 1 N N N N N N 15.738 -20.201 3.462 3.494 1.360 -0.225 H34 YCB 64 YCB H36 H36 H 0 1 N N N N N N 14.885 -27.066 -6.047 -7.159 -4.468 0.058 H36 YCB 65 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YCB C30 C31 DOUB Y N 1 YCB C30 C23 SING Y N 2 YCB C31 C29 SING Y N 3 YCB C23 C14 DOUB Y N 4 YCB C29 C24 DOUB Y N 5 YCB C14 C24 SING Y N 6 YCB C14 C9 SING N N 7 YCB C12 C9 DOUB Y N 8 YCB C12 C11 SING Y N 9 YCB C9 C7 SING Y N 10 YCB C11 C6 DOUB Y N 11 YCB C7 C3 DOUB Y N 12 YCB C6 C3 SING Y N 13 YCB C6 N5 SING Y N 14 YCB C3 C2 SING Y N 15 YCB N5 C4 DOUB Y N 16 YCB C2 N8 SING N N 17 YCB C2 N1 DOUB Y N 18 YCB N8 C15 SING N N 19 YCB C4 N1 SING Y N 20 YCB C4 N13 SING N N 21 YCB N13 C21 SING N N 22 YCB C15 C18 SING N N 23 YCB C28 C18 SING N N 24 YCB C28 C19 SING N N 25 YCB C18 C27 SING N N 26 YCB C21 C17 SING N N 27 YCB C19 N10 SING N N 28 YCB C22 C17 SING N N 29 YCB C22 N16 SING N N 30 YCB C27 C20 SING N N 31 YCB C25 N16 SING N N 32 YCB N16 C26 SING N N 33 YCB N10 C20 SING N N 34 YCB C11 H1 SING N N 35 YCB C12 H2 SING N N 36 YCB C15 H3 SING N N 37 YCB C15 H4 SING N N 38 YCB C17 H5 SING N N 39 YCB C17 H6 SING N N 40 YCB C18 H7 SING N N 41 YCB C19 H8 SING N N 42 YCB C19 H9 SING N N 43 YCB C20 H10 SING N N 44 YCB C20 H11 SING N N 45 YCB C21 H12 SING N N 46 YCB C21 H13 SING N N 47 YCB C22 H14 SING N N 48 YCB C22 H15 SING N N 49 YCB C23 H16 SING N N 50 YCB C24 H17 SING N N 51 YCB C25 H18 SING N N 52 YCB C25 H19 SING N N 53 YCB C25 H20 SING N N 54 YCB C26 H21 SING N N 55 YCB C26 H22 SING N N 56 YCB C26 H23 SING N N 57 YCB C27 H24 SING N N 58 YCB C27 H25 SING N N 59 YCB C28 H26 SING N N 60 YCB C28 H27 SING N N 61 YCB C29 H28 SING N N 62 YCB C30 H29 SING N N 63 YCB C7 H30 SING N N 64 YCB N8 H31 SING N N 65 YCB N10 H32 SING N N 66 YCB N13 H34 SING N N 67 YCB C31 H36 SING N N 68 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YCB InChI InChI 1.06 "InChI=1S/C25H34N6/c1-31(2)16-6-13-27-25-29-23-10-9-21(20-7-4-3-5-8-20)17-22(23)24(30-25)28-18-19-11-14-26-15-12-19/h3-5,7-10,17,19,26H,6,11-16,18H2,1-2H3,(H2,27,28,29,30)" YCB InChIKey InChI 1.06 ZQESDCZQQXAWMA-UHFFFAOYSA-N YCB SMILES_CANONICAL CACTVS 3.385 "CN(C)CCCNc1nc(NCC2CCNCC2)c3cc(ccc3n1)c4ccccc4" YCB SMILES CACTVS 3.385 "CN(C)CCCNc1nc(NCC2CCNCC2)c3cc(ccc3n1)c4ccccc4" YCB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)CCCNc1nc2ccc(cc2c(n1)NCC3CCNCC3)c4ccccc4" YCB SMILES "OpenEye OEToolkits" 2.0.7 "CN(C)CCCNc1nc2ccc(cc2c(n1)NCC3CCNCC3)c4ccccc4" # _pdbx_chem_comp_identifier.comp_id YCB _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}2-[3-(dimethylamino)propyl]-6-phenyl-~{N}4-(piperidin-4-ylmethyl)quinazoline-2,4-diamine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YCB "Create component" 2023-06-13 PDBE YCB "Initial release" 2024-01-31 RCSB #