data_YCE # _chem_comp.id YCE _chem_comp.name "[(2R)-2-hydroxy-3-{[(4-oxo-4,5-dihydro-3H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]amino}propyl]phosphonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H15 N4 O5 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-01-24 _chem_comp.pdbx_modified_date 2023-07-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 302.224 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YCE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8FWZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YCE C10 C1 C 0 1 Y N N -1.016 106.725 104.749 2.395 -1.128 0.578 C10 YCE 1 YCE N12 N1 N 0 1 N N N 1.149 107.880 105.035 0.002 -0.736 0.420 N12 YCE 2 YCE C13 C2 C 0 1 N N N 1.641 107.411 103.739 -1.304 -0.825 1.086 C13 YCE 3 YCE C15 C3 C 0 1 N N N 1.749 107.826 101.223 -3.733 -0.273 0.883 C15 YCE 4 YCE C02 C4 C 0 1 N N N -2.410 103.591 105.771 5.272 0.673 -0.574 C02 YCE 5 YCE C04 C5 C 0 1 N N N -1.548 104.465 107.865 3.928 2.221 0.580 C04 YCE 6 YCE C06 C6 C 0 1 Y N N -1.322 105.757 105.682 3.175 0.041 0.442 C06 YCE 7 YCE C07 C7 C 0 1 Y N N -1.955 104.776 104.992 4.311 -0.320 -0.290 C07 YCE 8 YCE C09 C8 C 0 1 Y N N -1.500 106.252 103.523 3.047 -2.134 -0.041 C09 YCE 9 YCE C11 C9 C 0 1 N N N -0.301 108.028 105.112 1.073 -1.235 1.293 C11 YCE 10 YCE C14 C10 C 0 1 N N R 1.138 108.262 102.548 -2.391 -0.298 0.147 C14 YCE 11 YCE N03 N2 N 0 1 N N N -2.220 103.437 107.153 5.050 1.928 -0.127 N03 YCE 12 YCE N05 N3 N 0 1 N N N -1.099 105.633 107.128 3.028 1.322 0.854 N05 YCE 13 YCE N08 N4 N 0 1 Y N N -2.053 105.080 103.712 4.206 -1.661 -0.577 N08 YCE 14 YCE O01 O1 O 0 1 N N N -2.927 102.790 105.189 6.278 0.404 -1.209 O01 YCE 15 YCE O17 O2 O 0 1 N N N 1.422 107.495 98.755 -4.536 1.831 -0.613 O17 YCE 16 YCE O18 O3 O 0 1 N N N 0.877 109.727 99.339 -5.239 -0.434 -1.478 O18 YCE 17 YCE O19 O4 O 0 1 N N N -0.687 108.103 99.877 -6.375 0.637 0.637 O19 YCE 18 YCE O20 O5 O 0 1 N N N 1.320 109.627 102.800 -2.490 -1.151 -0.995 O20 YCE 19 YCE P16 P1 P 0 1 N N N 0.759 108.317 99.728 -4.997 0.492 -0.183 P16 YCE 20 YCE H121 H1 H 0 0 N N N 1.434 107.224 105.734 -0.006 -1.230 -0.460 H121 YCE 21 YCE H131 H3 H 0 0 N N N 1.306 106.374 103.593 -1.514 -1.865 1.337 H131 YCE 22 YCE H132 H4 H 0 0 N N N 2.740 107.443 103.751 -1.289 -0.227 1.997 H132 YCE 23 YCE H152 H5 H 0 0 N N N 1.842 106.730 101.230 -4.031 -1.293 1.127 H152 YCE 24 YCE H151 H6 H 0 0 N N N 2.748 108.278 101.139 -3.633 0.305 1.801 H151 YCE 25 YCE H041 H7 H 0 0 N N N -1.375 104.381 108.928 3.778 3.234 0.926 H041 YCE 26 YCE H091 H8 H 0 0 N N N -1.429 106.769 102.577 2.700 -3.154 -0.107 H091 YCE 27 YCE H112 H9 H 0 0 N N N -0.618 108.816 104.413 0.880 -2.277 1.546 H112 YCE 28 YCE H111 H10 H 0 0 N N N -0.577 108.314 106.138 1.105 -0.639 2.206 H111 YCE 29 YCE H141 H11 H 0 0 N N N 0.057 108.073 102.470 -2.136 0.712 -0.175 H141 YCE 30 YCE H031 H12 H 0 0 N N N -2.551 102.620 107.626 5.699 2.625 -0.311 H031 YCE 31 YCE H081 H13 H 0 0 N N N -2.477 104.512 103.006 4.854 -2.185 -1.073 H081 YCE 32 YCE H2 H14 H 0 1 N N N 1.366 109.792 98.527 -5.543 -1.328 -1.271 H2 YCE 33 YCE H3 H15 H 0 1 N N N -0.970 107.422 99.278 -7.095 1.038 0.130 H3 YCE 34 YCE H201 H16 H 0 0 N N N 0.924 109.851 103.634 -2.716 -2.068 -0.783 H201 YCE 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YCE O17 P16 DOUB N N 1 YCE O18 P16 SING N N 2 YCE P16 O19 SING N N 3 YCE P16 C15 SING N N 4 YCE C15 C14 SING N N 5 YCE C14 O20 SING N N 6 YCE C14 C13 SING N N 7 YCE C09 N08 SING Y N 8 YCE C09 C10 DOUB Y N 9 YCE N08 C07 SING Y N 10 YCE C13 N12 SING N N 11 YCE C10 C11 SING N N 12 YCE C10 C06 SING Y N 13 YCE C07 C06 DOUB Y N 14 YCE C07 C02 SING N N 15 YCE N12 C11 SING N N 16 YCE O01 C02 DOUB N N 17 YCE C06 N05 SING N N 18 YCE C02 N03 SING N N 19 YCE N05 C04 DOUB N N 20 YCE N03 C04 SING N N 21 YCE N12 H121 SING N N 22 YCE C13 H131 SING N N 23 YCE C13 H132 SING N N 24 YCE C15 H152 SING N N 25 YCE C15 H151 SING N N 26 YCE C04 H041 SING N N 27 YCE C09 H091 SING N N 28 YCE C11 H112 SING N N 29 YCE C11 H111 SING N N 30 YCE C14 H141 SING N N 31 YCE N03 H031 SING N N 32 YCE N08 H081 SING N N 33 YCE O18 H2 SING N N 34 YCE O19 H3 SING N N 35 YCE O20 H201 SING N N 36 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YCE SMILES ACDLabs 12.01 "O=P(O)(O)CC(O)CNCc1c[NH]c2c1N=CNC2=O" YCE InChI InChI 1.06 "InChI=1S/C10H15N4O5P/c15-7(4-20(17,18)19)3-11-1-6-2-12-9-8(6)13-5-14-10(9)16/h2,5,7,11-12,15H,1,3-4H2,(H,13,14,16)(H2,17,18,19)/t7-/m1/s1" YCE InChIKey InChI 1.06 GLYTVTTVHOOYFN-SSDOTTSWSA-N YCE SMILES_CANONICAL CACTVS 3.385 "O[C@H](CNCc1c[nH]c2C(=O)NC=Nc12)C[P](O)(O)=O" YCE SMILES CACTVS 3.385 "O[CH](CNCc1c[nH]c2C(=O)NC=Nc12)C[P](O)(O)=O" YCE SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c(c2c([nH]1)C(=O)NC=N2)CNC[C@H](CP(=O)(O)O)O" YCE SMILES "OpenEye OEToolkits" 2.0.7 "c1c(c2c([nH]1)C(=O)NC=N2)CNCC(CP(=O)(O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YCE "SYSTEMATIC NAME" ACDLabs 12.01 "[(2R)-2-hydroxy-3-{[(4-oxo-4,5-dihydro-3H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]amino}propyl]phosphonic acid" YCE "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(2~{R})-2-oxidanyl-3-[(4-oxidanylidene-3,5-dihydropyrrolo[3,2-d]pyrimidin-7-yl)methylamino]propyl]phosphonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YCE "Create component" 2023-01-24 RCSB YCE "Initial release" 2023-07-19 RCSB #