data_YCV
#
_chem_comp.id YCV
_chem_comp.name "2-[4-(1~{H}-indazol-4-yl)-2-methanoyl-6-methoxy-phenoxy]-~{N},~{N}-dimethyl-ethanamide"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C19 H19 N3 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-02-22
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 353.372
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code YCV
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7LTN
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YCV N1 N1 N 0 1 Y N N N N N 6.912 1.530 17.196 -4.404 -2.346 -1.433 N1 YCV 1
YCV C7 C1 C 0 1 Y N N N N N 4.692 3.049 19.619 -5.830 0.669 -0.017 C7 YCV 2
YCV C8 C2 C 0 1 Y N N N N N 5.601 2.332 18.842 -5.148 -0.438 -0.518 C8 YCV 3
YCV N2 N2 N 0 1 N N N N N N 10.192 -4.160 26.074 5.656 -0.579 -0.912 N2 YCV 4
YCV C9 C3 C 0 1 Y N N N N N 7.143 0.820 18.282 -3.347 -1.731 -0.986 C9 YCV 5
YCV O1 O1 O 0 1 N N N N N N 6.724 -4.091 19.399 0.377 -2.868 1.919 O1 YCV 6
YCV C1 C4 C 0 1 Y N N N N N 7.723 -1.440 23.236 0.580 1.518 0.122 C1 YCV 7
YCV C5 C5 C 0 1 Y N N N N N 5.242 1.632 21.489 -3.757 1.627 0.730 C5 YCV 8
YCV C6 C6 C 0 1 Y N N N N N 4.530 2.694 20.948 -5.136 1.686 0.599 C6 YCV 9
YCV C4 C7 C 0 1 Y N N N N N 6.146 0.895 20.719 -3.052 0.538 0.240 C4 YCV 10
YCV C3 C8 C 0 1 Y N N N N N 6.787 -0.304 21.320 -1.579 0.477 0.381 C3 YCV 11
YCV O3 O2 O 0 1 N N N N N N 8.025 -4.435 25.566 5.132 0.271 1.069 O3 YCV 12
YCV C2 C9 C 0 1 Y N N N N N 7.202 -0.298 22.656 -0.795 1.567 -0.007 C2 YCV 13
YCV N N3 N 0 1 Y N N N N N 5.965 2.453 17.539 -5.545 -1.581 -1.165 N YCV 14
YCV C C10 C 0 1 N N N N N N 7.865 -0.376 25.375 0.642 3.717 -0.782 C YCV 15
YCV O O3 O 0 1 N N N N N N 8.040 -1.540 24.564 1.336 2.583 -0.258 O YCV 16
YCV C10 C11 C 0 1 Y N N N N N 6.349 1.260 19.370 -3.750 -0.513 -0.394 C10 YCV 17
YCV C11 C12 C 0 1 Y N N N N N 6.932 -1.475 20.575 -0.978 -0.664 0.900 C11 YCV 18
YCV C12 C13 C 0 1 Y N N N N N 7.461 -2.635 21.136 0.413 -0.716 1.038 C12 YCV 19
YCV C13 C14 C 0 1 N N N N N N 7.376 -3.908 20.406 1.054 -1.918 1.586 C13 YCV 20
YCV C14 C15 C 0 1 Y N N N N N 7.856 -2.608 22.473 1.193 0.383 0.646 C14 YCV 21
YCV C15 C16 C 0 1 N N N N N N 9.492 -3.870 23.751 3.286 -0.170 -0.333 C15 YCV 22
YCV C16 C17 C 0 1 N N N N N N 9.165 -4.181 25.209 4.757 -0.143 -0.007 C16 YCV 23
YCV C17 C18 C 0 1 N N N N N N 10.028 -4.120 27.525 7.086 -0.553 -0.595 C17 YCV 24
YCV C18 C19 C 0 1 N N N N N N 11.558 -4.185 25.573 5.202 -1.080 -2.212 C18 YCV 25
YCV O2 O4 O 0 1 N N N N N N 8.254 -3.802 23.044 2.543 0.339 0.777 O2 YCV 26
YCV H2 H2 H 0 1 N N N N N N 4.126 3.864 19.193 -6.904 0.729 -0.112 H2 YCV 27
YCV H3 H3 H 0 1 N N N N N N 7.849 0.005 18.336 -2.331 -2.092 -1.056 H3 YCV 28
YCV H4 H4 H 0 1 N N N N N N 5.094 1.370 22.526 -3.228 2.434 1.215 H4 YCV 29
YCV H5 H5 H 0 1 N N N N N N 3.843 3.249 21.570 -5.672 2.541 0.984 H5 YCV 30
YCV H6 H6 H 0 1 N N N N N N 7.115 0.607 23.240 -1.266 2.451 -0.410 H6 YCV 31
YCV H7 H7 H 0 1 N N N N N N 8.157 -0.603 26.411 -0.047 4.100 -0.030 H7 YCV 32
YCV H8 H8 H 0 1 N N N N N N 8.494 0.439 24.987 1.360 4.492 -1.046 H8 YCV 33
YCV H9 H9 H 0 1 N N N N N N 6.809 -0.068 25.351 0.083 3.422 -1.670 H9 YCV 34
YCV H10 H10 H 0 1 N N N N N N 6.627 -1.482 19.539 -1.584 -1.505 1.201 H10 YCV 35
YCV H11 H11 H 0 1 N N N N N N 7.937 -4.745 20.796 2.128 -1.957 1.691 H11 YCV 36
YCV H12 H12 H 0 1 N N N N N N 10.123 -4.666 23.329 3.097 0.447 -1.211 H12 YCV 37
YCV H13 H13 H 0 1 N N N N N N 10.019 -2.907 23.680 2.978 -1.196 -0.537 H13 YCV 38
YCV H14 H14 H 0 1 N N N N N N 11.017 -4.109 28.006 7.372 -1.495 -0.127 H14 YCV 39
YCV H15 H15 H 0 1 N N N N N N 9.474 -3.212 27.806 7.659 -0.414 -1.512 H15 YCV 40
YCV H16 H16 H 0 1 N N N N N N 9.469 -5.008 27.855 7.291 0.270 0.090 H16 YCV 41
YCV H17 H17 H 0 1 N N N N N N 12.260 -4.162 26.420 5.021 -2.153 -2.145 H17 YCV 42
YCV H18 H18 H 0 1 N N N N N N 11.717 -5.103 24.989 4.280 -0.573 -2.495 H18 YCV 43
YCV H19 H19 H 0 1 N N N N N N 11.729 -3.308 24.931 5.969 -0.887 -2.963 H19 YCV 44
YCV H1 H1 H 0 1 N N N N N N 5.587 3.132 16.910 -6.457 -1.818 -1.396 H1 YCV 45
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YCV N1 N SING Y N 1
YCV N1 C9 DOUB Y N 2
YCV N C8 SING Y N 3
YCV C9 C10 SING Y N 4
YCV C8 C10 DOUB Y N 5
YCV C8 C7 SING Y N 6
YCV C10 C4 SING Y N 7
YCV O1 C13 DOUB N N 8
YCV C7 C6 DOUB Y N 9
YCV C13 C12 SING N N 10
YCV C11 C12 DOUB Y N 11
YCV C11 C3 SING Y N 12
YCV C4 C3 SING N N 13
YCV C4 C5 DOUB Y N 14
YCV C6 C5 SING Y N 15
YCV C12 C14 SING Y N 16
YCV C3 C2 DOUB Y N 17
YCV C14 O2 SING N N 18
YCV C14 C1 DOUB Y N 19
YCV C2 C1 SING Y N 20
YCV O2 C15 SING N N 21
YCV C1 O SING N N 22
YCV C15 C16 SING N N 23
YCV O C SING N N 24
YCV C16 O3 DOUB N N 25
YCV C16 N2 SING N N 26
YCV C18 N2 SING N N 27
YCV N2 C17 SING N N 28
YCV C7 H2 SING N N 29
YCV C9 H3 SING N N 30
YCV C5 H4 SING N N 31
YCV C6 H5 SING N N 32
YCV C2 H6 SING N N 33
YCV C H7 SING N N 34
YCV C H8 SING N N 35
YCV C H9 SING N N 36
YCV C11 H10 SING N N 37
YCV C13 H11 SING N N 38
YCV C15 H12 SING N N 39
YCV C15 H13 SING N N 40
YCV C17 H14 SING N N 41
YCV C17 H15 SING N N 42
YCV C17 H16 SING N N 43
YCV C18 H17 SING N N 44
YCV C18 H18 SING N N 45
YCV C18 H19 SING N N 46
YCV N H1 SING N N 47
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YCV InChI InChI 1.03 "InChI=1S/C19H19N3O4/c1-22(2)18(24)11-26-19-13(10-23)7-12(8-17(19)25-3)14-5-4-6-16-15(14)9-20-21-16/h4-10H,11H2,1-3H3,(H,20,21)"
YCV InChIKey InChI 1.03 LDHIKLLVVUEYPE-UHFFFAOYSA-N
YCV SMILES_CANONICAL CACTVS 3.385 "COc1cc(cc(C=O)c1OCC(=O)N(C)C)c2cccc3[nH]ncc23"
YCV SMILES CACTVS 3.385 "COc1cc(cc(C=O)c1OCC(=O)N(C)C)c2cccc3[nH]ncc23"
YCV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)C(=O)COc1c(cc(cc1OC)c2cccc3c2cn[nH]3)C=O"
YCV SMILES "OpenEye OEToolkits" 2.0.7 "CN(C)C(=O)COc1c(cc(cc1OC)c2cccc3c2cn[nH]3)C=O"
#
_pdbx_chem_comp_identifier.comp_id YCV
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "2-[4-(1~{H}-indazol-4-yl)-2-methanoyl-6-methoxy-phenoxy]-~{N},~{N}-dimethyl-ethanamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YCV "Create component" 2021-02-22 RCSB
YCV "Initial release" 2021-11-10 RCSB
YCV "Modify PCM" 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id YCV
_pdbx_chem_comp_pcm.modified_residue_id CYS
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category "Covalent chemical modification"
_pdbx_chem_comp_pcm.position "Amino-acid side chain"
_pdbx_chem_comp_pcm.polypeptide_position "Any position"
_pdbx_chem_comp_pcm.comp_id_linking_atom C13
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#