data_YCW # _chem_comp.id YCW _chem_comp.name "[(3aR,3bR,6aS,6bS)-5-(1H-benzotriazole-5-carbonyl)octahydrocyclobuta[1,2-c:3,4-c']dipyrrol-2(1H)-yl][4-(cyclopropylmethoxy)naphthalen-2-yl]methanone" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C30 H29 N5 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-13 _chem_comp.pdbx_modified_date 2024-12-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 507.583 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YCW _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7G5F _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YCW C02 C1 C 0 1 N N N N N N -14.243 10.923 49.526 0.263 2.268 -1.752 C02 YCW 1 YCW C04 C2 C 0 1 N N R N N N -11.783 11.080 49.771 -0.472 0.501 -0.239 C04 YCW 2 YCW C05 C3 C 0 1 N N N N N N -12.120 9.962 48.786 1.051 0.426 -0.442 C05 YCW 3 YCW C06 C4 C 0 1 N N S N N N -12.714 13.048 49.615 -1.909 2.059 -0.398 C06 YCW 4 YCW C07 C5 C 0 1 N N R N N N -11.374 12.434 49.127 -0.915 1.625 0.707 C07 YCW 5 YCW N09 N1 N 0 1 N N N N N N -10.998 13.612 51.110 -3.075 0.687 1.234 N09 YCW 6 YCW C10 C6 C 0 1 N N N N N N -10.272 13.151 49.905 -1.827 1.149 1.852 C10 YCW 7 YCW C15 C7 C 0 1 N N N N N N -14.248 9.302 47.576 2.699 2.148 -1.203 C15 YCW 8 YCW C17 C8 C 0 1 N N N N N N -10.616 13.612 52.451 -3.988 -0.112 1.823 C17 YCW 9 YCW C18 C9 C 0 1 Y N N N N N -9.268 13.258 52.946 -5.256 -0.420 1.131 C18 YCW 10 YCW C20 C10 C 0 1 Y N N N N N -9.082 11.932 53.427 -5.772 -1.723 1.166 C20 YCW 11 YCW C21 C11 C 0 1 Y N N N N N -7.865 11.505 53.922 -6.941 -2.021 0.532 C21 YCW 12 YCW C22 C12 C 0 1 Y N N N N N -8.212 14.181 52.989 -5.936 0.584 0.453 C22 YCW 13 YCW C23 C13 C 0 1 Y N N N N N -6.961 13.769 53.489 -7.135 0.286 -0.200 C23 YCW 14 YCW C24 C14 C 0 1 Y N N N N N -6.823 12.468 53.937 -7.635 -1.030 -0.158 C24 YCW 15 YCW C28 C15 C 0 1 Y N N N N N -13.488 8.860 46.404 3.824 1.381 -0.627 C28 YCW 16 YCW C03 C16 C 0 1 N N S N N N -13.127 11.687 50.245 -0.955 1.396 -1.406 C03 YCW 17 YCW C08 C17 C 0 1 N N N N N N -12.319 14.092 50.651 -3.175 1.229 -0.125 C08 YCW 18 YCW C29 C18 C 0 1 Y N N N N N -13.301 7.471 46.169 3.766 -0.023 -0.595 C29 YCW 19 YCW C30 C19 C 0 1 Y N N N N N -12.587 7.073 45.061 4.791 -0.751 -0.068 C30 YCW 20 YCW C31 C20 C 0 1 Y N N N N N -12.945 9.783 45.527 4.929 2.052 -0.128 C31 YCW 21 YCW C32 C21 C 0 1 Y N N N N N -12.214 9.365 44.390 5.994 1.321 0.418 C32 YCW 22 YCW C33 C22 C 0 1 Y N N N N N -12.036 7.992 44.152 5.926 -0.094 0.452 C33 YCW 23 YCW C34 C23 C 0 1 Y N N N N N -11.311 7.534 43.029 6.995 -0.821 1.000 C34 YCW 24 YCW C35 C24 C 0 1 Y N N N N N -10.772 8.434 42.152 8.078 -0.160 1.495 C35 YCW 25 YCW C36 C25 C 0 1 Y N N N N N -10.951 9.817 42.382 8.143 1.232 1.467 C36 YCW 26 YCW C37 C26 C 0 1 Y N N N N N -11.652 10.277 43.469 7.131 1.970 0.933 C37 YCW 27 YCW C39 C27 C 0 1 N N N N N N -12.911 4.814 45.611 3.540 -2.704 -0.588 C39 YCW 28 YCW C40 C28 C 0 1 N N N N N N -12.924 3.528 44.804 3.641 -4.227 -0.475 C40 YCW 29 YCW C41 C29 C 0 1 N N N N N N -11.577 2.956 44.488 2.421 -5.049 -0.897 C41 YCW 30 YCW C42 C30 C 0 1 N N N N N N -12.481 2.273 45.484 3.674 -5.032 -1.775 C42 YCW 31 YCW N01 N2 N 0 1 N N N N N N -13.584 10.021 48.559 1.446 1.657 -1.138 N01 YCW 32 YCW N25 N3 N 0 1 Y N N N N N -5.486 12.383 54.375 -8.804 -1.015 -0.877 N25 YCW 33 YCW N26 N4 N 0 1 Y N N N N N -4.908 13.594 54.168 -8.978 0.299 -1.336 N26 YCW 34 YCW N27 N5 N 0 1 Y N N N N N -5.773 14.448 53.647 -8.003 1.030 -0.925 N27 YCW 35 YCW O16 O1 O 0 1 N N N N N N -15.460 9.053 47.698 2.905 3.221 -1.735 O16 YCW 36 YCW O19 O2 O 0 1 N N N N N N -11.470 14.064 53.236 -3.767 -0.578 2.923 O19 YCW 37 YCW O38 O3 O 0 1 N N N N N N -12.357 5.770 44.730 4.720 -2.107 -0.045 O38 YCW 38 YCW H1 H1 H 0 1 N N N N N N -14.905 11.626 48.999 0.390 2.312 -2.833 H1 YCW 39 YCW H2 H2 H 0 1 N N N N N N -14.830 10.339 50.250 0.120 3.274 -1.356 H2 YCW 40 YCW H3 H3 H 0 1 N N N N N N -11.124 10.768 50.595 -0.966 -0.461 -0.102 H3 YCW 41 YCW H4 H4 H 0 1 N N N N N N -11.841 8.986 49.210 1.554 0.366 0.523 H4 YCW 42 YCW H5 H5 H 0 1 N N N N N N -11.583 10.117 47.839 1.304 -0.443 -1.049 H5 YCW 43 YCW H6 H6 H 0 1 N N N N N N -13.377 13.406 48.814 -2.076 3.130 -0.511 H6 YCW 44 YCW H7 H7 H 0 1 N N N N N N -11.243 12.409 48.035 -0.147 2.346 0.984 H7 YCW 45 YCW H8 H8 H 0 1 N N N N N N -9.456 12.462 50.169 -1.352 0.329 2.391 H8 YCW 46 YCW H9 H9 H 0 1 N N N N N N -9.866 13.999 49.334 -2.032 1.975 2.533 H9 YCW 47 YCW H10 H10 H 0 1 N N N N N N -9.913 11.242 53.405 -5.239 -2.497 1.699 H10 YCW 48 YCW H11 H11 H 0 1 N N N N N N -7.715 10.496 54.277 -7.330 -3.028 0.564 H11 YCW 49 YCW H12 H12 H 0 1 N N N N N N -8.356 15.194 52.643 -5.540 1.589 0.430 H12 YCW 50 YCW H13 H13 H 0 1 N N N N N N -13.238 11.721 51.339 -1.413 0.887 -2.254 H13 YCW 51 YCW H14 H14 H 0 1 N N N N N N -12.242 15.091 50.198 -4.057 1.864 -0.205 H14 YCW 52 YCW H15 H15 H 0 1 N N N N N N -13.041 14.120 51.481 -3.242 0.412 -0.844 H15 YCW 53 YCW H16 H16 H 0 1 N N N N N N -13.712 6.739 46.849 2.899 -0.530 -0.991 H16 YCW 54 YCW H17 H17 H 0 1 N N N N N N -13.081 10.838 45.713 4.969 3.131 -0.160 H17 YCW 55 YCW H18 H18 H 0 1 N N N N N N -11.183 6.474 42.864 6.959 -1.900 1.029 H18 YCW 56 YCW H19 H19 H 0 1 N N N N N N -10.215 8.092 41.292 8.898 -0.722 1.916 H19 YCW 57 YCW H20 H20 H 0 1 N N N N N N -10.527 10.527 41.688 9.013 1.732 1.867 H20 YCW 58 YCW H21 H21 H 0 1 N N N N N N -11.774 11.339 43.621 7.197 3.047 0.913 H21 YCW 59 YCW H22 H22 H 0 1 N N N N N N -12.287 4.704 46.510 3.442 -2.424 -1.637 H22 YCW 60 YCW H23 H23 H 0 1 N N N N N N -13.931 5.100 45.906 2.668 -2.355 -0.035 H23 YCW 61 YCW H24 H24 H 0 1 N N N N N N -13.703 3.435 44.033 4.232 -4.597 0.362 H24 YCW 62 YCW H25 H25 H 0 1 N N N N N N -11.390 2.495 43.507 2.211 -5.960 -0.338 H25 YCW 63 YCW H26 H26 H 0 1 N N N N N N -10.666 3.469 44.831 1.547 -4.504 -1.255 H26 YCW 64 YCW H27 H27 H 0 1 N N N N N N -12.230 2.286 46.555 3.624 -4.477 -2.712 H27 YCW 65 YCW H28 H28 H 0 1 N N N N N N -12.954 1.313 45.230 4.287 -5.932 -1.794 H28 YCW 66 YCW H29 H29 H 0 1 N N N N N N -5.043 11.577 54.767 -9.395 -1.767 -1.036 H29 YCW 67 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YCW N01 C02 SING N N 1 YCW N01 C05 SING N N 2 YCW N01 C15 SING N N 3 YCW C02 C03 SING N N 4 YCW C03 C04 SING N N 5 YCW C03 C06 SING N N 6 YCW C04 C05 SING N N 7 YCW C04 C07 SING N N 8 YCW C06 C07 SING N N 9 YCW C06 C08 SING N N 10 YCW C07 C10 SING N N 11 YCW C08 N09 SING N N 12 YCW N09 C10 SING N N 13 YCW N09 C17 SING N N 14 YCW C15 O16 DOUB N N 15 YCW C15 C28 SING N N 16 YCW C17 C18 SING N N 17 YCW C17 O19 DOUB N N 18 YCW C18 C20 DOUB Y N 19 YCW C18 C22 SING Y N 20 YCW C20 C21 SING Y N 21 YCW C21 C24 DOUB Y N 22 YCW C22 C23 DOUB Y N 23 YCW C23 C24 SING Y N 24 YCW C23 N27 SING Y N 25 YCW C24 N25 SING Y N 26 YCW N25 N26 SING Y N 27 YCW N26 N27 DOUB Y N 28 YCW C28 C29 DOUB Y N 29 YCW C28 C31 SING Y N 30 YCW C29 C30 SING Y N 31 YCW C30 C33 DOUB Y N 32 YCW C30 O38 SING N N 33 YCW C31 C32 DOUB Y N 34 YCW C32 C33 SING Y N 35 YCW C32 C37 SING Y N 36 YCW C33 C34 SING Y N 37 YCW C34 C35 DOUB Y N 38 YCW C35 C36 SING Y N 39 YCW C36 C37 DOUB Y N 40 YCW O38 C39 SING N N 41 YCW C39 C40 SING N N 42 YCW C40 C41 SING N N 43 YCW C40 C42 SING N N 44 YCW C41 C42 SING N N 45 YCW C02 H1 SING N N 46 YCW C02 H2 SING N N 47 YCW C04 H3 SING N N 48 YCW C05 H4 SING N N 49 YCW C05 H5 SING N N 50 YCW C06 H6 SING N N 51 YCW C07 H7 SING N N 52 YCW C10 H8 SING N N 53 YCW C10 H9 SING N N 54 YCW C20 H10 SING N N 55 YCW C21 H11 SING N N 56 YCW C22 H12 SING N N 57 YCW C03 H13 SING N N 58 YCW C08 H14 SING N N 59 YCW C08 H15 SING N N 60 YCW C29 H16 SING N N 61 YCW C31 H17 SING N N 62 YCW C34 H18 SING N N 63 YCW C35 H19 SING N N 64 YCW C36 H20 SING N N 65 YCW C37 H21 SING N N 66 YCW C39 H22 SING N N 67 YCW C39 H23 SING N N 68 YCW C40 H24 SING N N 69 YCW C41 H25 SING N N 70 YCW C41 H26 SING N N 71 YCW C42 H27 SING N N 72 YCW C42 H28 SING N N 73 YCW N25 H29 SING N N 74 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YCW SMILES ACDLabs 12.01 "O=C(c1cc2ccccc2c(OCC2CC2)c1)N1CC2C(C1)C1CN(CC21)C(=O)c1cc2nn[NH]c2cc1" YCW InChI InChI 1.06 "InChI=1S/C30H29N5O3/c36-29(19-7-8-26-27(10-19)32-33-31-26)34-12-22-23(13-34)25-15-35(14-24(22)25)30(37)20-9-18-3-1-2-4-21(18)28(11-20)38-16-17-5-6-17/h1-4,7-11,17,22-25H,5-6,12-16H2,(H,31,32,33)/t22-,23+,24+,25-" YCW InChIKey InChI 1.06 KXLCIXWJASBLBZ-UCDDGIFISA-N YCW SMILES_CANONICAL CACTVS 3.385 "O=C(N1C[C@@H]2[C@H](C1)[C@H]3CN(C[C@@H]23)C(=O)c4cc(OCC5CC5)c6ccccc6c4)c7ccc8[nH]nnc8c7" YCW SMILES CACTVS 3.385 "O=C(N1C[CH]2[CH](C1)[CH]3CN(C[CH]23)C(=O)c4cc(OCC5CC5)c6ccccc6c4)c7ccc8[nH]nnc8c7" YCW SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)cc(cc2OCC3CC3)C(=O)N4C[C@H]5[C@@H]6CN(C[C@@H]6[C@H]5C4)C(=O)c7ccc8c(c7)nn[nH]8" YCW SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)cc(cc2OCC3CC3)C(=O)N4CC5C6CN(CC6C5C4)C(=O)c7ccc8c(c7)nn[nH]8" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YCW "SYSTEMATIC NAME" ACDLabs 12.01 "[(3aR,3bR,6aS,6bS)-5-(1H-benzotriazole-5-carbonyl)octahydrocyclobuta[1,2-c:3,4-c']dipyrrol-2(1H)-yl][4-(cyclopropylmethoxy)naphthalen-2-yl]methanone" YCW "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1~{H}-benzotriazol-5-yl-[(1~{R},2~{R},6~{S},7~{S})-9-[4-(cyclopropylmethoxy)naphthalen-2-yl]carbonyl-4,9-diazatricyclo[5.3.0.0^{2,6}]decan-4-yl]methanone" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YCW "Create component" 2023-06-13 RCSB YCW "Initial release" 2024-12-18 RCSB #