data_YD1 # _chem_comp.id YD1 _chem_comp.name "6-[4-(3,4-dichlorophenyl)piperazin-1-yl]carbonyl-1~{H}-pyrimidine-2,4-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H14 Cl2 N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-02-22 _chem_comp.pdbx_modified_date 2021-02-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 369.203 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YD1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7LTJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YD1 C1 C1 C 0 1 N N N 60.321 -1.623 104.921 -3.888 0.503 -0.205 C1 YD1 1 YD1 C2 C2 C 0 1 N N N 59.823 -0.449 105.710 -2.815 1.523 -0.113 C2 YD1 2 YD1 C5 C3 C 0 1 N N N 57.783 -1.739 106.399 -0.651 2.279 0.760 C5 YD1 3 YD1 C6 C4 C 0 1 N N N 56.387 -1.364 105.927 0.702 1.715 0.315 C6 YD1 4 YD1 C8 C5 C 0 1 N N N 56.732 0.919 106.706 -0.047 -0.566 0.659 C8 YD1 5 YD1 C9 C6 C 0 1 N N N 58.142 0.564 107.151 -1.440 -0.093 1.118 C9 YD1 6 YD1 C12 C7 C 0 1 Y N N 52.505 1.100 107.597 3.965 -1.660 1.078 C12 YD1 7 YD1 C14 C8 C 0 1 Y N N 52.284 -0.487 105.813 4.380 0.257 -0.304 C14 YD1 8 YD1 C10 C9 C 0 1 Y N N 54.484 -0.026 106.735 2.248 -0.016 0.761 C10 YD1 9 YD1 C11 C10 C 0 1 Y N N 53.875 0.886 107.621 2.686 -1.204 1.331 C11 YD1 10 YD1 C13 C11 C 0 1 Y N N 51.697 0.420 106.701 4.812 -0.932 0.262 C13 YD1 11 YD1 C16 C12 C 0 1 Y N N 53.655 -0.712 105.826 3.102 0.717 -0.054 C16 YD1 12 YD1 C19 C13 C 0 1 N N N 61.548 -3.703 105.175 -4.929 -1.258 -1.403 C19 YD1 13 YD1 C22 C14 C 0 1 N N N 60.653 -3.012 102.961 -5.857 -0.633 0.650 C22 YD1 14 YD1 C24 C15 C 0 1 N N N 60.119 -1.822 103.599 -4.809 0.386 0.787 C24 YD1 15 YD1 N18 N1 N 0 1 N N N 61.005 -2.543 105.680 -3.964 -0.329 -1.301 N18 YD1 16 YD1 N21 N2 N 0 1 N N N 61.336 -3.872 103.819 -5.861 -1.418 -0.447 N21 YD1 17 YD1 N4 N3 N 0 1 N N N 58.659 -0.558 106.367 -1.681 1.247 0.561 N4 YD1 18 YD1 N7 N4 N 0 1 N N N 55.863 -0.256 106.752 0.954 0.448 1.015 N7 YD1 19 YD1 O20 O1 O 0 1 N N N 62.161 -4.502 105.864 -4.961 -1.972 -2.387 O20 YD1 20 YD1 O23 O2 O 0 1 N N N 60.535 -3.292 101.772 -6.702 -0.772 1.514 O23 YD1 21 YD1 O3 O3 O 0 1 N N N 60.528 0.573 105.713 -2.958 2.606 -0.644 O3 YD1 22 YD1 CL15 CL1 CL 0 0 N N N 51.292 -1.363 104.658 5.449 1.171 -1.321 CL15 YD1 23 YD1 CL17 CL2 CL 0 0 N N N 49.974 0.717 106.701 6.419 -1.508 -0.053 CL17 YD1 24 YD1 H1 H1 H 0 1 N N N 57.728 -2.124 107.428 -0.605 2.552 1.815 H1 YD1 25 YD1 H2 H2 H 0 1 N N N 58.195 -2.516 105.738 -0.895 3.159 0.165 H2 YD1 26 YD1 H3 H3 H 0 1 N N N 56.430 -1.048 104.874 0.687 1.539 -0.760 H3 YD1 27 YD1 H4 H4 H 0 1 N N N 55.723 -2.236 106.021 1.491 2.427 0.557 H4 YD1 28 YD1 H5 H5 H 0 1 N N N 56.765 1.304 105.676 0.198 -1.508 1.150 H5 YD1 29 YD1 H6 H6 H 0 1 N N N 56.327 1.694 107.374 -0.052 -0.710 -0.421 H6 YD1 30 YD1 H7 H7 H 0 1 N N N 58.127 0.286 108.215 -2.200 -0.785 0.756 H7 YD1 31 YD1 H8 H8 H 0 1 N N N 58.797 1.437 107.010 -1.471 -0.050 2.207 H8 YD1 32 YD1 H9 H9 H 0 1 N N N 52.063 1.805 108.285 4.306 -2.584 1.522 H9 YD1 33 YD1 H10 H10 H 0 1 N N N 54.485 1.427 108.330 2.027 -1.771 1.972 H10 YD1 34 YD1 H11 H11 H 0 1 N N N 54.089 -1.418 105.134 2.765 1.644 -0.495 H11 YD1 35 YD1 H12 H12 H 0 1 N N N 59.563 -1.099 103.020 -4.771 1.026 1.656 H12 YD1 36 YD1 H13 H13 H 0 1 N N N 61.115 -2.359 106.657 -3.309 -0.242 -2.011 H13 YD1 37 YD1 H14 H14 H 0 1 N N N 61.714 -4.702 103.409 -6.547 -2.096 -0.552 H14 YD1 38 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YD1 O23 C22 DOUB N N 1 YD1 C22 C24 SING N N 2 YD1 C22 N21 SING N N 3 YD1 C24 C1 DOUB N N 4 YD1 N21 C19 SING N N 5 YD1 CL15 C14 SING N N 6 YD1 C1 N18 SING N N 7 YD1 C1 C2 SING N N 8 YD1 C19 N18 SING N N 9 YD1 C19 O20 DOUB N N 10 YD1 C2 O3 DOUB N N 11 YD1 C2 N4 SING N N 12 YD1 C14 C16 DOUB Y N 13 YD1 C14 C13 SING Y N 14 YD1 C16 C10 SING Y N 15 YD1 C6 C5 SING N N 16 YD1 C6 N7 SING N N 17 YD1 N4 C5 SING N N 18 YD1 N4 C9 SING N N 19 YD1 C13 CL17 SING N N 20 YD1 C13 C12 DOUB Y N 21 YD1 C8 N7 SING N N 22 YD1 C8 C9 SING N N 23 YD1 C10 N7 SING N N 24 YD1 C10 C11 DOUB Y N 25 YD1 C12 C11 SING Y N 26 YD1 C5 H1 SING N N 27 YD1 C5 H2 SING N N 28 YD1 C6 H3 SING N N 29 YD1 C6 H4 SING N N 30 YD1 C8 H5 SING N N 31 YD1 C8 H6 SING N N 32 YD1 C9 H7 SING N N 33 YD1 C9 H8 SING N N 34 YD1 C12 H9 SING N N 35 YD1 C11 H10 SING N N 36 YD1 C16 H11 SING N N 37 YD1 C24 H12 SING N N 38 YD1 N18 H13 SING N N 39 YD1 N21 H14 SING N N 40 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YD1 InChI InChI 1.03 "InChI=1S/C15H14Cl2N4O3/c16-10-2-1-9(7-11(10)17)20-3-5-21(6-4-20)14(23)12-8-13(22)19-15(24)18-12/h1-2,7-8H,3-6H2,(H2,18,19,22,24)" YD1 InChIKey InChI 1.03 XREZIAMDGRLMGZ-UHFFFAOYSA-N YD1 SMILES_CANONICAL CACTVS 3.385 "Clc1ccc(cc1Cl)N2CCN(CC2)C(=O)C3=CC(=O)NC(=O)N3" YD1 SMILES CACTVS 3.385 "Clc1ccc(cc1Cl)N2CCN(CC2)C(=O)C3=CC(=O)NC(=O)N3" YD1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1N2CCN(CC2)C(=O)C3=CC(=O)NC(=O)N3)Cl)Cl" YD1 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1N2CCN(CC2)C(=O)C3=CC(=O)NC(=O)N3)Cl)Cl" # _pdbx_chem_comp_identifier.comp_id YD1 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "6-[4-(3,4-dichlorophenyl)piperazin-1-yl]carbonyl-1~{H}-pyrimidine-2,4-dione" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YD1 "Create component" 2021-02-22 RCSB YD1 "Initial release" 2021-03-03 RCSB ##