data_YD9
#
_chem_comp.id YD9
_chem_comp.name "(7S)-2-(3,5-difluoro-4-hydroxyanilino)-7-methyl-5-[(1,2-oxazol-5-yl)methyl]-8-(prop-2-yn-1-yl)-7,8-dihydropteridin-6(5H)-one"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C20 H16 F2 N6 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2023-12-01
_chem_comp.pdbx_modified_date 2024-08-30
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 426.376
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code YD9
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8V42
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YD9 C4 C1 C 0 1 Y N N N N N -30.202 0.789 46.023 -0.560 0.556 -0.689 C4 YD9 1
YD9 C14 C2 C 0 1 N N N N N N -30.112 3.016 50.317 -2.081 -3.640 0.846 C14 YD9 2
YD9 C5 C3 C 0 1 N N N N N N -31.416 -0.488 49.296 -3.967 -0.616 -0.319 C5 YD9 3
YD9 C6 C4 C 0 1 N N S N N N -31.138 0.712 50.174 -3.663 -1.844 0.498 C6 YD9 4
YD9 C11 C5 C 0 1 Y N N N N N -26.226 5.496 48.216 4.065 1.530 0.534 C11 YD9 5
YD9 C7 C6 C 0 1 Y N N N N N -27.383 4.567 46.357 3.208 -0.681 0.163 C7 YD9 6
YD9 C8 C7 C 0 1 Y N N N N N -26.445 5.124 45.497 4.459 -1.093 -0.278 C8 YD9 7
YD9 C9 C8 C 0 1 Y N N N N N -25.413 5.856 46.025 5.511 -0.196 -0.309 C9 YD9 8
YD9 C10 C9 C 0 1 Y N N N N N -25.275 6.062 47.386 5.316 1.117 0.098 C10 YD9 9
YD9 C12 C10 C 0 1 Y N N N N N -27.273 4.758 47.729 3.014 0.632 0.570 C12 YD9 10
YD9 C13 C11 C 0 1 N N N N N N -32.417 1.182 50.862 -3.471 -1.444 1.962 C13 YD9 11
YD9 N1 N1 N 0 1 Y N N N N N -29.458 2.833 47.653 -0.153 -2.007 0.092 N1 YD9 12
YD9 N2 N2 N 0 1 Y N N N N N -29.513 1.795 45.509 0.660 0.098 -0.438 N2 YD9 13
YD9 C3 C12 C 0 1 Y N N N N N -29.165 2.791 46.347 0.852 -1.155 -0.056 C3 YD9 14
YD9 N3 N3 N 0 1 N N N N N N -31.290 -0.322 47.944 -2.948 0.130 -0.789 N3 YD9 15
YD9 C1 C13 C 0 1 Y N N N N N -30.557 0.743 47.367 -1.635 -0.300 -0.546 C1 YD9 16
YD9 C2 C14 C 0 1 Y N N N N N -30.153 1.814 48.171 -1.401 -1.622 -0.149 C2 YD9 17
YD9 N4 N4 N 0 1 N N N N N N -30.460 1.849 49.507 -2.456 -2.505 -0.007 N4 YD9 18
YD9 N5 N5 N 0 1 N N N N N N -28.450 3.813 45.815 2.144 -1.590 0.199 N5 YD9 19
YD9 F1 F1 F 0 1 N N N N N N -26.119 5.681 49.551 3.876 2.808 0.930 F1 YD9 20
YD9 O1 O1 O 0 1 N N N N N N -24.257 6.784 47.888 6.352 1.999 0.067 O1 YD9 21
YD9 F2 F2 F 0 1 N N N N N N -24.497 6.397 45.190 6.728 -0.597 -0.738 F2 YD9 22
YD9 O2 O2 O 0 1 N N N N N N -31.769 -1.557 49.766 -5.116 -0.304 -0.552 O2 YD9 23
YD9 C15 C15 C 0 1 N N N N N N -28.762 2.942 50.865 -1.044 -4.439 0.172 C15 YD9 24
YD9 C16 C16 C 0 1 N N N N N N -27.669 2.899 51.297 -0.217 -5.076 -0.366 C16 YD9 25
YD9 C17 C17 C 0 1 N N N N N N -31.947 -1.309 47.081 -3.202 1.347 -1.563 C17 YD9 26
YD9 C18 C18 C 0 1 Y N N N N N -33.327 -0.889 46.723 -3.295 2.527 -0.630 C18 YD9 27
YD9 C19 C19 C 0 1 Y N N N N N -34.506 -1.004 47.341 -2.276 3.322 -0.225 C19 YD9 28
YD9 C20 C20 C 0 1 Y N N N N N -35.446 -0.454 46.543 -2.896 4.261 0.632 C20 YD9 29
YD9 N6 N6 N 0 1 Y N N N N N -34.899 0.003 45.421 -4.161 3.956 0.658 N6 YD9 30
YD9 O3 O3 O 0 1 Y N N N N N -33.521 -0.285 45.533 -4.403 2.999 -0.041 O3 YD9 31
YD9 H1 H1 H 0 1 N N N N N N -30.499 -0.024 45.377 -0.710 1.581 -0.995 H1 YD9 32
YD9 H2 H2 H 0 1 N N N N N N -30.187 3.915 49.688 -1.694 -3.270 1.795 H2 YD9 33
YD9 H3 H3 H 0 1 N N N N N N -30.826 3.091 51.150 -2.957 -4.262 1.029 H3 YD9 34
YD9 H4 H4 H 0 1 N N N N N N -30.466 0.365 50.973 -4.496 -2.544 0.422 H4 YD9 35
YD9 H5 H5 H 0 1 N N N N N N -26.527 4.983 44.429 4.610 -2.115 -0.595 H5 YD9 36
YD9 H6 H6 H 0 1 N N N N N N -28.002 4.331 48.402 2.041 0.952 0.914 H6 YD9 37
YD9 H7 H7 H 0 1 N N N N N N -32.194 2.054 51.495 -4.383 -0.975 2.333 H7 YD9 38
YD9 H8 H8 H 0 1 N N N N N N -33.161 1.461 50.101 -3.252 -2.331 2.556 H8 YD9 39
YD9 H9 H9 H 0 1 N N N N N N -32.818 0.369 51.486 -2.643 -0.740 2.041 H9 YD9 40
YD9 H10 H10 H 0 1 N N N N N N -28.721 4.076 44.889 2.310 -2.524 0.401 H10 YD9 41
YD9 H11 H11 H 0 1 N N N N N N -24.328 6.816 48.835 6.437 2.478 -0.768 H11 YD9 42
YD9 H12 H12 H 0 1 N N N N N N -26.684 2.860 51.686 0.522 -5.646 -0.847 H12 YD9 43
YD9 H13 H13 H 0 1 N N N N N N -31.993 -2.272 47.610 -2.387 1.506 -2.269 H13 YD9 44
YD9 H14 H14 H 0 1 N N N N N N -31.359 -1.425 46.159 -4.140 1.242 -2.109 H14 YD9 45
YD9 H15 H15 H 0 1 N N N N N N -34.677 -1.456 48.307 -1.233 3.255 -0.494 H15 YD9 46
YD9 H16 H16 H 0 1 N N N N N N -36.497 -0.394 46.783 -2.415 5.071 1.160 H16 YD9 47
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YD9 F2 C9 SING N N 1
YD9 N6 O3 SING Y N 2
YD9 N6 C20 DOUB Y N 3
YD9 C8 C9 DOUB Y N 4
YD9 C8 C7 SING Y N 5
YD9 N2 C4 DOUB Y N 6
YD9 N2 C3 SING Y N 7
YD9 O3 C18 SING Y N 8
YD9 N5 C3 SING N N 9
YD9 N5 C7 SING N N 10
YD9 C4 C1 SING Y N 11
YD9 C9 C10 SING Y N 12
YD9 C3 N1 DOUB Y N 13
YD9 C7 C12 DOUB Y N 14
YD9 C20 C19 SING Y N 15
YD9 C18 C17 SING N N 16
YD9 C18 C19 DOUB Y N 17
YD9 C17 N3 SING N N 18
YD9 C1 N3 SING N N 19
YD9 C1 C2 DOUB Y N 20
YD9 C10 O1 SING N N 21
YD9 C10 C11 DOUB Y N 22
YD9 N1 C2 SING Y N 23
YD9 C12 C11 SING Y N 24
YD9 N3 C5 SING N N 25
YD9 C2 N4 SING N N 26
YD9 C11 F1 SING N N 27
YD9 C5 O2 DOUB N N 28
YD9 C5 C6 SING N N 29
YD9 N4 C6 SING N N 30
YD9 N4 C14 SING N N 31
YD9 C6 C13 SING N N 32
YD9 C14 C15 SING N N 33
YD9 C15 C16 TRIP N N 34
YD9 C4 H1 SING N N 35
YD9 C14 H2 SING N N 36
YD9 C14 H3 SING N N 37
YD9 C6 H4 SING N N 38
YD9 C8 H5 SING N N 39
YD9 C12 H6 SING N N 40
YD9 C13 H7 SING N N 41
YD9 C13 H8 SING N N 42
YD9 C13 H9 SING N N 43
YD9 N5 H10 SING N N 44
YD9 O1 H11 SING N N 45
YD9 C16 H12 SING N N 46
YD9 C17 H13 SING N N 47
YD9 C17 H14 SING N N 48
YD9 C19 H15 SING N N 49
YD9 C20 H16 SING N N 50
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YD9 SMILES ACDLabs 12.01 "Fc1cc(cc(F)c1O)Nc1ncc2N(Cc3ccno3)C(=O)C(C)N(CC#C)c2n1"
YD9 InChI InChI 1.06 "InChI=1S/C20H16F2N6O3/c1-3-6-27-11(2)19(30)28(10-13-4-5-24-31-13)16-9-23-20(26-18(16)27)25-12-7-14(21)17(29)15(22)8-12/h1,4-5,7-9,11,29H,6,10H2,2H3,(H,23,25,26)/t11-/m0/s1"
YD9 InChIKey InChI 1.06 DFEBWFCZSQPYKA-NSHDSACASA-N
YD9 SMILES_CANONICAL CACTVS 3.385 "C[C@@H]1N(CC#C)c2nc(Nc3cc(F)c(O)c(F)c3)ncc2N(Cc4oncc4)C1=O"
YD9 SMILES CACTVS 3.385 "C[CH]1N(CC#C)c2nc(Nc3cc(F)c(O)c(F)c3)ncc2N(Cc4oncc4)C1=O"
YD9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1C(=O)N(c2cnc(nc2N1CC#C)Nc3cc(c(c(c3)F)O)F)Cc4ccno4"
YD9 SMILES "OpenEye OEToolkits" 2.0.7 "CC1C(=O)N(c2cnc(nc2N1CC#C)Nc3cc(c(c(c3)F)O)F)Cc4ccno4"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
YD9 "SYSTEMATIC NAME" ACDLabs 12.01 "(7S)-2-(3,5-difluoro-4-hydroxyanilino)-7-methyl-5-[(1,2-oxazol-5-yl)methyl]-8-(prop-2-yn-1-yl)-7,8-dihydropteridin-6(5H)-one"
YD9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(7~{S})-2-[[3,5-bis(fluoranyl)-4-oxidanyl-phenyl]amino]-7-methyl-5-(1,2-oxazol-5-ylmethyl)-8-prop-2-ynyl-7~{H}-pteridin-6-one"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YD9 "Create component" 2023-12-01 RCSB
YD9 "Initial release" 2024-09-04 RCSB
#