data_YDE # _chem_comp.id YDE _chem_comp.name "[(3aR,3bR,6aS,6bS)-5-(1H-benzotriazole-5-carbonyl)octahydrocyclobuta[1,2-c:3,4-c']dipyrrol-2(1H)-yl]{4-[(propan-2-yl)oxy]-7-(trifluoromethyl)quinolin-2-yl}methanone" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H27 F3 N6 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-13 _chem_comp.pdbx_modified_date 2024-12-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 564.558 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YDE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7G4Y _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YDE N1 N1 N 0 1 N N N N N N -14.015 9.075 48.162 0.634 -1.974 0.588 N1 YDE 1 YDE C2 C1 C 0 1 N N N N N N -14.673 9.791 49.279 -0.584 -2.778 0.741 C2 YDE 2 YDE C3 C2 C 0 1 N N S N N N -13.573 10.663 49.922 -1.762 -1.886 0.311 C3 YDE 3 YDE C4 C3 C 0 1 N N R N N N -12.238 10.000 49.459 -1.259 -0.450 0.602 C4 YDE 4 YDE C5 C4 C 0 1 N N N N N N -12.572 9.041 48.329 0.273 -0.555 0.517 C5 YDE 5 YDE C6 C5 C 0 1 N N S N N N -13.157 11.942 49.168 -1.743 -1.510 -1.176 C6 YDE 6 YDE C7 C6 C 0 1 N N R N N N -11.785 11.313 48.800 -1.913 -0.038 -0.728 C7 YDE 7 YDE C8 C7 C 0 1 N N N N N N -12.744 13.128 50.072 -3.058 -1.822 -1.912 C8 YDE 8 YDE N9 N2 N 0 1 N N N N N N -11.421 12.792 50.625 -4.084 -0.947 -1.332 N9 YDE 9 YDE C10 C8 C 0 1 N N N N N N -10.712 12.041 49.614 -3.435 0.158 -0.620 C10 YDE 10 YDE C15 C9 C 0 1 N N N N N N -14.619 8.465 47.129 1.888 -2.463 0.527 C15 YDE 11 YDE O16 O1 O 0 1 N N N N N N -15.836 8.517 47.079 2.078 -3.661 0.601 O16 YDE 12 YDE C17 C10 C 0 1 N N N N N N -10.963 13.143 51.865 -5.415 -1.130 -1.438 C17 YDE 13 YDE C18 C11 C 0 1 Y N N N N N -9.630 12.779 52.467 -6.344 -0.236 -0.717 C18 YDE 14 YDE O19 O2 O 0 1 N N N N N N -11.737 13.785 52.561 -5.852 -2.032 -2.128 O19 YDE 15 YDE C20 C12 C 0 1 Y N N N N N -9.437 11.456 52.857 -6.120 1.148 -0.715 C20 YDE 16 YDE C21 C13 C 0 1 Y N N N N N -8.277 11.011 53.428 -6.969 1.984 -0.053 C21 YDE 17 YDE C22 C14 C 0 1 Y N N N N N -8.601 13.704 52.723 -7.439 -0.770 -0.048 C22 YDE 18 YDE C23 C15 C 0 1 Y N N N N N -7.391 13.262 53.329 -8.313 0.082 0.632 C23 YDE 19 YDE C24 C16 C 0 1 Y N N N N N -7.238 11.896 53.686 -8.068 1.468 0.629 C24 YDE 20 YDE N25 N3 N 0 1 Y N N N N N -5.985 11.739 54.250 -9.077 2.034 1.368 N25 YDE 21 YDE N26 N4 N 0 1 Y N N N N N -5.420 13.010 54.222 -9.897 0.983 1.802 N26 YDE 22 YDE N27 N5 N 0 1 Y N N N N N -6.244 13.868 53.690 -9.437 -0.133 1.357 N27 YDE 23 YDE C28 C17 C 0 1 Y N N N N N -13.809 7.789 46.045 3.038 -1.539 0.370 C28 YDE 24 YDE N29 N6 N 0 1 Y N N N N N -13.609 6.489 46.066 2.814 -0.241 0.292 N29 YDE 25 YDE C30 C18 C 0 1 Y N N N N N -12.528 7.965 43.999 5.411 -1.210 0.170 C30 YDE 26 YDE C31 C19 C 0 1 Y N N N N N -13.273 8.575 45.005 4.334 -2.064 0.315 C31 YDE 27 YDE C32 C20 C 0 1 Y N N N N N -12.327 6.594 44.054 5.152 0.176 0.082 C32 YDE 28 YDE C33 C21 C 0 1 Y N N N N N -12.877 5.873 45.129 3.812 0.633 0.151 C33 YDE 29 YDE C34 C22 C 0 1 Y N N N N N -12.654 4.483 45.181 3.556 2.015 0.068 C34 YDE 30 YDE C35 C23 C 0 1 Y N N N N N -11.942 3.902 44.187 4.591 2.886 -0.076 C35 YDE 31 YDE C36 C24 C 0 1 Y N N N N N -11.392 4.623 43.128 5.908 2.433 -0.144 C36 YDE 32 YDE C37 C25 C 0 1 Y N N N N N -11.588 5.967 43.054 6.194 1.103 -0.067 C37 YDE 33 YDE O38 O3 O 0 1 N N N N N N -12.005 8.612 42.924 6.678 -1.689 0.109 O38 YDE 34 YDE C39 C26 C 0 1 N N N N N N -12.274 10.010 42.717 6.834 -3.109 0.080 C39 YDE 35 YDE C40 C27 C 0 1 N N N N N N -11.305 10.780 43.598 8.075 -3.469 -0.740 C40 YDE 36 YDE C41 C28 C 0 1 N N N N N N -12.092 10.403 41.241 6.997 -3.633 1.508 C41 YDE 37 YDE C42 C29 C 0 1 N N N N N N -11.724 2.421 44.251 4.310 4.364 -0.165 C42 YDE 38 YDE F43 F1 F 0 1 N N N N N N -10.379 2.225 44.548 4.324 4.919 1.119 F43 YDE 39 YDE F44 F2 F 0 1 N N N N N N -12.584 1.833 45.214 5.292 4.978 -0.949 F44 YDE 40 YDE F45 F3 F 0 1 N N N N N N -11.950 1.867 42.989 3.055 4.565 -0.748 F45 YDE 41 YDE H47 H1 H 0 1 N N N N N N -15.491 10.422 48.901 -0.532 -3.660 0.101 H47 YDE 42 YDE H46 H2 H 0 1 N N N N N N -15.072 9.074 50.012 -0.704 -3.079 1.782 H46 YDE 43 YDE H12 H3 H 0 1 N N N N N N -13.664 10.783 51.012 -2.727 -2.161 0.736 H12 YDE 44 YDE H11 H4 H 0 1 N N N N N N -11.593 9.610 50.261 -1.639 0.027 1.505 H11 YDE 45 YDE H48 H5 H 0 1 N N N N N N -12.245 8.023 48.587 0.725 -0.017 1.350 H48 YDE 46 YDE H49 H6 H 0 1 N N N N N N -12.076 9.362 47.401 0.619 -0.133 -0.427 H49 YDE 47 YDE H14 H7 H 0 1 N N N N N N -13.792 12.208 48.310 -0.829 -1.753 -1.719 H14 YDE 48 YDE H13 H8 H 0 1 N N N N N N -11.585 11.246 47.720 -1.380 0.714 -1.310 H13 YDE 49 YDE H51 H9 H 0 1 N N N N N N -12.685 14.054 49.481 -2.949 -1.614 -2.976 H51 YDE 50 YDE H50 H10 H 0 1 N N N N N N -13.474 13.258 50.885 -3.331 -2.867 -1.762 H50 YDE 51 YDE H52 H11 H 0 1 N N N N N N -10.031 11.316 50.084 -3.734 0.148 0.428 H52 YDE 52 YDE H53 H12 H 0 1 N N N N N N -10.136 12.719 48.967 -3.717 1.107 -1.075 H53 YDE 53 YDE H54 H13 H 0 1 N N N N N N -10.239 10.750 52.701 -5.269 1.554 -1.241 H54 YDE 54 YDE H55 H14 H 0 1 N N N N N N -8.168 9.966 53.680 -6.788 3.049 -0.056 H55 YDE 55 YDE H56 H15 H 0 1 N N N N N N -8.729 14.744 52.461 -7.613 -1.835 -0.055 H56 YDE 56 YDE H57 H16 H 0 1 N N N N N N -5.575 10.897 54.601 -9.199 2.978 1.555 H57 YDE 57 YDE H58 H17 H 0 1 N N N N N N -13.439 9.642 44.988 4.491 -3.130 0.387 H58 YDE 58 YDE H59 H18 H 0 1 N N N N N N -13.043 3.893 45.997 2.542 2.383 0.118 H59 YDE 59 YDE H60 H19 H 0 1 N N N N N N -10.813 4.117 42.370 6.711 3.145 -0.258 H60 YDE 60 YDE H61 H20 H 0 1 N N N N N N -11.178 6.538 42.234 7.219 0.765 -0.115 H61 YDE 61 YDE H62 H21 H 0 1 N N N N N N -13.304 10.247 43.023 5.954 -3.562 -0.376 H62 YDE 62 YDE H63 H22 H 0 1 N N N N N N -11.474 11.860 43.473 8.956 -3.016 -0.284 H63 YDE 63 YDE H65 H23 H 0 1 N N N N N N -11.467 10.503 44.650 8.194 -4.552 -0.762 H65 YDE 64 YDE H64 H24 H 0 1 N N N N N N -10.272 10.534 43.309 7.960 -3.096 -1.757 H64 YDE 65 YDE H66 H25 H 0 1 N N N N N N -12.305 11.475 41.118 7.116 -4.717 1.486 H66 YDE 66 YDE H68 H26 H 0 1 N N N N N N -11.057 10.197 40.932 7.877 -3.180 1.964 H68 YDE 67 YDE H67 H27 H 0 1 N N N N N N -12.784 9.818 40.618 6.113 -3.377 2.092 H67 YDE 68 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YDE N1 C2 SING N N 1 YDE N1 C5 SING N N 2 YDE N1 C15 SING N N 3 YDE C2 C3 SING N N 4 YDE C3 C4 SING N N 5 YDE C3 C6 SING N N 6 YDE C4 C5 SING N N 7 YDE C4 C7 SING N N 8 YDE C6 C7 SING N N 9 YDE C6 C8 SING N N 10 YDE C7 C10 SING N N 11 YDE C8 N9 SING N N 12 YDE N9 C10 SING N N 13 YDE N9 C17 SING N N 14 YDE C15 O16 DOUB N N 15 YDE C15 C28 SING N N 16 YDE C17 C18 SING N N 17 YDE C17 O19 DOUB N N 18 YDE C18 C20 DOUB Y N 19 YDE C18 C22 SING Y N 20 YDE C20 C21 SING Y N 21 YDE C21 C24 DOUB Y N 22 YDE C22 C23 DOUB Y N 23 YDE C23 C24 SING Y N 24 YDE C23 N27 SING Y N 25 YDE C24 N25 SING Y N 26 YDE N25 N26 SING Y N 27 YDE N26 N27 DOUB Y N 28 YDE C28 N29 DOUB Y N 29 YDE C28 C31 SING Y N 30 YDE N29 C33 SING Y N 31 YDE C30 C32 SING Y N 32 YDE C30 C31 DOUB Y N 33 YDE C30 O38 SING N N 34 YDE C32 C33 DOUB Y N 35 YDE C32 C37 SING Y N 36 YDE C33 C34 SING Y N 37 YDE C34 C35 DOUB Y N 38 YDE C35 C36 SING Y N 39 YDE C35 C42 SING N N 40 YDE C36 C37 DOUB Y N 41 YDE O38 C39 SING N N 42 YDE C39 C40 SING N N 43 YDE C39 C41 SING N N 44 YDE C42 F43 SING N N 45 YDE C42 F44 SING N N 46 YDE C42 F45 SING N N 47 YDE C2 H47 SING N N 48 YDE C2 H46 SING N N 49 YDE C3 H12 SING N N 50 YDE C4 H11 SING N N 51 YDE C5 H48 SING N N 52 YDE C5 H49 SING N N 53 YDE C6 H14 SING N N 54 YDE C7 H13 SING N N 55 YDE C8 H51 SING N N 56 YDE C8 H50 SING N N 57 YDE C10 H52 SING N N 58 YDE C10 H53 SING N N 59 YDE C20 H54 SING N N 60 YDE C21 H55 SING N N 61 YDE C22 H56 SING N N 62 YDE N25 H57 SING N N 63 YDE C31 H58 SING N N 64 YDE C34 H59 SING N N 65 YDE C36 H60 SING N N 66 YDE C37 H61 SING N N 67 YDE C39 H62 SING N N 68 YDE C40 H63 SING N N 69 YDE C40 H65 SING N N 70 YDE C40 H64 SING N N 71 YDE C41 H66 SING N N 72 YDE C41 H68 SING N N 73 YDE C41 H67 SING N N 74 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YDE SMILES ACDLabs 12.01 "CC(C)Oc1cc(nc2cc(ccc12)C(F)(F)F)C(=O)N1CC2C3CN(CC3C2C1)C(=O)c1cc2nn[NH]c2cc1" YDE InChI InChI 1.06 "InChI=1S/C29H27F3N6O3/c1-14(2)41-26-9-25(33-23-8-16(29(30,31)32)4-5-17(23)26)28(40)38-12-20-18-10-37(11-19(18)21(20)13-38)27(39)15-3-6-22-24(7-15)35-36-34-22/h3-9,14,18-21H,10-13H2,1-2H3,(H,34,35,36)" YDE InChIKey InChI 1.06 GVYBHYZYCAAHJJ-UHFFFAOYSA-N YDE SMILES_CANONICAL CACTVS 3.385 "CC(C)Oc1cc(nc2cc(ccc12)C(F)(F)F)C(=O)N3C[C@@H]4[C@H]5CN(C[C@H]5[C@@H]4C3)C(=O)c6ccc7[nH]nnc7c6" YDE SMILES CACTVS 3.385 "CC(C)Oc1cc(nc2cc(ccc12)C(F)(F)F)C(=O)N3C[CH]4[CH]5CN(C[CH]5[CH]4C3)C(=O)c6ccc7[nH]nnc7c6" YDE SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)Oc1cc(nc2c1ccc(c2)C(F)(F)F)C(=O)N3C[C@H]4[C@@H]5CN(C[C@@H]5[C@H]4C3)C(=O)c6ccc7c(c6)nn[nH]7" YDE SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)Oc1cc(nc2c1ccc(c2)C(F)(F)F)C(=O)N3CC4C5CN(CC5C4C3)C(=O)c6ccc7c(c6)nn[nH]7" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YDE "SYSTEMATIC NAME" ACDLabs 12.01 "[(3aR,3bR,6aS,6bS)-5-(1H-benzotriazole-5-carbonyl)octahydrocyclobuta[1,2-c:3,4-c']dipyrrol-2(1H)-yl]{4-[(propan-2-yl)oxy]-7-(trifluoromethyl)quinolin-2-yl}methanone" YDE "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1~{H}-benzotriazol-5-yl-[(1~{R},2~{S},6~{R},7~{S})-9-[4-propan-2-yloxy-7-(trifluoromethyl)quinolin-2-yl]carbonyl-4,9-diazatricyclo[5.3.0.0^{2,6}]decan-4-yl]methanone" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YDE "Create component" 2023-06-13 RCSB YDE "Initial release" 2024-12-18 RCSB #