data_YDN # _chem_comp.id YDN _chem_comp.name "1-[(3aR,6aS)-5-(1H-benzotriazole-5-carbonyl)hexahydropyrrolo[3,4-c]pyrrol-2(1H)-yl]-3-[4-(trifluoromethoxy)phenyl]propan-1-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H22 F3 N5 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-13 _chem_comp.pdbx_modified_date 2024-12-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 473.448 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YDN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7G5H _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YDN C02 C1 C 0 1 N N N N N N -14.411 10.742 49.613 -1.151 3.625 0.233 C02 YDN 1 YDN C04 C2 C 0 1 N N R N N N -12.013 10.925 49.885 -1.998 1.415 0.139 C04 YDN 2 YDN C05 C3 C 0 1 N N R N N N -13.330 11.247 50.601 -2.361 2.901 -0.264 C05 YDN 3 YDN C06 C4 C 0 1 N N N N N N -13.049 12.623 51.381 -3.774 2.980 0.216 C06 YDN 4 YDN C11 C5 C 0 1 N N N N N N -10.949 13.012 52.796 -5.616 1.242 0.133 C11 YDN 5 YDN C15 C6 C 0 1 Y N N N N N -8.121 11.163 54.212 -5.608 -2.286 -1.126 C15 YDN 6 YDN C16 C7 C 0 1 Y N N N N N -8.636 13.763 53.440 -7.113 -0.681 0.596 C16 YDN 7 YDN C17 C8 C 0 1 Y N N N N N -7.404 13.465 54.033 -7.472 -2.019 0.406 C17 YDN 8 YDN C18 C9 C 0 1 Y N N N N N -7.131 12.161 54.394 -6.710 -2.822 -0.463 C18 YDN 9 YDN C22 C10 C 0 1 N N N N N N -14.317 8.678 47.994 1.287 2.938 0.179 C22 YDN 10 YDN C23 C11 C 0 1 N N N N N N -13.427 7.749 47.161 2.314 1.870 -0.095 C23 YDN 11 YDN C25 C12 C 0 1 N N N N N N -14.155 6.791 46.248 3.713 2.425 0.181 C25 YDN 12 YDN C26 C13 C 0 1 Y N N N N N -13.146 5.979 45.510 4.740 1.357 -0.093 C26 YDN 13 YDN C27 C14 C 0 1 Y N N N N N -12.480 6.458 44.378 5.289 1.235 -1.356 C27 YDN 14 YDN C28 C15 C 0 1 Y N N N N N -11.567 5.598 43.787 6.231 0.257 -1.610 C28 YDN 15 YDN N01 N1 N 0 1 N N N N N N -13.702 9.711 48.683 -0.023 2.674 0.004 N01 YDN 16 YDN C03 C16 C 0 1 N N N N N N -12.199 9.935 48.675 -0.607 1.375 -0.457 C03 YDN 17 YDN N07 N2 N 0 1 N N N N N N -11.565 12.363 51.749 -4.330 1.615 -0.025 N07 YDN 18 YDN C08 C17 C 0 1 N N N N N N -10.815 11.350 50.839 -3.205 0.736 -0.474 C08 YDN 19 YDN C12 C18 C 0 1 Y N N N N N -9.592 12.763 53.300 -6.005 -0.169 -0.067 C12 YDN 20 YDN O13 O1 O 0 1 N N N N N N -11.710 13.742 53.391 -6.455 2.066 0.441 O13 YDN 21 YDN C14 C19 C 0 1 Y N N N N N -9.357 11.481 53.712 -5.260 -0.983 -0.933 C14 YDN 22 YDN N19 N3 N 0 1 Y N N N N N -5.879 12.104 54.941 -7.295 -4.063 -0.444 N19 YDN 23 YDN N20 N4 N 0 1 Y N N N N N -5.388 13.371 54.870 -8.389 -3.980 0.429 N20 YDN 24 YDN N21 N5 N 0 1 Y N N N N N -6.303 14.198 54.293 -8.468 -2.788 0.906 N21 YDN 25 YDN O24 O2 O 0 1 N N N N N N -15.527 8.583 48.114 1.639 4.035 0.558 O24 YDN 26 YDN C29 C20 C 0 1 Y N N N N N -11.349 4.302 44.277 6.626 -0.604 -0.596 C29 YDN 27 YDN C30 C21 C 0 1 Y N N N N N -12.035 3.850 45.347 6.074 -0.479 0.670 C30 YDN 28 YDN C31 C22 C 0 1 Y N N N N N -12.907 4.694 45.976 5.137 0.504 0.920 C31 YDN 29 YDN O32 O3 O 0 1 N N N N N N -10.424 3.443 43.782 7.552 -1.567 -0.844 O32 YDN 30 YDN C33 C23 C 0 1 N N N N N N -10.752 2.631 42.781 7.911 -2.417 0.247 C33 YDN 31 YDN F34 F1 F 0 1 N N N N N N -11.121 3.341 41.746 6.776 -3.095 0.703 F34 YDN 32 YDN F35 F2 F 0 1 N N N N N N -9.744 1.885 42.434 8.869 -3.344 -0.179 F35 YDN 33 YDN F36 F3 F 0 1 N N N N N N -11.725 1.873 43.219 8.441 -1.644 1.286 F36 YDN 34 YDN H38 H1 H 0 1 N N N N N N -14.808 11.580 49.021 -0.997 4.542 -0.335 H38 YDN 35 YDN H37 H2 H 0 1 N N N N N N -15.233 10.259 50.161 -1.252 3.849 1.295 H37 YDN 36 YDN H09 H3 H 0 1 N N N N N N -11.993 11.839 49.274 -1.978 1.281 1.220 H09 YDN 37 YDN H10 H4 H 0 1 N N N N N N -13.366 10.508 51.415 -2.373 2.953 -1.353 H10 YDN 38 YDN H42 H5 H 0 1 N N N N N N -13.169 13.502 50.731 -3.802 3.220 1.279 H42 YDN 39 YDN H41 H6 H 0 1 N N N N N N -13.686 12.735 52.271 -4.329 3.724 -0.357 H41 YDN 40 YDN H46 H7 H 0 1 N N N N N N -7.898 10.138 54.471 -5.026 -2.907 -1.791 H46 YDN 41 YDN H47 H8 H 0 1 N N N N N N -8.843 14.764 53.093 -7.689 -0.053 1.259 H47 YDN 42 YDN H50 H9 H 0 1 N N N N N N -12.772 8.377 46.539 2.129 1.013 0.553 H50 YDN 43 YDN H49 H10 H 0 1 N N N N N N -12.815 7.155 47.855 2.246 1.559 -1.137 H49 YDN 44 YDN H51 H11 H 0 1 N N N N N N -14.800 6.129 46.844 3.898 3.282 -0.467 H51 YDN 45 YDN H52 H12 H 0 1 N N N N N N -14.771 7.356 45.533 3.782 2.736 1.223 H52 YDN 46 YDN H53 H13 H 0 1 N N N N N N -12.667 7.446 43.984 4.981 1.905 -2.145 H53 YDN 47 YDN H54 H14 H 0 1 N N N N N N -11.009 5.935 42.926 6.660 0.162 -2.597 H54 YDN 48 YDN H39 H15 H 0 1 N N N N N N -11.653 8.994 48.840 -0.041 0.532 -0.060 H39 YDN 49 YDN H40 H16 H 0 1 N N N N N N -11.867 10.391 47.730 -0.653 1.334 -1.545 H40 YDN 50 YDN H43 H17 H 0 1 N N N N N N -10.422 10.496 51.411 -3.132 0.725 -1.561 H43 YDN 51 YDN H44 H18 H 0 1 N N N N N N -9.995 11.827 50.282 -3.322 -0.274 -0.082 H44 YDN 52 YDN H45 H19 H 0 1 N N N N N N -10.132 10.732 53.645 -4.405 -0.574 -1.450 H45 YDN 53 YDN H48 H20 H 0 1 N N N N N N -5.420 11.298 55.315 -7.007 -4.846 -0.939 H48 YDN 54 YDN H55 H21 H 0 1 N N N N N N -11.898 2.839 45.701 6.380 -1.148 1.461 H55 YDN 55 YDN H56 H22 H 0 1 N N N N N N -13.424 4.351 46.860 4.710 0.604 1.907 H56 YDN 56 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YDN N01 C02 SING N N 1 YDN N01 C03 SING N N 2 YDN C03 C04 SING N N 3 YDN C02 C05 SING N N 4 YDN C04 C05 SING N N 5 YDN C05 C06 SING N N 6 YDN C06 N07 SING N N 7 YDN C04 C08 SING N N 8 YDN N07 C08 SING N N 9 YDN N07 C11 SING N N 10 YDN C11 C12 SING N N 11 YDN C11 O13 DOUB N N 12 YDN C12 C14 DOUB Y N 13 YDN C14 C15 SING Y N 14 YDN C12 C16 SING Y N 15 YDN C16 C17 DOUB Y N 16 YDN C15 C18 DOUB Y N 17 YDN C17 C18 SING Y N 18 YDN C18 N19 SING Y N 19 YDN N19 N20 SING Y N 20 YDN C17 N21 SING Y N 21 YDN N20 N21 DOUB Y N 22 YDN N01 C22 SING N N 23 YDN C22 C23 SING N N 24 YDN C22 O24 DOUB N N 25 YDN C23 C25 SING N N 26 YDN C25 C26 SING N N 27 YDN C26 C27 DOUB Y N 28 YDN C27 C28 SING Y N 29 YDN C28 C29 DOUB Y N 30 YDN C29 C30 SING Y N 31 YDN C26 C31 SING Y N 32 YDN C30 C31 DOUB Y N 33 YDN C29 O32 SING N N 34 YDN O32 C33 SING N N 35 YDN C33 F34 SING N N 36 YDN C33 F35 SING N N 37 YDN C33 F36 SING N N 38 YDN C02 H38 SING N N 39 YDN C02 H37 SING N N 40 YDN C04 H09 SING N N 41 YDN C05 H10 SING N N 42 YDN C06 H42 SING N N 43 YDN C06 H41 SING N N 44 YDN C15 H46 SING N N 45 YDN C16 H47 SING N N 46 YDN C23 H50 SING N N 47 YDN C23 H49 SING N N 48 YDN C25 H51 SING N N 49 YDN C25 H52 SING N N 50 YDN C27 H53 SING N N 51 YDN C28 H54 SING N N 52 YDN C03 H39 SING N N 53 YDN C03 H40 SING N N 54 YDN C08 H43 SING N N 55 YDN C08 H44 SING N N 56 YDN C14 H45 SING N N 57 YDN N19 H48 SING N N 58 YDN C30 H55 SING N N 59 YDN C31 H56 SING N N 60 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YDN SMILES ACDLabs 12.01 "FC(F)(F)Oc1ccc(cc1)CCC(=O)N1CC2CN(CC2C1)C(=O)c1cc2nn[NH]c2cc1" YDN InChI InChI 1.06 "InChI=1S/C23H22F3N5O3/c24-23(25,26)34-18-5-1-14(2-6-18)3-8-21(32)30-10-16-12-31(13-17(16)11-30)22(33)15-4-7-19-20(9-15)28-29-27-19/h1-2,4-7,9,16-17H,3,8,10-13H2,(H,27,28,29)" YDN InChIKey InChI 1.06 YVIMXMIOEDDRKU-UHFFFAOYSA-N YDN SMILES_CANONICAL CACTVS 3.385 "FC(F)(F)Oc1ccc(CCC(=O)N2C[C@@H]3CN(C[C@H]3C2)C(=O)c4ccc5[nH]nnc5c4)cc1" YDN SMILES CACTVS 3.385 "FC(F)(F)Oc1ccc(CCC(=O)N2C[CH]3CN(C[CH]3C2)C(=O)c4ccc5[nH]nnc5c4)cc1" YDN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1CCC(=O)N2C[C@@H]3CN(C[C@H]3C2)C(=O)c4ccc5c(c4)nn[nH]5)OC(F)(F)F" YDN SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1CCC(=O)N2CC3CN(CC3C2)C(=O)c4ccc5c(c4)nn[nH]5)OC(F)(F)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YDN "SYSTEMATIC NAME" ACDLabs 12.01 "1-[(3aR,6aS)-5-(1H-benzotriazole-5-carbonyl)hexahydropyrrolo[3,4-c]pyrrol-2(1H)-yl]-3-[4-(trifluoromethoxy)phenyl]propan-1-one" YDN "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1-[(3~{a}~{R},6~{a}~{R})-5-(1~{H}-benzotriazol-5-ylcarbonyl)-1,3,3~{a},4,6,6~{a}-hexahydropyrrolo[3,4-c]pyrrol-2-yl]-3-[4-(trifluoromethyloxy)phenyl]propan-1-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YDN "Create component" 2023-06-13 RCSB YDN "Initial release" 2024-12-18 RCSB #