data_YDT # _chem_comp.id YDT _chem_comp.name "N-[(5-fluoranyl-1-benzofuran-4-yl)methyl]-1,5-dimethyl-4-(1,4,6,7-tetrahydropyrazolo[4,3-c]pyridin-5-ylsulfonyl)pyrrole-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H22 F N5 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-12-03 _chem_comp.pdbx_modified_date 2024-10-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 471.505 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YDT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8R7B _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YDT C5 C1 C 0 1 N N N N N N 17.502 3.867 8.571 5.019 -0.444 -1.038 C5 YDT 1 YDT C6 C2 C 0 1 Y N N N N N 18.736 4.401 9.236 5.376 0.743 -0.176 C6 YDT 2 YDT C7 C3 C 0 1 Y N N N N N 20.000 4.013 9.099 6.416 0.856 0.741 C7 YDT 3 YDT N10 N1 N 0 1 Y N N N N N 19.954 5.758 10.512 5.286 2.742 0.693 N10 YDT 4 YDT C11 C4 C 0 1 Y N N N N N 18.748 5.482 10.120 4.692 1.916 -0.186 C11 YDT 5 YDT C12 C5 C 0 1 N N N N N N 17.504 6.187 10.466 3.485 2.195 -1.046 C12 YDT 6 YDT C15 C6 C 0 1 Y N N N N N 14.241 2.038 7.679 0.245 -0.858 -0.091 C15 YDT 7 YDT C16 C7 C 0 1 Y N N N N N 13.517 1.021 8.258 -0.084 -0.869 1.248 C16 YDT 8 YDT C18 C8 C 0 1 N N N N N N 12.146 0.681 10.385 1.142 -1.351 3.406 C18 YDT 9 YDT C19 C9 C 0 1 Y N N N N N 13.401 2.768 9.628 2.057 -1.423 1.070 C19 YDT 10 YDT C21 C10 C 0 1 N N N N N N 13.306 -0.313 7.712 -1.400 -0.562 1.820 C21 YDT 11 YDT C24 C11 C 0 1 N N N N N N 13.429 -1.971 5.900 -3.672 0.291 1.610 C24 YDT 12 YDT C30 C12 C 0 1 Y N N N N N 11.901 -1.149 2.512 -6.323 0.238 -1.124 C30 YDT 13 YDT C32 C13 C 0 1 Y N N N N N 9.908 -0.934 3.475 -6.637 -1.940 -0.844 C32 YDT 14 YDT C33 C14 C 0 1 Y N N N N N 10.712 -1.259 4.493 -5.696 -1.619 0.055 C33 YDT 15 YDT C34 C15 C 0 1 Y N N N N N 12.041 -1.413 3.887 -5.453 -0.180 -0.104 C34 YDT 16 YDT O1 O1 O 0 1 N N N N N N 15.252 4.560 6.772 1.650 -1.002 -2.733 O1 YDT 17 YDT S2 S1 S 0 1 N N N N N N 14.982 4.633 8.148 2.530 -1.348 -1.672 S2 YDT 18 YDT O3 O2 O 0 1 N N N N N N 14.059 5.625 8.563 3.211 -2.593 -1.603 O3 YDT 19 YDT N4 N2 N 0 1 N N N N N N 16.340 4.593 8.999 3.697 -0.174 -1.630 N4 YDT 20 YDT N8 N3 N 0 1 Y N N N N N 20.784 4.816 9.879 6.366 2.056 1.266 N8 YDT 21 YDT C13 C16 C 0 1 N N N N N N 16.354 5.212 10.264 3.438 1.165 -2.181 C13 YDT 22 YDT C14 C17 C 0 1 Y N N N N N 14.164 3.130 8.529 1.595 -1.209 -0.185 C14 YDT 23 YDT N17 N4 N 0 1 Y N N N N N 13.003 1.475 9.469 1.047 -1.219 1.950 N17 YDT 24 YDT C20 C18 C 0 1 N N N N N N 13.000 3.608 10.824 3.465 -1.822 1.430 C20 YDT 25 YDT O22 O3 O 0 1 N N N N N N 12.780 -1.125 8.418 -1.593 -0.706 3.013 O22 YDT 26 YDT N23 N5 N 0 1 N N N N N N 13.671 -0.637 6.471 -2.394 -0.121 1.024 N23 YDT 27 YDT C25 C19 C 0 1 Y N N N N N 13.280 -1.734 4.408 -4.605 0.738 0.514 C25 YDT 28 YDT C26 C20 C 0 1 Y N N N N N 14.374 -1.771 3.577 -4.627 2.059 0.117 C26 YDT 29 YDT F27 F1 F 0 1 N N N N N N 15.564 -2.077 4.123 -3.808 2.954 0.711 F27 YDT 30 YDT C28 C21 C 0 1 Y N N N N N 14.245 -1.513 2.204 -5.487 2.471 -0.893 C28 YDT 31 YDT C29 C22 C 0 1 Y N N N N N 13.011 -1.194 1.664 -6.329 1.572 -1.511 C29 YDT 32 YDT O31 O4 O 0 1 Y N N N N N 10.598 -0.879 2.317 -7.010 -0.849 -1.535 O31 YDT 33 YDT H1 H1 H 0 1 N N N N N N 17.381 2.806 8.833 5.761 -0.566 -1.827 H1 YDT 34 YDT H2 H2 H 0 1 N N N N N N 17.608 3.966 7.481 4.975 -1.346 -0.427 H2 YDT 35 YDT H3 H3 H 0 1 N N N N N N 20.348 3.201 8.477 7.138 0.088 0.979 H3 YDT 36 YDT H4 H4 H 0 1 N N N N N N 20.235 6.489 11.135 5.015 3.651 0.895 H4 YDT 37 YDT H5 H5 H 0 1 N N N N N N 17.538 6.515 11.515 2.580 2.114 -0.442 H5 YDT 38 YDT H6 H6 H 0 1 N N N N N N 17.374 7.062 9.812 3.558 3.199 -1.463 H6 YDT 39 YDT H7 H7 H 0 1 N N N N N N 14.770 1.994 6.739 -0.417 -0.627 -0.913 H7 YDT 40 YDT H8 H8 H 0 1 N N N N N N 11.887 1.289 11.265 0.974 -2.390 3.689 H8 YDT 41 YDT H9 H9 H 0 1 N N N N N N 11.226 0.384 9.861 2.134 -1.041 3.735 H9 YDT 42 YDT H10 H10 H 0 1 N N N N N N 12.690 -0.219 10.708 0.389 -0.720 3.878 H10 YDT 43 YDT H11 H11 H 0 1 N N N N N N 12.510 -2.410 6.316 -4.115 -0.549 2.144 H11 YDT 44 YDT H12 H12 H 0 1 N N N N N N 14.279 -2.639 6.103 -3.505 1.115 2.303 H12 YDT 45 YDT H13 H13 H 0 1 N N N N N N 8.849 -0.742 3.567 -7.043 -2.931 -0.986 H13 YDT 46 YDT H14 H14 H 0 1 N N N N N N 10.443 -1.381 5.532 -5.214 -2.285 0.755 H14 YDT 47 YDT H15 H15 H 0 1 N N N N N N 15.409 5.761 10.390 2.454 1.182 -2.649 H15 YDT 48 YDT H16 H16 H 0 1 N N N N N N 16.427 4.428 11.032 4.200 1.406 -2.923 H16 YDT 49 YDT H17 H17 H 0 1 N N N N N N 12.052 4.123 10.609 4.067 -0.927 1.589 H17 YDT 50 YDT H18 H18 H 0 1 N N N N N N 12.873 2.958 11.702 3.452 -2.418 2.342 H18 YDT 51 YDT H19 H19 H 0 1 N N N N N N 13.784 4.352 11.029 3.895 -2.409 0.618 H19 YDT 52 YDT H20 H20 H 0 1 N N N N N N 14.126 0.052 5.908 -2.264 -0.077 0.064 H20 YDT 53 YDT H21 H21 H 0 1 N N N N N N 15.114 -1.564 1.564 -5.497 3.508 -1.197 H21 YDT 54 YDT H22 H22 H 0 1 N N N N N N 12.908 -0.984 0.610 -6.994 1.904 -2.295 H22 YDT 55 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YDT C29 C28 DOUB Y N 1 YDT C29 C30 SING Y N 2 YDT C28 C26 SING Y N 3 YDT O31 C30 SING Y N 4 YDT O31 C32 SING Y N 5 YDT C30 C34 DOUB Y N 6 YDT C32 C33 DOUB Y N 7 YDT C26 F27 SING N N 8 YDT C26 C25 DOUB Y N 9 YDT C34 C25 SING Y N 10 YDT C34 C33 SING Y N 11 YDT C25 C24 SING N N 12 YDT C24 N23 SING N N 13 YDT N23 C21 SING N N 14 YDT O1 S2 DOUB N N 15 YDT C15 C16 DOUB Y N 16 YDT C15 C14 SING Y N 17 YDT C21 C16 SING N N 18 YDT C21 O22 DOUB N N 19 YDT S2 C14 SING N N 20 YDT S2 O3 DOUB N N 21 YDT S2 N4 SING N N 22 YDT C16 N17 SING Y N 23 YDT C14 C19 DOUB Y N 24 YDT C5 N4 SING N N 25 YDT C5 C6 SING N N 26 YDT N4 C13 SING N N 27 YDT C7 C6 SING Y N 28 YDT C7 N8 DOUB Y N 29 YDT C6 C11 DOUB Y N 30 YDT N17 C19 SING Y N 31 YDT N17 C18 SING N N 32 YDT C19 C20 SING N N 33 YDT N8 N10 SING Y N 34 YDT C11 C12 SING N N 35 YDT C11 N10 SING Y N 36 YDT C13 C12 SING N N 37 YDT C5 H1 SING N N 38 YDT C5 H2 SING N N 39 YDT C7 H3 SING N N 40 YDT N10 H4 SING N N 41 YDT C12 H5 SING N N 42 YDT C12 H6 SING N N 43 YDT C15 H7 SING N N 44 YDT C18 H8 SING N N 45 YDT C18 H9 SING N N 46 YDT C18 H10 SING N N 47 YDT C24 H11 SING N N 48 YDT C24 H12 SING N N 49 YDT C32 H13 SING N N 50 YDT C33 H14 SING N N 51 YDT C13 H15 SING N N 52 YDT C13 H16 SING N N 53 YDT C20 H17 SING N N 54 YDT C20 H18 SING N N 55 YDT C20 H19 SING N N 56 YDT N23 H20 SING N N 57 YDT C28 H21 SING N N 58 YDT C29 H22 SING N N 59 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YDT InChI InChI 1.06 "InChI=1S/C22H22FN5O4S/c1-13-21(33(30,31)28-7-5-18-14(12-28)10-25-26-18)9-19(27(13)2)22(29)24-11-16-15-6-8-32-20(15)4-3-17(16)23/h3-4,6,8-10H,5,7,11-12H2,1-2H3,(H,24,29)(H,25,26)" YDT InChIKey InChI 1.06 YVXDXTXKLFZFOI-UHFFFAOYSA-N YDT SMILES_CANONICAL CACTVS 3.385 "Cn1c(C)c(cc1C(=O)NCc2c(F)ccc3occc23)[S](=O)(=O)N4CCc5[nH]ncc5C4" YDT SMILES CACTVS 3.385 "Cn1c(C)c(cc1C(=O)NCc2c(F)ccc3occc23)[S](=O)(=O)N4CCc5[nH]ncc5C4" YDT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(cc(n1C)C(=O)NCc2c3ccoc3ccc2F)S(=O)(=O)N4CCc5c(cn[nH]5)C4" YDT SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(cc(n1C)C(=O)NCc2c3ccoc3ccc2F)S(=O)(=O)N4CCc5c(cn[nH]5)C4" # _pdbx_chem_comp_identifier.comp_id YDT _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[(5-fluoranyl-1-benzofuran-4-yl)methyl]-1,5-dimethyl-4-(1,4,6,7-tetrahydropyrazolo[4,3-c]pyridin-5-ylsulfonyl)pyrrole-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YDT "Create component" 2023-12-03 PDBE YDT "Initial release" 2024-10-23 RCSB #