data_YDU # _chem_comp.id YDU _chem_comp.name "2-cyclopentyl-N-(3-methyl-1,2,4-oxadiazol-5-yl)acetamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H15 N3 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-01-26 _chem_comp.pdbx_modified_date 2023-02-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 209.245 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YDU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7FSU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YDU C10 C1 C 0 1 N N N -4.096 -8.735 -7.963 2.763 0.171 -0.524 C10 YDU 1 YDU C13 C2 C 0 1 N N N -4.071 -9.730 -10.186 5.032 0.174 0.452 C13 YDU 2 YDU C01 C3 C 0 1 N N N -3.232 -1.024 -5.049 -5.586 -0.001 0.325 C01 YDU 3 YDU C02 C4 C 0 1 Y N N -3.436 -2.525 -5.124 -4.093 -0.074 0.135 C02 YDU 4 YDU C05 C5 C 0 1 Y N N -4.023 -4.517 -5.799 -2.029 0.408 0.081 C05 YDU 5 YDU C07 C6 C 0 1 N N N -4.435 -6.992 -6.144 0.320 0.411 -0.173 C07 YDU 6 YDU C09 C7 C 0 1 N N N -5.105 -8.040 -7.040 1.649 1.114 -0.064 C09 YDU 7 YDU C11 C8 C 0 1 N N N -3.387 -7.797 -8.688 2.914 -0.996 0.473 C11 YDU 8 YDU C12 C9 C 0 1 N N N -2.995 -8.552 -10.037 4.440 -1.255 0.526 C12 YDU 9 YDU C14 C10 C 0 1 N N N -4.863 -9.720 -9.066 4.110 0.915 -0.538 C14 YDU 10 YDU N03 N1 N 0 1 Y N N -3.002 -3.417 -4.247 -3.425 -1.097 -0.310 N03 YDU 11 YDU N06 N2 N 0 1 N N N -4.600 -5.601 -6.554 -0.812 1.052 0.181 N06 YDU 12 YDU N15 N3 N 0 1 Y N N -4.095 -3.200 -6.123 -3.211 0.907 0.389 N15 YDU 13 YDU O04 O1 O 0 1 Y N N -3.365 -4.650 -4.670 -2.239 -0.844 -0.348 O04 YDU 14 YDU O08 O2 O 0 1 N N N -3.798 -7.314 -5.181 0.269 -0.730 -0.578 O08 YDU 15 YDU H101 H1 H 0 0 N N N -3.428 -9.367 -7.359 2.539 -0.213 -1.519 H101 YDU 16 YDU H131 H2 H 0 0 N N N -4.687 -9.562 -11.081 5.002 0.650 1.432 H131 YDU 17 YDU H132 H3 H 0 0 N N N -3.556 -10.698 -10.271 6.055 0.144 0.075 H132 YDU 18 YDU H011 H4 H 0 0 N N N -2.660 -0.776 -4.143 -6.052 0.361 -0.592 H011 YDU 19 YDU H013 H5 H 0 0 N N N -2.678 -0.685 -5.937 -5.972 -0.993 0.561 H013 YDU 20 YDU H012 H6 H 0 0 N N N -4.210 -0.522 -5.013 -5.815 0.683 1.143 H012 YDU 21 YDU H092 H7 H 0 0 N N N -5.584 -8.798 -6.403 1.823 1.403 0.972 H092 YDU 22 YDU H091 H8 H 0 0 N N N -5.868 -7.544 -7.657 1.642 2.003 -0.694 H091 YDU 23 YDU H111 H9 H 0 0 N N N -4.011 -6.917 -8.902 2.541 -0.708 1.456 H111 YDU 24 YDU H112 H10 H 0 0 N N N -2.485 -7.483 -8.142 2.387 -1.878 0.110 H112 YDU 25 YDU H121 H11 H 0 0 N N N -3.053 -7.865 -10.894 4.760 -1.851 -0.328 H121 YDU 26 YDU H122 H12 H 0 0 N N N -1.978 -8.965 -9.966 4.716 -1.740 1.462 H122 YDU 27 YDU H142 H13 H 0 0 N N N -5.859 -9.320 -9.307 4.541 0.890 -1.539 H142 YDU 28 YDU H141 H14 H 0 0 N N N -4.965 -10.738 -8.662 3.970 1.947 -0.216 H141 YDU 29 YDU H061 H15 H 0 0 N N N -5.126 -5.395 -7.379 -0.771 1.965 0.505 H061 YDU 30 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YDU C02 C01 SING N N 1 YDU N03 C02 DOUB Y N 2 YDU O04 N03 SING Y N 3 YDU C05 O04 SING Y N 4 YDU C07 N06 SING N N 5 YDU O08 C07 DOUB N N 6 YDU C09 C07 SING N N 7 YDU C10 C09 SING N N 8 YDU C11 C10 SING N N 9 YDU C12 C11 SING N N 10 YDU C13 C12 SING N N 11 YDU C14 C13 SING N N 12 YDU N06 C05 SING N N 13 YDU N15 C05 DOUB Y N 14 YDU C02 N15 SING Y N 15 YDU C10 C14 SING N N 16 YDU C10 H101 SING N N 17 YDU C13 H131 SING N N 18 YDU C13 H132 SING N N 19 YDU C01 H011 SING N N 20 YDU C01 H013 SING N N 21 YDU C01 H012 SING N N 22 YDU C09 H092 SING N N 23 YDU C09 H091 SING N N 24 YDU C11 H111 SING N N 25 YDU C11 H112 SING N N 26 YDU C12 H121 SING N N 27 YDU C12 H122 SING N N 28 YDU C14 H142 SING N N 29 YDU C14 H141 SING N N 30 YDU N06 H061 SING N N 31 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YDU SMILES ACDLabs 12.01 "O=C(Nc1nc(C)no1)CC1CCCC1" YDU InChI InChI 1.06 "InChI=1S/C10H15N3O2/c1-7-11-10(15-13-7)12-9(14)6-8-4-2-3-5-8/h8H,2-6H2,1H3,(H,11,12,13,14)" YDU InChIKey InChI 1.06 BXPGKHXJBBUYFC-UHFFFAOYSA-N YDU SMILES_CANONICAL CACTVS 3.385 "Cc1noc(NC(=O)CC2CCCC2)n1" YDU SMILES CACTVS 3.385 "Cc1noc(NC(=O)CC2CCCC2)n1" YDU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1nc(on1)NC(=O)CC2CCCC2" YDU SMILES "OpenEye OEToolkits" 2.0.7 "Cc1nc(on1)NC(=O)CC2CCCC2" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YDU "SYSTEMATIC NAME" ACDLabs 12.01 "2-cyclopentyl-N-(3-methyl-1,2,4-oxadiazol-5-yl)acetamide" YDU "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-cyclopentyl-~{N}-(3-methyl-1,2,4-oxadiazol-5-yl)ethanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YDU "Create component" 2023-01-26 RCSB YDU "Initial release" 2023-02-15 RCSB #