data_YDV # _chem_comp.id YDV _chem_comp.name "[(3aR,6aS)-5-(1H-benzotriazole-5-carbonyl)hexahydropyrrolo[3,4-c]pyrrol-2(1H)-yl][5-cyclopropyl-6-(2,2,2-trifluoroethoxy)pyridin-3-yl]methanone" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H23 F3 N6 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-13 _chem_comp.pdbx_modified_date 2024-12-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 500.473 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YDV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7G64 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YDV C11 C1 C 0 1 N N N N N N -10.447 13.108 52.516 5.258 1.462 0.127 C11 YDV 1 YDV C15 C2 C 0 1 Y N N N N N -8.003 10.937 54.339 5.243 -2.263 0.525 C15 YDV 2 YDV C16 C3 C 0 1 Y N N N N N -8.044 13.635 53.247 7.023 -0.246 -0.228 C16 YDV 3 YDV C17 C4 C 0 1 Y N N N N N -6.897 13.109 53.918 7.448 -1.577 -0.225 C17 YDV 4 YDV C18 C5 C 0 1 Y N N N N N -6.898 11.763 54.444 6.546 -2.589 0.156 C18 YDV 5 YDV C22 C6 C 0 1 N N N N N N -13.995 9.529 47.689 -1.679 3.014 0.074 C22 YDV 6 YDV C23 C7 C 0 1 Y N N N N N -13.354 8.491 46.861 -2.690 1.939 0.074 C23 YDV 7 YDV C25 C8 C 0 1 Y N N N N N -12.585 8.758 45.702 -2.310 0.603 0.269 C25 YDV 8 YDV C26 C9 C 0 1 Y N N N N N -12.077 7.695 44.967 -3.292 -0.366 0.262 C26 YDV 9 YDV C27 C10 C 0 1 Y N N N N N -12.377 6.446 45.445 -4.617 0.009 0.062 C27 YDV 10 YDV N1 N1 N 0 1 N N N N N N -11.176 12.251 51.704 3.953 1.744 -0.056 N1 YDV 11 YDV C2 C11 C 0 1 N N N N N N -10.698 11.060 51.016 3.358 3.110 -0.202 C2 YDV 12 YDV C3 C12 C 0 1 N N N N N N -12.569 12.478 51.328 2.842 0.750 -0.154 C3 YDV 13 YDV C4 C13 C 0 1 N N S N N N -12.902 11.107 50.751 1.643 1.561 -0.525 C4 YDV 14 YDV C5 C14 C 0 1 N N S N N N -11.640 11.132 49.814 1.935 2.896 0.270 C5 YDV 15 YDV C6 C15 C 0 1 N N N N N N -11.997 9.794 49.172 0.748 3.694 -0.224 C6 YDV 16 YDV N7 N2 N 0 1 N N N N N N -13.365 10.083 48.759 -0.375 2.712 -0.092 N7 YDV 17 YDV C8 C16 C 0 1 N N N N N N -13.944 11.098 49.633 0.207 1.340 -0.176 C8 YDV 18 YDV C12 C17 C 0 1 Y N N N N N -9.147 12.726 53.160 5.716 0.057 0.133 C12 YDV 19 YDV O13 O1 O 0 1 N N N N N N -10.935 14.209 52.670 6.060 2.363 0.280 O13 YDV 20 YDV C14 C18 C 0 1 Y N N N N N -9.113 11.432 53.717 4.834 -0.963 0.515 C14 YDV 21 YDV N19 N3 N 0 1 Y N N N N N -5.635 11.570 55.020 7.238 -3.770 0.061 N19 YDV 22 YDV N20 N4 N 0 1 Y N N N N N -4.945 12.690 54.868 8.532 -3.446 -0.371 N20 YDV 23 YDV N21 N5 N 0 1 Y N N N N N -5.620 13.637 54.230 8.626 -2.172 -0.529 N21 YDV 24 YDV O24 O2 O 0 1 N N N N N N -15.146 9.867 47.414 -2.021 4.171 0.222 O24 YDV 25 YDV N28 N6 N 0 1 Y N N N N N -13.099 6.169 46.542 -4.944 1.280 -0.119 N28 YDV 26 YDV C29 C19 C 0 1 Y N N N N N -13.590 7.194 47.229 -4.041 2.237 -0.113 C29 YDV 27 YDV O30 O3 O 0 1 N N N N N N -11.833 5.454 44.706 -5.585 -0.938 0.054 O30 YDV 28 YDV C31 C20 C 0 1 N N N N N N -11.224 7.821 43.750 -2.934 -1.816 0.466 C31 YDV 29 YDV C32 C21 C 0 1 N N N N N N -11.987 4.107 45.152 -6.927 -0.492 -0.155 C32 YDV 30 YDV C33 C22 C 0 1 N N N N N N -11.126 3.244 44.283 -7.873 -1.694 -0.133 C33 YDV 31 YDV F34 F1 F 0 1 N N N N N N -10.294 2.518 45.035 -7.782 -2.336 1.107 F34 YDV 32 YDV F35 F2 F 0 1 N N N N N N -11.846 2.377 43.593 -9.186 -1.258 -0.338 F35 YDV 33 YDV F36 F3 F 0 1 N N N N N N -10.382 3.925 43.354 -7.515 -2.588 -1.148 F36 YDV 34 YDV C37 C23 C 0 1 N N N N N N -11.884 8.224 42.456 -1.974 -2.455 -0.540 C37 YDV 35 YDV C38 C24 C 0 1 N N N N N N -10.940 9.162 43.119 -1.495 -2.136 0.878 C38 YDV 36 YDV H48 H1 H 0 1 N N N N N N -7.988 9.933 54.736 4.555 -3.043 0.816 H48 YDV 37 YDV H49 H2 H 0 1 N N N N N N -8.076 14.635 52.840 7.703 0.541 -0.518 H49 YDV 38 YDV H51 H3 H 0 1 N N N N N N -12.396 9.776 45.394 -1.273 0.340 0.421 H51 YDV 39 YDV H40 H4 H 0 1 N N N N N N -9.640 11.141 50.725 3.874 3.828 0.435 H40 YDV 40 YDV H39 H5 H 0 1 N N N N N N -10.846 10.146 51.610 3.376 3.431 -1.243 H39 YDV 41 YDV H41 H6 H 0 1 N N N N N N -13.195 12.719 52.200 3.059 0.014 -0.928 H41 YDV 42 YDV H42 H7 H 0 1 N N N N N N -12.666 13.274 50.575 2.686 0.258 0.806 H42 YDV 43 YDV H10 H8 H 0 1 N N N N N N -12.946 10.272 51.466 1.698 1.794 -1.589 H10 YDV 44 YDV H9 H9 H 0 1 N N N N N N -11.541 12.002 49.148 1.897 2.742 1.349 H9 YDV 45 YDV H44 H10 H 0 1 N N N N N N -11.349 9.565 48.313 0.576 4.565 0.408 H44 YDV 46 YDV H43 H11 H 0 1 N N N N N N -11.953 8.967 49.896 0.884 3.988 -1.264 H43 YDV 47 YDV H45 H12 H 0 1 N N N N N N -14.937 10.801 50.002 -0.289 0.763 -0.956 H45 YDV 48 YDV H46 H13 H 0 1 N N N N N N -14.016 12.075 49.133 0.124 0.831 0.785 H46 YDV 49 YDV H47 H14 H 0 1 N N N N N N -9.994 10.811 53.650 3.822 -0.717 0.803 H47 YDV 50 YDV H50 H15 H 0 1 N N N N N N -5.312 10.735 55.466 6.898 -4.658 0.256 H50 YDV 51 YDV H52 H16 H 0 1 N N N N N N -14.193 6.998 48.103 -4.347 3.262 -0.260 H52 YDV 52 YDV H53 H17 H 0 1 N N N N N N -10.419 7.078 43.655 -3.726 -2.443 0.874 H53 YDV 53 YDV H54 H18 H 0 1 N N N N N N -11.668 4.020 46.201 -7.206 0.204 0.635 H54 YDV 54 YDV H55 H19 H 0 1 N N N N N N -13.039 3.799 45.062 -6.997 0.008 -1.121 H55 YDV 55 YDV H57 H20 H 0 1 N N N N N N -11.597 7.729 41.516 -2.135 -3.503 -0.793 H57 YDV 56 YDV H56 H21 H 0 1 N N N N N N -12.960 8.451 42.437 -1.602 -1.827 -1.349 H56 YDV 57 YDV H58 H22 H 0 1 N N N N N N -11.319 10.081 43.589 -0.808 -1.299 1.001 H58 YDV 58 YDV H59 H23 H 0 1 N N N N N N -9.956 9.359 42.669 -1.342 -2.975 1.558 H59 YDV 59 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YDV N1 C2 SING N N 1 YDV N1 C3 SING N N 2 YDV N1 C11 SING N N 3 YDV C2 C5 SING N N 4 YDV C3 C4 SING N N 5 YDV C4 C5 SING N N 6 YDV C4 C8 SING N N 7 YDV C5 C6 SING N N 8 YDV C6 N7 SING N N 9 YDV N7 C8 SING N N 10 YDV N7 C22 SING N N 11 YDV C11 C12 SING N N 12 YDV C11 O13 DOUB N N 13 YDV C12 C14 DOUB Y N 14 YDV C12 C16 SING Y N 15 YDV C14 C15 SING Y N 16 YDV C15 C18 DOUB Y N 17 YDV C16 C17 DOUB Y N 18 YDV C17 C18 SING Y N 19 YDV C17 N21 SING Y N 20 YDV C18 N19 SING Y N 21 YDV N19 N20 SING Y N 22 YDV N20 N21 DOUB Y N 23 YDV C22 C23 SING N N 24 YDV C22 O24 DOUB N N 25 YDV C23 C25 DOUB Y N 26 YDV C23 C29 SING Y N 27 YDV C25 C26 SING Y N 28 YDV C26 C27 DOUB Y N 29 YDV C26 C31 SING N N 30 YDV C27 N28 SING Y N 31 YDV C27 O30 SING N N 32 YDV N28 C29 DOUB Y N 33 YDV O30 C32 SING N N 34 YDV C31 C37 SING N N 35 YDV C31 C38 SING N N 36 YDV C32 C33 SING N N 37 YDV C33 F34 SING N N 38 YDV C33 F35 SING N N 39 YDV C33 F36 SING N N 40 YDV C37 C38 SING N N 41 YDV C15 H48 SING N N 42 YDV C16 H49 SING N N 43 YDV C25 H51 SING N N 44 YDV C2 H40 SING N N 45 YDV C2 H39 SING N N 46 YDV C3 H41 SING N N 47 YDV C3 H42 SING N N 48 YDV C4 H10 SING N N 49 YDV C5 H9 SING N N 50 YDV C6 H44 SING N N 51 YDV C6 H43 SING N N 52 YDV C8 H45 SING N N 53 YDV C8 H46 SING N N 54 YDV C14 H47 SING N N 55 YDV N19 H50 SING N N 56 YDV C29 H52 SING N N 57 YDV C31 H53 SING N N 58 YDV C32 H54 SING N N 59 YDV C32 H55 SING N N 60 YDV C37 H57 SING N N 61 YDV C37 H56 SING N N 62 YDV C38 H58 SING N N 63 YDV C38 H59 SING N N 64 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YDV SMILES ACDLabs 12.01 "FC(F)(F)COc1ncc(cc1C1CC1)C(=O)N1CC2CN(CC2C1)C(=O)c1cc2nn[NH]c2cc1" YDV InChI InChI 1.06 "InChI=1S/C24H23F3N6O3/c25-24(26,27)12-36-21-18(13-1-2-13)5-15(7-28-21)23(35)33-10-16-8-32(9-17(16)11-33)22(34)14-3-4-19-20(6-14)30-31-29-19/h3-7,13,16-17H,1-2,8-12H2,(H,29,30,31)" YDV InChIKey InChI 1.06 KZYHBUWLAUZDFH-UHFFFAOYSA-N YDV SMILES_CANONICAL CACTVS 3.385 "FC(F)(F)COc1ncc(cc1C2CC2)C(=O)N3C[C@@H]4CN(C[C@H]4C3)C(=O)c5ccc6[nH]nnc6c5" YDV SMILES CACTVS 3.385 "FC(F)(F)COc1ncc(cc1C2CC2)C(=O)N3C[CH]4CN(C[CH]4C3)C(=O)c5ccc6[nH]nnc6c5" YDV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1C(=O)N3C[C@H]4CN(C[C@@H]4C3)C(=O)c5cc(c(nc5)OCC(F)(F)F)C6CC6)nn[nH]2" YDV SMILES "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1C(=O)N3CC4CN(CC4C3)C(=O)c5cc(c(nc5)OCC(F)(F)F)C6CC6)nn[nH]2" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YDV "SYSTEMATIC NAME" ACDLabs 12.01 "[(3aR,6aS)-5-(1H-benzotriazole-5-carbonyl)hexahydropyrrolo[3,4-c]pyrrol-2(1H)-yl][5-cyclopropyl-6-(2,2,2-trifluoroethoxy)pyridin-3-yl]methanone" YDV "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(3~{a}~{S},6~{a}~{S})-5-[5-cyclopropyl-6-[2,2,2-tris(fluoranyl)ethoxy]pyridin-3-yl]carbonyl-1,3,3~{a},4,6,6~{a}-hexahydropyrrolo[3,4-c]pyrrol-2-yl]-(1~{H}-benzotriazol-5-yl)methanone" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YDV "Create component" 2023-06-13 RCSB YDV "Initial release" 2024-12-18 RCSB #