data_YE9 # _chem_comp.id YE9 _chem_comp.name "[(3aR,8aS)-6-{2-cyclopropyl-6-[(oxan-4-yl)methoxy]pyridine-4-carbonyl}octahydropyrrolo[3,4-d]azepin-2(1H)-yl](3-hydroxy-4,7-dihydro[1,2]oxazolo[5,4-c]pyridin-6(5H)-yl)methanone" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C30 H39 N5 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-13 _chem_comp.pdbx_modified_date 2024-12-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 565.661 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YE9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7G7Q _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YE9 C10 C1 C 0 1 N N N N N N -12.665 9.272 47.921 1.300 2.401 1.363 C10 YE9 1 YE9 C11 C2 C 0 1 N N N N N N -11.983 10.650 47.855 0.147 1.496 1.054 C11 YE9 2 YE9 C13 C3 C 0 1 N N N N N N -11.378 12.283 49.765 -2.324 1.273 0.556 C13 YE9 3 YE9 C15 C4 C 0 1 N N N N N N -14.656 8.711 46.641 2.574 3.280 -0.501 C15 YE9 4 YE9 C16 C5 C 0 1 Y N N N N N -13.748 8.364 45.463 3.426 2.069 -0.436 C16 YE9 5 YE9 C17 C6 C 0 1 Y N N N N N -13.117 9.387 44.713 4.819 2.165 -0.536 C17 YE9 6 YE9 C18 C7 C 0 1 Y N N N N N -12.322 9.006 43.603 5.578 1.014 -0.471 C18 YE9 7 YE9 C19 C8 C 0 1 N N N N N N -11.670 9.976 42.679 7.078 1.107 -0.577 C19 YE9 8 YE9 C20 C9 C 0 1 N N N N N N -10.441 9.545 41.946 7.686 1.136 -1.981 C20 YE9 9 YE9 C21 C10 C 0 1 N N N N N N -11.749 9.717 41.162 7.668 2.407 -1.130 C21 YE9 10 YE9 C23 C11 C 0 1 Y N N N N N -12.740 6.760 43.968 3.698 -0.304 -0.218 C23 YE9 11 YE9 C25 C12 C 0 1 N N N N N N -11.672 5.175 42.484 4.076 -2.640 -0.012 C25 YE9 12 YE9 C26 C13 C 0 1 N N N N N N -11.621 3.636 42.360 3.296 -3.943 0.176 C26 YE9 13 YE9 C27 C14 C 0 1 N N N N N N -10.906 3.337 41.031 4.258 -5.132 0.098 C27 YE9 14 YE9 C28 C15 C 0 1 N N N N N N -11.105 1.837 40.771 3.482 -6.424 0.365 C28 YE9 15 YE9 N1 N1 N 0 1 N N N N N N -10.040 12.800 52.384 -5.109 0.439 0.842 N1 YE9 16 YE9 C2 C16 C 0 1 N N N N N N -11.526 12.776 52.244 -4.779 1.737 0.986 C2 YE9 17 YE9 O3 O1 O 0 1 N N N N N N -12.284 13.130 53.174 -5.623 2.547 1.318 O3 YE9 18 YE9 N4 N2 N 0 1 N N N N N N -12.178 12.391 51.014 -3.512 2.139 0.763 N4 YE9 19 YE9 C5 C17 C 0 1 N N N N N N -13.522 12.784 50.618 -3.024 3.530 0.676 C5 YE9 20 YE9 C6 C18 C 0 1 N N R N N N -13.800 11.924 49.396 -1.510 3.497 1.010 C6 YE9 21 YE9 C7 C19 C 0 1 N N N N N N -14.359 10.586 49.936 -0.752 4.103 -0.130 C7 YE9 22 YE9 C8 C20 C 0 1 N N N N N N -15.037 9.709 48.867 0.655 4.556 0.207 C8 YE9 23 YE9 N9 N3 N 0 1 N N N N N N -14.111 9.312 47.715 1.528 3.413 0.339 N9 YE9 24 YE9 C12 C21 C 0 1 N N S N N N -12.417 11.898 48.686 -1.217 2.045 1.306 C12 YE9 25 YE9 N22 N4 N 0 1 Y N N N N N -12.149 7.727 43.237 5.010 -0.166 -0.317 N22 YE9 26 YE9 O24 O2 O 0 1 N N N N N N -12.464 5.466 43.641 3.165 -1.541 -0.056 O24 YE9 27 YE9 O29 O3 O 0 1 N N N N N N -10.238 1.190 41.713 2.848 -6.343 1.643 O29 YE9 28 YE9 C30 C22 C 0 1 N N N N N N -10.280 1.543 43.133 1.903 -5.278 1.758 C30 YE9 29 YE9 C31 C23 C 0 1 N N N N N N -10.727 3.027 43.443 2.615 -3.940 1.548 C31 YE9 30 YE9 C32 C24 C 0 1 Y N N N N N -13.580 7.000 45.128 2.862 0.803 -0.268 C32 YE9 31 YE9 O33 O4 O 0 1 N N N N N N -15.888 8.435 46.636 2.817 4.152 -1.311 O33 YE9 32 YE9 C35 C25 C 0 1 N N N N N N -9.318 12.456 53.701 -4.141 -0.528 0.292 C35 YE9 33 YE9 C36 C26 C 0 1 Y N N N N N -7.811 12.334 53.340 -4.883 -1.383 -0.704 C36 YE9 34 YE9 C37 C27 C 0 1 Y N N N N N -7.204 12.705 52.132 -6.231 -1.384 -0.830 C37 YE9 35 YE9 C38 C28 C 0 1 N N N N N N -7.928 13.454 51.072 -7.179 -0.550 -0.020 C38 YE9 36 YE9 C39 C29 C 0 1 N N N N N N -9.284 13.936 51.698 -6.441 -0.045 1.236 C39 YE9 37 YE9 C40 C30 C 0 1 Y N N N N N -5.821 12.241 52.251 -6.486 -2.313 -1.856 C40 YE9 38 YE9 N41 N5 N 0 1 Y N N N N N -5.679 11.696 53.482 -5.314 -2.761 -2.234 N41 YE9 39 YE9 O42 O5 O 0 1 Y N N N N N -6.864 11.755 54.112 -4.414 -2.248 -1.600 O42 YE9 40 YE9 O43 O6 O 0 1 N N N N N N -4.866 12.275 51.253 -7.698 -2.671 -2.352 O43 YE9 41 YE9 H50 H1 H 0 1 N N N N N N -12.469 8.837 48.912 1.108 2.901 2.312 H50 YE9 42 YE9 H51 H2 H 0 1 N N N N N N -12.223 8.630 47.145 2.202 1.797 1.463 H51 YE9 43 YE9 H52 H3 H 0 1 N N N N N N -10.931 10.471 48.120 0.209 1.217 0.002 H52 YE9 44 YE9 H53 H4 H 0 1 N N N N N N -12.048 10.960 46.802 0.261 0.589 1.648 H53 YE9 45 YE9 H54 H5 H 0 1 N N N N N N -10.900 13.244 49.522 -2.480 0.289 1.000 H54 YE9 46 YE9 H55 H6 H 0 1 N N N N N N -10.607 11.504 49.861 -2.085 1.184 -0.503 H55 YE9 47 YE9 H56 H7 H 0 1 N N N N N N -13.238 10.427 44.979 5.293 3.127 -0.662 H56 YE9 48 YE9 H57 H8 H 0 1 N N N N N N -11.710 11.034 42.978 7.638 0.592 0.203 H57 YE9 49 YE9 H59 H9 H 0 1 N N N N N N -9.616 10.257 41.796 8.646 0.640 -2.124 H59 YE9 50 YE9 H58 H10 H 0 1 N N N N N N -10.031 8.538 42.111 7.001 1.087 -2.828 H58 YE9 51 YE9 H61 H11 H 0 1 N N N N N N -12.285 8.837 40.776 6.970 3.194 -1.416 H61 YE9 52 YE9 H60 H12 H 0 1 N N N N N N -11.870 10.556 40.461 8.615 2.747 -0.712 H60 YE9 53 YE9 H63 H13 H 0 1 N N N N N N -12.135 5.613 41.587 4.766 -2.507 0.822 H63 YE9 54 YE9 H62 H14 H 0 1 N N N N N N -10.657 5.580 42.607 4.638 -2.684 -0.945 H62 YE9 55 YE9 H64 H15 H 0 1 N N N N N N -12.631 3.200 42.379 2.542 -4.032 -0.607 H64 YE9 56 YE9 H66 H16 H 0 1 N N N N N N -11.350 3.928 40.217 4.706 -5.174 -0.895 H66 YE9 57 YE9 H65 H17 H 0 1 N N N N N N -9.834 3.572 41.112 5.042 -5.016 0.847 H65 YE9 58 YE9 H67 H18 H 0 1 N N N N N N -12.152 1.548 40.945 2.725 -6.560 -0.408 H67 YE9 59 YE9 H68 H19 H 0 1 N N N N N N -10.820 1.580 39.740 4.169 -7.270 0.353 H68 YE9 60 YE9 H44 H20 H 0 1 N N N N N N -14.245 12.573 51.420 -3.175 3.914 -0.333 H44 YE9 61 YE9 H45 H21 H 0 1 N N N N N N -13.559 13.853 50.363 -3.551 4.155 1.396 H45 YE9 62 YE9 H34 H22 H 0 1 N N N N N N -14.545 12.409 48.748 -1.330 4.081 1.912 H34 YE9 63 YE9 H47 H23 H 0 1 N N N N N N -13.526 10.015 50.373 -0.693 3.368 -0.933 H47 YE9 64 YE9 H46 H24 H 0 1 N N N N N N -15.099 10.812 50.718 -1.311 4.963 -0.497 H46 YE9 65 YE9 H48 H25 H 0 1 N N N N N N -15.401 8.791 49.351 1.026 5.204 -0.587 H48 YE9 66 YE9 H49 H26 H 0 1 N N N N N N -15.889 10.266 48.451 0.641 5.110 1.145 H49 YE9 67 YE9 H14 H27 H 0 1 N N N N N N -12.433 12.736 47.974 -1.425 1.896 2.366 H14 YE9 68 YE9 H69 H28 H 0 1 N N N N N N -10.986 0.863 43.632 1.125 -5.399 1.004 H69 YE9 69 YE9 H70 H29 H 0 1 N N N N N N -9.273 1.396 43.550 1.452 -5.298 2.751 H70 YE9 70 YE9 H72 H30 H 0 1 N N N N N N -9.825 3.649 43.540 3.365 -3.800 2.326 H72 YE9 71 YE9 H71 H31 H 0 1 N N N N N N -11.280 3.032 44.394 1.888 -3.129 1.592 H71 YE9 72 YE9 H73 H32 H 0 1 N N N N N N -14.040 6.201 45.690 1.792 0.687 -0.183 H73 YE9 73 YE9 H74 H33 H 0 1 N N N N N N -9.471 13.255 54.441 -3.329 0.002 -0.206 H74 YE9 74 YE9 H75 H34 H 0 1 N N N N N N -9.693 11.504 54.106 -3.743 -1.152 1.092 H75 YE9 75 YE9 H76 H35 H 0 1 N N N N N N -7.333 14.320 50.747 -7.518 0.299 -0.613 H76 YE9 76 YE9 H77 H36 H 0 1 N N N N N N -8.121 12.798 50.210 -8.034 -1.156 0.280 H77 YE9 77 YE9 H79 H37 H 0 1 N N N N N N -9.916 14.350 50.898 -6.335 -0.860 1.952 H79 YE9 78 YE9 H78 H38 H 0 1 N N N N N N -9.072 14.720 52.440 -7.005 0.769 1.690 H78 YE9 79 YE9 H80 H39 H 0 1 N N N N N N -4.073 11.851 51.559 -7.995 -2.128 -3.095 H80 YE9 80 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YE9 N1 C2 SING N N 1 YE9 N1 C35 SING N N 2 YE9 N1 C39 SING N N 3 YE9 C2 O3 DOUB N N 4 YE9 C2 N4 SING N N 5 YE9 N4 C5 SING N N 6 YE9 N4 C13 SING N N 7 YE9 C5 C6 SING N N 8 YE9 C6 C7 SING N N 9 YE9 C6 C12 SING N N 10 YE9 C7 C8 SING N N 11 YE9 C8 N9 SING N N 12 YE9 N9 C10 SING N N 13 YE9 N9 C15 SING N N 14 YE9 C10 C11 SING N N 15 YE9 C11 C12 SING N N 16 YE9 C12 C13 SING N N 17 YE9 C15 C16 SING N N 18 YE9 C15 O33 DOUB N N 19 YE9 C16 C17 DOUB Y N 20 YE9 C16 C32 SING Y N 21 YE9 C17 C18 SING Y N 22 YE9 C18 C19 SING N N 23 YE9 C18 N22 DOUB Y N 24 YE9 C19 C20 SING N N 25 YE9 C19 C21 SING N N 26 YE9 C20 C21 SING N N 27 YE9 N22 C23 SING Y N 28 YE9 C23 O24 SING N N 29 YE9 C23 C32 DOUB Y N 30 YE9 O24 C25 SING N N 31 YE9 C25 C26 SING N N 32 YE9 C26 C27 SING N N 33 YE9 C26 C31 SING N N 34 YE9 C27 C28 SING N N 35 YE9 C28 O29 SING N N 36 YE9 O29 C30 SING N N 37 YE9 C30 C31 SING N N 38 YE9 C35 C36 SING N N 39 YE9 C36 C37 DOUB Y N 40 YE9 C36 O42 SING Y N 41 YE9 C37 C38 SING N N 42 YE9 C37 C40 SING Y N 43 YE9 C38 C39 SING N N 44 YE9 C40 N41 DOUB Y N 45 YE9 C40 O43 SING N N 46 YE9 N41 O42 SING Y N 47 YE9 C10 H50 SING N N 48 YE9 C10 H51 SING N N 49 YE9 C11 H52 SING N N 50 YE9 C11 H53 SING N N 51 YE9 C13 H54 SING N N 52 YE9 C13 H55 SING N N 53 YE9 C17 H56 SING N N 54 YE9 C19 H57 SING N N 55 YE9 C20 H59 SING N N 56 YE9 C20 H58 SING N N 57 YE9 C21 H61 SING N N 58 YE9 C21 H60 SING N N 59 YE9 C25 H63 SING N N 60 YE9 C25 H62 SING N N 61 YE9 C26 H64 SING N N 62 YE9 C27 H66 SING N N 63 YE9 C27 H65 SING N N 64 YE9 C28 H67 SING N N 65 YE9 C28 H68 SING N N 66 YE9 C5 H44 SING N N 67 YE9 C5 H45 SING N N 68 YE9 C6 H34 SING N N 69 YE9 C7 H47 SING N N 70 YE9 C7 H46 SING N N 71 YE9 C8 H48 SING N N 72 YE9 C8 H49 SING N N 73 YE9 C12 H14 SING N N 74 YE9 C30 H69 SING N N 75 YE9 C30 H70 SING N N 76 YE9 C31 H72 SING N N 77 YE9 C31 H71 SING N N 78 YE9 C32 H73 SING N N 79 YE9 C35 H74 SING N N 80 YE9 C35 H75 SING N N 81 YE9 C38 H76 SING N N 82 YE9 C38 H77 SING N N 83 YE9 C39 H79 SING N N 84 YE9 C39 H78 SING N N 85 YE9 O43 H80 SING N N 86 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YE9 SMILES ACDLabs 12.01 "O=C(c1cc(nc(OCC2CCOCC2)c1)C1CC1)N1CCC2CN(CC2CC1)C(=O)N1Cc2onc(O)c2CC1" YE9 InChI InChI 1.06 "InChI=1S/C30H39N5O6/c36-28-24-5-10-34(17-26(24)41-32-28)30(38)35-15-21-3-8-33(9-4-22(21)16-35)29(37)23-13-25(20-1-2-20)31-27(14-23)40-18-19-6-11-39-12-7-19/h13-14,19-22H,1-12,15-18H2,(H,32,36)" YE9 InChIKey InChI 1.06 MFAFPFCSTKBXTH-UHFFFAOYSA-N YE9 SMILES_CANONICAL CACTVS 3.385 "Oc1noc2CN(CCc12)C(=O)N3C[C@H]4CCN(CC[C@H]4C3)C(=O)c5cc(OCC6CCOCC6)nc(c5)C7CC7" YE9 SMILES CACTVS 3.385 "Oc1noc2CN(CCc12)C(=O)N3C[CH]4CCN(CC[CH]4C3)C(=O)c5cc(OCC6CCOCC6)nc(c5)C7CC7" YE9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c(cc(nc1C2CC2)OCC3CCOCC3)C(=O)N4CC[C@@H]5CN(C[C@@H]5CC4)C(=O)N6CCc7c(onc7O)C6" YE9 SMILES "OpenEye OEToolkits" 2.0.7 "c1c(cc(nc1C2CC2)OCC3CCOCC3)C(=O)N4CCC5CN(CC5CC4)C(=O)N6CCc7c(onc7O)C6" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YE9 "SYSTEMATIC NAME" ACDLabs 12.01 "[(3aR,8aS)-6-{2-cyclopropyl-6-[(oxan-4-yl)methoxy]pyridine-4-carbonyl}octahydropyrrolo[3,4-d]azepin-2(1H)-yl](3-hydroxy-4,7-dihydro[1,2]oxazolo[5,4-c]pyridin-6(5H)-yl)methanone" YE9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(3~{a}~{R},8~{a}~{S})-2-[(3-oxidanyl-5,7-dihydro-4~{H}-[1,2]oxazolo[5,4-c]pyridin-6-yl)carbonyl]-1,3,3~{a},4,5,7,8,8~{a}-octahydropyrrolo[3,4-d]azepin-6-yl]-[2-cyclopropyl-6-(oxan-4-ylmethoxy)pyridin-4-yl]methanone" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YE9 "Create component" 2023-06-13 RCSB YE9 "Initial release" 2024-12-18 RCSB #