data_YEJ # _chem_comp.id YEJ _chem_comp.name "8-[[(3R,4R)-3-[[1,1-bis(oxidanylidene)thian-4-yl]methoxy]piperidin-4-yl]amino]-3-methyl-1H-1,7-naphthyridin-2-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H28 N4 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-07-11 _chem_comp.pdbx_modified_date 2015-08-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 420.526 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YEJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5A82 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YEJ O3 O3 O 0 1 N N N -24.311 42.635 12.117 2.197 -3.248 2.265 O3 YEJ 1 YEJ C19 C19 C 0 1 N N N -25.103 43.497 11.747 2.704 -2.715 1.293 C19 YEJ 2 YEJ C1 C1 C 0 1 N N N -24.834 44.494 10.733 3.630 -3.444 0.512 C1 YEJ 3 YEJ C C C 0 1 N N N -23.490 44.501 10.057 3.977 -4.861 0.888 C YEJ 4 YEJ N3 N3 N 0 1 N N N -26.343 43.573 12.277 2.364 -1.449 0.988 N3 YEJ 5 YEJ C18 C18 C 0 1 Y N N -27.327 44.487 11.944 2.915 -0.814 -0.102 C18 YEJ 6 YEJ C3 C3 C 0 1 Y N N -27.018 45.448 10.970 3.845 -1.494 -0.907 C3 YEJ 7 YEJ C2 C2 C 0 1 N N N -25.721 45.434 10.344 4.206 -2.871 -0.573 C2 YEJ 8 YEJ C6 C6 C 0 1 Y N N -28.596 44.397 12.557 2.575 0.503 -0.439 C6 YEJ 9 YEJ N N N 0 1 Y N N -29.529 45.313 12.219 3.126 1.078 -1.494 N YEJ 10 YEJ C5 C5 C 0 1 Y N N -29.241 46.253 11.302 4.003 0.457 -2.265 C5 YEJ 11 YEJ C4 C4 C 0 1 Y N N -28.027 46.363 10.649 4.393 -0.828 -2.013 C4 YEJ 12 YEJ N1 N1 N 0 1 N N N -28.957 43.430 13.418 1.658 1.204 0.336 N1 YEJ 13 YEJ C7 C7 C 0 1 N N R -30.254 43.244 14.033 1.303 2.581 -0.016 C7 YEJ 14 YEJ C11 C11 C 0 1 N N R -30.943 42.184 13.187 -0.089 2.907 0.534 C11 YEJ 15 YEJ C10 C10 C 0 1 N N N -32.326 41.831 13.804 -0.429 4.364 0.216 C10 YEJ 16 YEJ N2 N2 N 0 1 N N N -32.204 41.350 15.178 0.576 5.247 0.823 N2 YEJ 17 YEJ C9 C9 C 0 1 N N N -31.413 42.223 16.056 1.913 4.984 0.275 C9 YEJ 18 YEJ C8 C8 C 0 1 N N N -30.123 42.759 15.473 2.323 3.545 0.595 C8 YEJ 19 YEJ O O O 0 1 N N N -31.138 42.732 11.877 -1.055 2.047 -0.074 O YEJ 20 YEJ C12 C12 C 0 1 N N N -31.321 41.760 10.843 -2.180 1.758 0.758 C12 YEJ 21 YEJ C13 C13 C 0 1 N N N -31.223 42.505 9.535 -3.144 0.835 0.010 C13 YEJ 22 YEJ C17 C17 C 0 1 N N N -31.555 41.569 8.379 -4.400 0.630 0.852 C17 YEJ 23 YEJ C16 C16 C 0 1 N N N -31.540 42.278 7.022 -5.477 -0.074 0.023 C16 YEJ 24 YEJ S S S 0 1 N N N -29.910 42.851 6.667 -4.885 -1.730 -0.431 S YEJ 25 YEJ O1 O1 O 0 1 N N N -29.939 43.664 5.482 -5.761 -2.273 -1.409 O1 YEJ 26 YEJ O2 O2 O 0 1 N N N -28.999 41.739 6.708 -4.631 -2.464 0.759 O2 YEJ 27 YEJ C15 C15 C 0 1 N N N -29.628 43.882 8.071 -3.299 -1.337 -1.224 C15 YEJ 28 YEJ C14 C14 C 0 1 N N N -29.823 43.070 9.333 -2.455 -0.498 -0.262 C14 YEJ 29 YEJ H3 H3 H 0 1 N N N -26.573 42.901 12.981 1.723 -0.979 1.543 H3 YEJ 30 YEJ HC1 HC1 H 0 1 N N N -23.454 45.316 9.320 3.421 -5.147 1.780 HC1 YEJ 31 YEJ HC2 HC2 H 0 1 N N N -22.702 44.652 10.809 3.716 -5.529 0.067 HC2 YEJ 32 YEJ HC3 HC3 H 0 1 N N N -23.331 43.539 9.548 5.046 -4.932 1.088 HC3 YEJ 33 YEJ H2 H2 H 0 1 N N N -25.465 46.157 9.583 4.915 -3.419 -1.177 H2 YEJ 34 YEJ H4 H4 H 0 1 N N N -27.862 47.134 9.911 5.110 -1.321 -2.652 H4 YEJ 35 YEJ H1 H1 H 0 1 N N N -28.778 42.574 12.932 1.254 0.781 1.110 H1 YEJ 36 YEJ H5 H5 H 0 1 N N N -30.010 46.971 11.059 4.420 0.977 -3.115 H5 YEJ 37 YEJ H7 H7 H 0 1 N N N -30.836 44.177 14.007 1.300 2.690 -1.101 H7 YEJ 38 YEJ H11 H11 H 0 1 N N N -30.321 41.278 13.147 -0.097 2.758 1.614 H11 YEJ 39 YEJ H81C H81C H 0 0 N N N -29.370 41.958 15.502 2.353 3.407 1.675 H81C YEJ 40 YEJ H82C H82C H 0 0 N N N -29.786 43.602 16.094 3.309 3.346 0.174 H82C YEJ 41 YEJ H101 H101 H 0 0 N N N -32.958 42.731 13.797 -0.434 4.509 -0.864 H101 YEJ 42 YEJ H102 H102 H 0 0 N N N -32.798 41.047 13.194 -1.413 4.604 0.619 H102 YEJ 43 YEJ HA HA H 0 1 N N N -33.123 41.268 15.564 0.322 6.216 0.708 HA YEJ 44 YEJ H91C H91C H 0 0 N N N -32.041 43.083 16.330 1.897 5.126 -0.806 H91C YEJ 45 YEJ H92C H92C H 0 0 N N N -31.161 41.651 16.961 2.630 5.674 0.720 H92C YEJ 46 YEJ H121 H121 H 0 0 N N N -30.538 40.990 10.902 -1.841 1.266 1.670 H121 YEJ 47 YEJ H122 H122 H 0 0 N N N -32.309 41.286 10.937 -2.691 2.686 1.015 H122 YEJ 48 YEJ H13 H13 H 0 1 N N N -31.945 43.335 9.539 -3.420 1.297 -0.938 H13 YEJ 49 YEJ H171 H171 H 0 0 N N N -30.814 40.757 8.360 -4.156 0.020 1.722 H171 YEJ 50 YEJ H172 H172 H 0 0 N N N -32.557 41.147 8.545 -4.775 1.598 1.185 H172 YEJ 51 YEJ H141 H141 H 0 0 N N N -29.590 43.716 10.192 -1.476 -0.316 -0.704 H141 YEJ 52 YEJ H142 H142 H 0 0 N N N -29.117 42.227 9.307 -2.331 -1.039 0.676 H142 YEJ 53 YEJ H161 H161 H 0 0 N N N -31.859 41.575 6.239 -6.391 -0.161 0.611 H161 YEJ 54 YEJ H162 H162 H 0 0 N N N -32.230 43.134 7.049 -5.676 0.503 -0.880 H162 YEJ 55 YEJ H151 H151 H 0 0 N N N -28.600 44.272 8.040 -2.771 -2.261 -1.462 H151 YEJ 56 YEJ H152 H152 H 0 0 N N N -30.339 44.721 8.060 -3.479 -0.772 -2.139 H152 YEJ 57 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YEJ O3 C19 DOUB N N 1 YEJ C19 C1 SING N N 2 YEJ C19 N3 SING N N 3 YEJ C1 C SING N N 4 YEJ C1 C2 DOUB N N 5 YEJ N3 C18 SING N N 6 YEJ C18 C3 DOUB Y N 7 YEJ C18 C6 SING Y N 8 YEJ C3 C2 SING N N 9 YEJ C3 C4 SING Y N 10 YEJ C6 N DOUB Y N 11 YEJ C6 N1 SING N N 12 YEJ N C5 SING Y N 13 YEJ C5 C4 DOUB Y N 14 YEJ N1 C7 SING N N 15 YEJ C7 C11 SING N N 16 YEJ C7 C8 SING N N 17 YEJ C11 C10 SING N N 18 YEJ C11 O SING N N 19 YEJ C10 N2 SING N N 20 YEJ N2 C9 SING N N 21 YEJ C9 C8 SING N N 22 YEJ O C12 SING N N 23 YEJ C12 C13 SING N N 24 YEJ C13 C17 SING N N 25 YEJ C13 C14 SING N N 26 YEJ C17 C16 SING N N 27 YEJ C16 S SING N N 28 YEJ S O1 DOUB N N 29 YEJ S O2 DOUB N N 30 YEJ S C15 SING N N 31 YEJ C15 C14 SING N N 32 YEJ N3 H3 SING N N 33 YEJ C HC1 SING N N 34 YEJ C HC2 SING N N 35 YEJ C HC3 SING N N 36 YEJ C2 H2 SING N N 37 YEJ C4 H4 SING N N 38 YEJ N1 H1 SING N N 39 YEJ C5 H5 SING N N 40 YEJ C7 H7 SING N N 41 YEJ C11 H11 SING N N 42 YEJ C8 H81C SING N N 43 YEJ C8 H82C SING N N 44 YEJ C10 H101 SING N N 45 YEJ C10 H102 SING N N 46 YEJ N2 HA SING N N 47 YEJ C9 H91C SING N N 48 YEJ C9 H92C SING N N 49 YEJ C12 H121 SING N N 50 YEJ C12 H122 SING N N 51 YEJ C13 H13 SING N N 52 YEJ C17 H171 SING N N 53 YEJ C17 H172 SING N N 54 YEJ C14 H141 SING N N 55 YEJ C14 H142 SING N N 56 YEJ C16 H161 SING N N 57 YEJ C16 H162 SING N N 58 YEJ C15 H151 SING N N 59 YEJ C15 H152 SING N N 60 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YEJ InChI InChI 1.03 "InChI=1S/C20H28N4O4S/c1-13-10-15-2-7-22-19(18(15)24-20(13)25)23-16-3-6-21-11-17(16)28-12-14-4-8-29(26,27)9-5-14/h2,7,10,14,16-17,21H,3-6,8-9,11-12H2,1H3,(H,22,23)(H,24,25)/t16-,17-/m1/s1" YEJ InChIKey InChI 1.03 IMRGYBMGTASFSC-IAGOWNOFSA-N YEJ SMILES_CANONICAL CACTVS 3.385 "CC1=Cc2ccnc(N[C@@H]3CCNC[C@H]3OCC4CC[S](=O)(=O)CC4)c2NC1=O" YEJ SMILES CACTVS 3.385 "CC1=Cc2ccnc(N[CH]3CCNC[CH]3OCC4CC[S](=O)(=O)CC4)c2NC1=O" YEJ SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC1=Cc2ccnc(c2NC1=O)N[C@@H]3CCNC[C@H]3OCC4CCS(=O)(=O)CC4" YEJ SMILES "OpenEye OEToolkits" 1.7.6 "CC1=Cc2ccnc(c2NC1=O)NC3CCNCC3OCC4CCS(=O)(=O)CC4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YEJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "8-[[(3R,4R)-3-[[1,1-bis(oxidanylidene)thian-4-yl]methoxy]piperidin-4-yl]amino]-3-methyl-1H-1,7-naphthyridin-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YEJ "Create component" 2015-07-11 EBI YEJ "Initial release" 2015-08-12 RCSB #