data_YEN
#
_chem_comp.id YEN
_chem_comp.name "N-{(2S)-4-(methylamino)-4-oxo-2-[4-(phosphonooxy)benzyl]butanoyl}-L-alpha-glutamyl-L-aspartamide"
_chem_comp.type peptide-like
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C21 H30 N5 O11 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2010-02-03
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 559.464
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code YEN
_chem_comp.pdbx_model_coordinates_details "not provided"
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3KFJ
_chem_comp.pdbx_subcomponent_list "FY0 GLU ASN NH2"
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YEN C1 C1 C 0 1 Y N N -0.133 2.924 9.778 -3.950 -1.271 -0.200 C1 FY0 1
YEN C2 C2 C 0 1 Y N N 0.482 3.533 8.669 -5.201 -1.179 -0.779 C2 FY0 2
YEN C3 C3 C 0 1 Y N N -0.189 4.525 7.924 -5.847 0.048 -0.838 C3 FY0 3
YEN C4 C4 C 0 1 Y N N -1.494 4.903 8.321 -5.234 1.178 -0.317 C4 FY0 4
YEN C5 C5 C 0 1 Y N N -2.096 4.318 9.447 -3.983 1.080 0.260 C5 FY0 5
YEN C6 C6 C 0 1 Y N N -1.431 3.314 10.187 -3.341 -0.143 0.319 C6 FY0 6
YEN O1 O1 O 0 1 N N N 0.457 5.004 6.932 -7.077 0.141 -1.407 O1 FY0 7
YEN P1 P1 P 0 1 N N N 0.109 6.075 5.907 -8.294 -0.078 -0.376 P1 FY0 8
YEN O2 O2 O 0 1 N N N -1.110 5.648 5.125 -9.688 -0.075 -1.182 O2 FY0 9
YEN O3 O3 O 0 1 N N N -0.146 7.361 6.588 -8.127 -1.376 0.315 O3 FY0 10
YEN O4 O4 O 0 1 N N N 1.271 6.226 4.950 -8.299 1.111 0.709 O4 FY0 11
YEN C7 C7 C 0 1 N N N -2.070 2.700 11.386 -1.977 -0.247 0.950 C7 FY0 12
YEN C8 C8 C 0 1 N N S -2.520 1.204 11.198 -0.903 -0.023 -0.117 C8 FY0 13
YEN C9 C9 C 0 1 N N N -3.589 0.994 10.207 0.459 -0.248 0.486 C9 FY0 14
YEN O5 O5 O 0 1 N N N -3.821 -0.155 9.848 0.568 -0.467 1.674 O5 FY0 15
YEN C10 C10 C 0 1 N N N -2.920 0.568 12.575 -0.998 1.411 -0.643 C10 FY0 16
YEN C11 C11 C 0 1 N N N -1.821 0.521 13.533 -0.657 2.375 0.464 C11 FY0 17
YEN N1 N1 N 0 1 N N N -1.783 1.245 14.604 -0.578 3.696 0.207 N1 FY0 18
YEN C12 C12 C 0 1 N N N -2.671 1.132 15.667 -0.246 4.633 1.283 C12 FY0 19
YEN O7 O7 O 0 1 N N N -0.839 -0.167 13.292 -0.454 1.963 1.586 O7 FY0 20
YEN N2 N2 N 0 1 N N N -4.259 1.991 9.692 1.557 -0.206 -0.294 N GLU 21
YEN C13 C13 C 0 1 N N S -5.239 1.976 8.682 2.868 -0.539 0.267 CA GLU 22
YEN C14 C14 C 0 1 N N N -4.691 2.092 7.328 3.947 0.138 -0.538 C GLU 23
YEN O8 O8 O 0 1 N N N -5.453 2.099 6.371 3.650 0.831 -1.488 O GLU 24
YEN C15 C15 C 0 1 N N N -6.225 3.153 8.970 3.073 -2.055 0.221 CB GLU 25
YEN C16 C16 C 0 1 N N N -7.010 3.009 10.305 2.054 -2.735 1.138 CG GLU 26
YEN C17 C17 C 0 1 N N N -7.906 4.127 10.533 2.256 -4.228 1.092 CD GLU 27
YEN O9 O9 O 0 1 N N N -7.459 5.235 10.790 3.124 -4.700 0.397 OE1 GLU 28
YEN O10 O10 O 0 1 N N N -9.124 4.003 10.466 1.470 -5.034 1.823 OE2 GLU 29
YEN N3 N3 N 0 1 N N N -3.430 2.199 7.048 5.242 -0.027 -0.203 N ASN 30
YEN C18 C18 C 0 1 N N S -2.536 1.128 6.862 6.291 0.632 -0.986 CA ASN 31
YEN C19 C19 C 0 1 N N N -1.357 1.606 6.147 6.640 -0.223 -2.177 C ASN 32
YEN O12 O12 O 0 1 N N N -0.235 1.361 6.566 6.069 -1.279 -2.354 O ASN 33
YEN C20 C20 C 0 1 N N N -3.145 -0.140 6.168 7.533 0.824 -0.115 CB ASN 34
YEN C21 C21 C 0 1 N N N -2.278 -1.305 6.214 7.216 1.778 1.008 CG ASN 35
YEN O13 O13 O 0 1 N N N -1.846 -1.810 5.188 6.106 2.256 1.102 OD1 ASN 36
YEN N4 N4 N 0 1 N N N -1.944 -1.840 7.331 8.167 2.099 1.908 ND2 ASN 37
YEN N5 N5 N 0 1 N N N -1.440 2.276 5.055 7.587 0.185 -3.045 N NH2 38
YEN H1 H1 H 0 1 N N N 0.390 2.152 10.322 -3.448 -2.226 -0.149 H1 FY0 39
YEN H2 H2 H 0 1 N N N 1.481 3.237 8.384 -5.675 -2.060 -1.184 H2 FY0 40
YEN H3 H3 H 0 1 N N N -2.032 5.648 7.753 -5.735 2.134 -0.363 H3 FY0 41
YEN H4 H4 H 0 1 N N N -3.081 4.640 9.752 -3.506 1.960 0.666 H4 FY0 42
YEN H5 H5 H 0 1 N N N -1.797 6.296 5.230 -10.466 -0.203 -0.622 H5 FY0 43
YEN H6 H6 H 0 1 N N N 1.597 7.118 4.985 -8.405 1.993 0.326 H6 FY0 44
YEN H7 H7 H 0 1 N N N -1.340 2.730 12.208 -1.878 0.509 1.729 H7 FY0 45
YEN H8 H8 H 0 1 N N N -2.965 3.292 11.629 -1.853 -1.238 1.387 H8 FY0 46
YEN H9 H9 H 0 1 N N N -1.638 0.693 10.786 -1.056 -0.722 -0.939 H9 FY0 47
YEN H11 H11 H 0 1 N N N -3.729 1.173 13.010 -0.298 1.542 -1.468 H11 FY0 48
YEN H12 H12 H 0 1 N N N -3.260 -0.462 12.391 -2.012 1.603 -0.993 H12 FY0 49
YEN H13 H13 H 0 1 N N N -1.063 1.936 14.672 -0.740 4.025 -0.691 H13 FY0 50
YEN H14 H14 H 0 1 N N N -2.410 1.866 16.443 -0.228 5.648 0.887 H14 FY0 51
YEN H15 H15 H 0 1 N N N -3.694 1.323 15.311 -0.997 4.563 2.070 H15 FY0 52
YEN H16 H16 H 0 1 N N N -2.612 0.117 16.088 0.734 4.385 1.691 H16 FY0 53
YEN H17 H17 H 0 1 N N N -4.045 2.892 10.069 1.479 0.045 -1.228 H GLU 54
YEN H19 H19 H 0 1 N N N -5.747 1.001 8.708 2.918 -0.198 1.301 HA GLU 55
YEN H20 H20 H 0 1 N N N -5.639 4.083 9.019 2.935 -2.409 -0.801 HB2 GLU 56
YEN H21 H21 H 0 1 N N N -6.956 3.192 8.149 4.081 -2.296 0.556 HB3 GLU 57
YEN H22 H22 H 0 1 N N N -7.605 2.085 10.265 2.192 -2.382 2.160 HG2 GLU 58
YEN H23 H23 H 0 1 N N N -6.288 2.963 11.134 1.046 -2.494 0.803 HG3 GLU 59
YEN H24 H24 H 0 1 N N N -9.538 4.841 10.636 1.637 -5.985 1.761 HE2 GLU 60
YEN H26 H26 H 0 1 N N N -3.060 3.123 6.956 5.480 -0.581 0.557 H ASN 61
YEN H28 H28 H 0 1 N N N -2.265 0.776 7.868 5.933 1.603 -1.329 HA ASN 62
YEN H29 H29 H 0 1 N N N -4.084 -0.393 6.682 7.839 -0.137 0.300 HB2 ASN 63
YEN H30 H30 H 0 1 N N N -3.331 0.105 5.112 8.342 1.232 -0.720 HB3 ASN 64
YEN H31 H31 H 0 1 N N N -1.349 -2.644 7.342 9.055 1.716 1.833 HD21 ASN 65
YEN H32 H32 H 0 1 N N N -2.279 -1.454 8.190 7.963 2.712 2.631 HD22 ASN 66
YEN H34 H34 H 0 1 N N N -0.608 2.573 4.586 8.043 1.029 -2.904 HN1 NH2 67
YEN H35 H35 H 0 1 N N N -2.336 2.501 4.673 7.811 -0.365 -3.812 HN2 NH2 68
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YEN C1 C2 SING Y N 1
YEN C1 C6 DOUB Y N 2
YEN C1 H1 SING N N 3
YEN C2 C3 DOUB Y N 4
YEN C2 H2 SING N N 5
YEN C3 C4 SING Y N 6
YEN C3 O1 SING N N 7
YEN C4 C5 DOUB Y N 8
YEN C4 H3 SING N N 9
YEN C5 C6 SING Y N 10
YEN C5 H4 SING N N 11
YEN C6 C7 SING N N 12
YEN O1 P1 SING N N 13
YEN P1 O2 SING N N 14
YEN P1 O3 DOUB N N 15
YEN P1 O4 SING N N 16
YEN O2 H5 SING N N 17
YEN O4 H6 SING N N 18
YEN C7 C8 SING N N 19
YEN C7 H7 SING N N 20
YEN C7 H8 SING N N 21
YEN C8 C9 SING N N 22
YEN C8 C10 SING N N 23
YEN C8 H9 SING N N 24
YEN C9 O5 DOUB N N 25
YEN C9 N2 SING N N 26
YEN C10 C11 SING N N 27
YEN C10 H11 SING N N 28
YEN C10 H12 SING N N 29
YEN C11 N1 SING N N 30
YEN C11 O7 DOUB N N 31
YEN N1 C12 SING N N 32
YEN N1 H13 SING N N 33
YEN C12 H14 SING N N 34
YEN C12 H15 SING N N 35
YEN C12 H16 SING N N 36
YEN N2 C13 SING N N 37
YEN N2 H17 SING N N 38
YEN C13 C14 SING N N 39
YEN C13 C15 SING N N 40
YEN C13 H19 SING N N 41
YEN C14 O8 DOUB N N 42
YEN C14 N3 SING N N 43
YEN C15 C16 SING N N 44
YEN C15 H20 SING N N 45
YEN C15 H21 SING N N 46
YEN C16 C17 SING N N 47
YEN C16 H22 SING N N 48
YEN C16 H23 SING N N 49
YEN C17 O9 DOUB N N 50
YEN C17 O10 SING N N 51
YEN O10 H24 SING N N 52
YEN N3 C18 SING N N 53
YEN N3 H26 SING N N 54
YEN C18 C19 SING N N 55
YEN C18 C20 SING N N 56
YEN C18 H28 SING N N 57
YEN C19 O12 DOUB N N 58
YEN C19 N5 SING N N 59
YEN C20 C21 SING N N 60
YEN C20 H29 SING N N 61
YEN C20 H30 SING N N 62
YEN C21 O13 DOUB N N 63
YEN C21 N4 SING N N 64
YEN N4 H31 SING N N 65
YEN N4 H32 SING N N 66
YEN N5 H34 SING N N 67
YEN N5 H35 SING N N 68
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YEN SMILES ACDLabs 12.01 "O=C(N)C(NC(=O)C(NC(=O)C(CC(=O)NC)Cc1ccc(OP(=O)(O)O)cc1)CCC(=O)O)CC(=O)N"
YEN SMILES_CANONICAL CACTVS 3.370 "CNC(=O)C[C@H](Cc1ccc(O[P](O)(O)=O)cc1)C(=O)N[C@@H](CCC(O)=O)C(=O)N[C@@H](CC(N)=O)C(N)=O"
YEN SMILES CACTVS 3.370 "CNC(=O)C[CH](Cc1ccc(O[P](O)(O)=O)cc1)C(=O)N[CH](CCC(O)=O)C(=O)N[CH](CC(N)=O)C(N)=O"
YEN SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "CNC(=O)C[C@H](Cc1ccc(cc1)OP(=O)(O)O)C(=O)N[C@@H](CCC(=O)O)C(=O)N[C@@H](CC(=O)N)C(=O)N"
YEN SMILES "OpenEye OEToolkits" 1.7.0 "CNC(=O)CC(Cc1ccc(cc1)OP(=O)(O)O)C(=O)NC(CCC(=O)O)C(=O)NC(CC(=O)N)C(=O)N"
YEN InChI InChI 1.03
"InChI=1S/C21H30N5O11P/c1-24-17(28)9-12(8-11-2-4-13(5-3-11)37-38(34,35)36)20(32)25-14(6-7-18(29)30)21(33)26-15(19(23)31)10-16(22)27/h2-5,12,14-15H,6-10H2,1H3,(H2,22,27)(H2,23,31)(H,24,28)(H,25,32)(H,26,33)(H,29,30)(H2,34,35,36)/t12-,14-,15-/m0/s1"
YEN InChIKey InChI 1.03 NPYWTYXAKSZNLF-QEJZJMRPSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
YEN "SYSTEMATIC NAME" ACDLabs 12.01 "N-{(2S)-4-(methylamino)-4-oxo-2-[4-(phosphonooxy)benzyl]butanoyl}-L-alpha-glutamyl-L-aspartamide"
YEN "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "(4S)-5-[[(2S)-1,4-bis(azanyl)-1,4-dioxo-butan-2-yl]amino]-4-[[(2S)-4-(methylamino)-4-oxo-2-[(4-phosphonooxyphenyl)methyl]butanoyl]amino]-5-oxo-pentanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YEN "Create component" 2010-02-03 RCSB
YEN "Other modification" 2010-11-11 RCSB
YEN "Modify descriptor" 2011-06-04 RCSB
#