data_YF4 # _chem_comp.id YF4 _chem_comp.name "5-{[ETHYL(METHYL)AMINO]METHYL}-2-METHYL-5,6-DIHYDROPYRIMIDIN-4-AMINE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H16 N4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2004-07-01 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 180.250 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YF4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1T9A _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YF4 "N1'" "N1'" N 0 1 Y N N 3.615 105.548 52.580 1.491 0.160 -1.700 "N1'" YF4 1 YF4 "C2'" "C2'" C 0 1 Y N N 3.793 106.415 53.742 0.663 0.071 -2.721 "C2'" YF4 2 YF4 CM2 CM2 C 0 1 N N N 4.908 107.390 53.804 1.223 0.063 -4.120 CM2 YF4 3 YF4 "N3'" "N3'" N 0 1 Y N N 2.938 106.354 54.807 -0.640 -0.010 -2.553 "N3'" YF4 4 YF4 "C4'" "C4'" C 0 1 Y N N 1.836 105.428 54.796 -1.168 -0.010 -1.332 "C4'" YF4 5 YF4 "N4'" "N4'" N 0 1 N N N 1.083 105.495 55.926 -2.540 -0.096 -1.159 "N4'" YF4 6 YF4 "C5'" "C5'" C 0 1 Y N N 1.510 104.450 53.640 -0.319 0.088 -0.228 "C5'" YF4 7 YF4 "C6'" "C6'" C 0 1 Y N N 2.501 104.580 52.515 1.040 0.171 -0.453 "C6'" YF4 8 YF4 "C7'" "C7'" C 0 1 N N N 0.343 103.493 53.649 -0.872 0.097 1.173 "C7'" YF4 9 YF4 CM4 CM4 C 0 1 N N N -1.404 102.602 57.310 0.784 0.445 4.492 CM4 YF4 10 YF4 C4 C4 C 0 1 N N N -0.818 103.028 55.952 -0.322 0.460 3.436 C4 YF4 11 YF4 N3 N3 N 0 1 N N N 0.162 102.635 54.816 0.235 0.062 2.136 N3 YF4 12 YF4 C2 C2 C 0 1 N N N 0.942 101.435 54.802 0.640 -1.344 2.263 C2 YF4 13 YF4 HM21 1HM2 H 0 0 N N N 4.855 108.035 52.896 1.426 -0.963 -4.424 HM21 YF4 14 YF4 HM22 2HM2 H 0 0 N N N 5.044 108.052 54.691 0.500 0.507 -4.804 HM22 YF4 15 YF4 HM23 3HM2 H 0 0 N N N 5.861 106.837 53.636 2.148 0.639 -4.145 HM23 YF4 16 YF4 "H4'1" "1H4'" H 0 0 N N N 0.759 106.448 56.094 -3.124 -0.157 -1.931 "H4'1" YF4 17 YF4 "H4'2" "2H4'" H 0 0 N N N 0.302 104.839 55.918 -2.917 -0.096 -0.265 "H4'2" YF4 18 YF4 "H6'" "H6'" H 0 1 N N N 2.408 103.947 51.616 1.728 0.245 0.375 "H6'" YF4 19 YF4 "H7'1" "1H7'" H 0 0 N N N 0.386 102.858 52.734 -1.508 -0.775 1.318 "H7'1" YF4 20 YF4 "H7'2" "2H7'" H 0 0 N N N -0.597 104.064 53.468 -1.458 1.003 1.326 "H7'2" YF4 21 YF4 HM41 1HM4 H 0 0 N N N -0.467 102.453 57.896 0.370 0.740 5.456 HM41 YF4 22 YF4 HM42 2HM4 H 0 0 N N N -2.109 102.885 58.127 1.201 -0.559 4.567 HM42 YF4 23 YF4 HM43 3HM4 H 0 0 N N N -1.790 101.588 57.053 1.570 1.143 4.205 HM43 YF4 24 YF4 H41 1H4 H 0 1 N N N -0.432 104.042 56.209 -1.107 -0.238 3.723 H41 YF4 25 YF4 H42 2H4 H 0 1 N N N -1.755 103.177 55.367 -0.738 1.464 3.360 H42 YF4 26 YF4 H21 1H2 H 0 1 N N N 2.022 101.677 54.663 0.952 -1.721 1.289 H21 YF4 27 YF4 H22 2H2 H 0 1 N N N 0.804 100.780 55.693 1.470 -1.421 2.965 H22 YF4 28 YF4 H23 3H2 H 0 1 N N N 0.751 100.860 53.866 -0.200 -1.932 2.629 H23 YF4 29 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YF4 "N1'" "C2'" DOUB Y N 1 YF4 "N1'" "C6'" SING Y N 2 YF4 "C2'" CM2 SING N N 3 YF4 "C2'" "N3'" SING Y N 4 YF4 CM2 HM21 SING N N 5 YF4 CM2 HM22 SING N N 6 YF4 CM2 HM23 SING N N 7 YF4 "N3'" "C4'" DOUB Y N 8 YF4 "C4'" "N4'" SING N N 9 YF4 "C4'" "C5'" SING Y N 10 YF4 "N4'" "H4'1" SING N N 11 YF4 "N4'" "H4'2" SING N N 12 YF4 "C5'" "C6'" DOUB Y N 13 YF4 "C5'" "C7'" SING N N 14 YF4 "C6'" "H6'" SING N N 15 YF4 "C7'" N3 SING N N 16 YF4 "C7'" "H7'1" SING N N 17 YF4 "C7'" "H7'2" SING N N 18 YF4 CM4 C4 SING N N 19 YF4 CM4 HM41 SING N N 20 YF4 CM4 HM42 SING N N 21 YF4 CM4 HM43 SING N N 22 YF4 C4 N3 SING N N 23 YF4 C4 H41 SING N N 24 YF4 C4 H42 SING N N 25 YF4 N3 C2 SING N N 26 YF4 C2 H21 SING N N 27 YF4 C2 H22 SING N N 28 YF4 C2 H23 SING N N 29 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YF4 SMILES ACDLabs 10.04 "n1c(N)c(cnc1C)CN(CC)C" YF4 SMILES_CANONICAL CACTVS 3.341 "CCN(C)Cc1cnc(C)nc1N" YF4 SMILES CACTVS 3.341 "CCN(C)Cc1cnc(C)nc1N" YF4 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CCN(C)Cc1cnc(nc1N)C" YF4 SMILES "OpenEye OEToolkits" 1.5.0 "CCN(C)Cc1cnc(nc1N)C" YF4 InChI InChI 1.03 "InChI=1S/C9H16N4/c1-4-13(3)6-8-5-11-7(2)12-9(8)10/h5H,4,6H2,1-3H3,(H2,10,11,12)" YF4 InChIKey InChI 1.03 UMZINNCUCWRLDQ-UHFFFAOYSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YF4 "SYSTEMATIC NAME" ACDLabs 10.04 "5-{[ethyl(methyl)amino]methyl}-2-methylpyrimidin-4-amine" YF4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "5-[(ethyl-methyl-amino)methyl]-2-methyl-pyrimidin-4-amine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YF4 "Create component" 2004-07-01 PDBJ YF4 "Modify descriptor" 2011-06-04 RCSB #