data_YF9 # _chem_comp.id YF9 _chem_comp.name "(2R)-6-chloro-2-{[6-(oxetane-3-sulfonyl)-6,7-dihydro-5H-pyrrolo[3,4-d]pyrimidin-2-yl]amino}-2,3-dihydro-1H-indene-4-carbonitrile" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H18 Cl N5 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-13 _chem_comp.pdbx_modified_date 2024-12-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 431.896 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YF9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7G61 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YF9 C10 C1 C 0 1 N N N N N N -12.907 6.518 44.454 3.655 -1.528 0.280 C10 YF9 1 YF9 C11 C2 C 0 1 N N S N N N -13.299 5.896 45.810 2.571 -0.491 -0.085 C11 YF9 2 YF9 C16 C3 C 0 1 Y N N N N N -13.228 9.217 48.058 -2.122 -0.027 0.626 C16 YF9 3 YF9 C17 C4 C 0 1 Y N N N N N -14.370 9.811 48.557 -2.240 0.574 -0.614 C17 YF9 4 YF9 C18 C5 C 0 1 Y N N N N N -15.539 9.244 48.294 -1.101 0.746 -1.384 C18 YF9 5 YF9 C20 C6 C 0 1 N N N N N N -14.070 11.000 49.430 -3.684 0.924 -0.853 C20 YF9 6 YF9 C22 C7 C 0 1 N N N N N N -12.060 10.004 48.437 -3.485 -0.100 1.261 C22 YF9 7 YF9 C24 C8 C 0 1 N N N N N N -11.334 11.600 51.437 -6.784 -0.870 -0.116 C24 YF9 8 YF9 C25 C9 C 0 1 N N N N N N -10.591 12.421 52.588 -8.324 -0.894 -0.120 C25 YF9 9 YF9 C27 C10 C 0 1 N N N N N N -12.499 11.526 52.513 -6.892 -0.880 -1.652 C27 YF9 10 YF9 N1 N1 N 0 1 N N N N N N -10.677 7.690 41.662 6.698 -3.820 0.043 N1 YF9 11 YF9 C2 C11 C 0 1 N N N N N N -10.928 6.701 42.103 6.511 -2.700 0.029 C2 YF9 12 YF9 C3 C12 C 0 1 Y N N N N N -11.301 5.438 42.753 6.274 -1.288 0.010 C3 YF9 13 YF9 C4 C13 C 0 1 Y N N N N N -10.730 4.242 42.266 7.344 -0.403 -0.124 C4 YF9 14 YF9 C5 C14 C 0 1 Y N N N N N -11.092 3.162 42.896 7.108 0.958 -0.141 C5 YF9 15 YF9 CL6 CL1 CL 0 0 N N N N N N -10.352 1.680 42.260 8.435 2.065 -0.308 CL6 YF9 16 YF9 C7 C15 C 0 1 Y N N N N N -12.011 3.092 44.000 5.817 1.440 -0.027 C7 YF9 17 YF9 C8 C16 C 0 1 Y N N N N N -12.535 4.194 44.429 4.748 0.566 0.106 C8 YF9 18 YF9 C9 C17 C 0 1 Y N N N N N -12.186 5.420 43.838 4.970 -0.795 0.125 C9 YF9 19 YF9 C12 C18 C 0 1 N N N N N N -13.523 4.418 45.484 3.267 0.846 0.247 C12 YF9 20 YF9 N13 N2 N 0 1 N N N N N N -14.489 6.468 46.414 1.375 -0.675 0.741 N13 YF9 21 YF9 C14 C19 C 0 1 Y N N N N N -14.456 7.570 47.127 0.142 -0.249 0.278 C14 YF9 22 YF9 N15 N3 N 0 1 Y N N N N N -13.167 8.109 47.359 -0.929 -0.423 1.039 N15 YF9 23 YF9 N19 N4 N 0 1 Y N N N N N -15.639 8.117 47.569 0.063 0.331 -0.910 N19 YF9 24 YF9 N21 N5 N 0 1 N N N N N N -12.659 11.139 49.225 -4.446 0.497 0.327 N21 YF9 25 YF9 S23 S1 S 0 1 N N N N N N -11.696 12.330 49.990 -6.077 0.659 0.558 S23 YF9 26 YF9 O26 O1 O 0 1 N N N N N N -11.881 12.590 53.262 -8.199 -1.452 -1.444 O26 YF9 27 YF9 O28 O2 O 0 1 N N N N N N -10.462 12.518 49.240 -6.437 1.772 -0.247 O28 YF9 28 YF9 O29 O3 O 0 1 N N N N N N -12.508 13.503 49.968 -6.228 0.697 1.971 O29 YF9 29 YF9 H32 H1 H 0 1 N N N N N N -12.263 7.400 44.586 3.527 -1.862 1.309 H32 YF9 30 YF9 H33 H2 H 0 1 N N N N N N -13.794 6.797 43.867 3.611 -2.377 -0.402 H33 YF9 31 YF9 H34 H3 H 0 1 N N N N N N -12.447 5.984 46.500 2.323 -0.547 -1.145 H34 YF9 32 YF9 H38 H4 H 0 1 N N N N N N -16.440 9.702 48.675 -1.162 1.211 -2.357 H38 YF9 33 YF9 H40 H5 H 0 1 N N N N N N -14.617 11.894 49.097 -3.786 2.000 -0.988 H40 YF9 34 YF9 H39 H6 H 0 1 N N N N N N -14.307 10.797 50.485 -4.050 0.403 -1.737 H39 YF9 35 YF9 H41 H7 H 0 1 N N N N N N -11.369 9.413 49.057 -3.750 -1.140 1.449 H41 YF9 36 YF9 H42 H8 H 0 1 N N N N N N -11.529 10.376 47.549 -3.486 0.456 2.199 H42 YF9 37 YF9 H43 H9 H 0 1 N N N N N N -10.867 10.618 51.273 -6.331 -1.770 0.299 H43 YF9 38 YF9 H44 H10 H 0 1 N N N N N N -9.855 11.836 53.159 -8.756 -1.581 0.609 H44 YF9 39 YF9 H45 H11 H 0 1 N N N N N N -10.130 13.361 52.249 -8.781 0.095 -0.099 H45 YF9 40 YF9 H47 H12 H 0 1 N N N N N N -13.493 11.777 52.115 -6.912 0.114 -2.100 H47 YF9 41 YF9 H46 H13 H 0 1 N N N N N N -12.551 10.569 53.053 -6.187 -1.554 -2.140 H46 YF9 42 YF9 H30 H14 H 0 1 N N N N N N -10.044 4.225 41.432 8.352 -0.780 -0.213 H30 YF9 43 YF9 H31 H15 H 0 1 N N N N N N -12.257 2.145 44.458 5.639 2.505 -0.042 H31 YF9 44 YF9 H36 H16 H 0 1 N N N N N N -14.546 4.238 45.121 2.959 1.618 -0.459 H36 YF9 45 YF9 H35 H17 H 0 1 N N N N N N -13.327 3.780 46.359 3.034 1.150 1.267 H35 YF9 46 YF9 H37 H18 H 0 1 N N N N N N -15.126 6.642 45.663 1.447 -1.095 1.612 H37 YF9 47 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YF9 N1 C2 TRIP N N 1 YF9 C2 C3 SING N N 2 YF9 C3 C4 DOUB Y N 3 YF9 C3 C9 SING Y N 4 YF9 C4 C5 SING Y N 5 YF9 C5 CL6 SING N N 6 YF9 C5 C7 DOUB Y N 7 YF9 C7 C8 SING Y N 8 YF9 C8 C9 DOUB Y N 9 YF9 C8 C12 SING N N 10 YF9 C9 C10 SING N N 11 YF9 C10 C11 SING N N 12 YF9 C11 C12 SING N N 13 YF9 C11 N13 SING N N 14 YF9 N13 C14 SING N N 15 YF9 C14 N15 DOUB Y N 16 YF9 C14 N19 SING Y N 17 YF9 N15 C16 SING Y N 18 YF9 C16 C17 DOUB Y N 19 YF9 C16 C22 SING N N 20 YF9 C17 C18 SING Y N 21 YF9 C17 C20 SING N N 22 YF9 C18 N19 DOUB Y N 23 YF9 C20 N21 SING N N 24 YF9 N21 C22 SING N N 25 YF9 N21 S23 SING N N 26 YF9 S23 C24 SING N N 27 YF9 S23 O28 DOUB N N 28 YF9 S23 O29 DOUB N N 29 YF9 C24 C25 SING N N 30 YF9 C24 C27 SING N N 31 YF9 C25 O26 SING N N 32 YF9 O26 C27 SING N N 33 YF9 C10 H32 SING N N 34 YF9 C10 H33 SING N N 35 YF9 C11 H34 SING N N 36 YF9 C18 H38 SING N N 37 YF9 C20 H40 SING N N 38 YF9 C20 H39 SING N N 39 YF9 C22 H41 SING N N 40 YF9 C22 H42 SING N N 41 YF9 C24 H43 SING N N 42 YF9 C25 H44 SING N N 43 YF9 C25 H45 SING N N 44 YF9 C27 H47 SING N N 45 YF9 C27 H46 SING N N 46 YF9 C4 H30 SING N N 47 YF9 C7 H31 SING N N 48 YF9 C12 H36 SING N N 49 YF9 C12 H35 SING N N 50 YF9 N13 H37 SING N N 51 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YF9 SMILES ACDLabs 12.01 "O=S(=O)(N1Cc2nc(NC3Cc4cc(Cl)cc(C#N)c4C3)ncc2C1)C1COC1" YF9 InChI InChI 1.06 "InChI=1S/C19H18ClN5O3S/c20-14-1-11-3-15(4-17(11)12(2-14)5-21)23-19-22-6-13-7-25(8-18(13)24-19)29(26,27)16-9-28-10-16/h1-2,6,15-16H,3-4,7-10H2,(H,22,23,24)/t15-/m1/s1" YF9 InChIKey InChI 1.06 UHKXYXZSKFBQCD-OAHLLOKOSA-N YF9 SMILES_CANONICAL CACTVS 3.385 "Clc1cc2C[C@@H](Cc2c(c1)C#N)Nc3ncc4CN(Cc4n3)[S](=O)(=O)C5COC5" YF9 SMILES CACTVS 3.385 "Clc1cc2C[CH](Cc2c(c1)C#N)Nc3ncc4CN(Cc4n3)[S](=O)(=O)C5COC5" YF9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c(cc(c2c1C[C@@H](C2)Nc3ncc4c(n3)CN(C4)S(=O)(=O)C5COC5)C#N)Cl" YF9 SMILES "OpenEye OEToolkits" 2.0.7 "c1c(cc(c2c1CC(C2)Nc3ncc4c(n3)CN(C4)S(=O)(=O)C5COC5)C#N)Cl" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YF9 "SYSTEMATIC NAME" ACDLabs 12.01 "(2R)-6-chloro-2-{[6-(oxetane-3-sulfonyl)-6,7-dihydro-5H-pyrrolo[3,4-d]pyrimidin-2-yl]amino}-2,3-dihydro-1H-indene-4-carbonitrile" YF9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-6-chloranyl-2-[[6-(oxetan-3-ylsulfonyl)-5,7-dihydropyrrolo[3,4-d]pyrimidin-2-yl]amino]-2,3-dihydro-1~{H}-indene-4-carbonitrile" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YF9 "Create component" 2023-06-13 RCSB YF9 "Initial release" 2024-12-18 RCSB #