data_YFM # _chem_comp.id YFM _chem_comp.name "7-[[2,6-bis(oxidanylidene)cyclohexylidene]-oxidanyl-methyl]-1,6-dimethyl-4-[[4-(trifluoromethyloxy)phenyl]methyl]-3~{H}-1,4-benzodiazepine-2,5-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H23 F3 N2 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-11-30 _chem_comp.pdbx_modified_date 2024-11-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 516.466 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YFM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8X6C _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YFM C13 C1 C 0 1 N N N N N N 3.173 -3.519 81.594 -4.248 -1.177 0.254 C13 YFM 1 YFM C17 C2 C 0 1 N N N N N N 4.792 -6.495 83.645 -1.856 -3.559 -1.527 C17 YFM 2 YFM C20 C3 C 0 1 N N N N N N 5.329 -4.817 81.200 -4.194 -3.609 0.185 C20 YFM 3 YFM C24 C4 C 0 1 N N N N N N -4.279 -3.339 83.192 1.793 2.677 1.300 C24 YFM 4 YFM C26 C5 C 0 1 N N N N N N -0.366 0.362 85.544 -2.755 4.944 -0.792 C26 YFM 5 YFM C28 C6 C 0 1 Y N N N N N -4.384 -3.974 85.796 2.584 0.390 1.937 C28 YFM 6 YFM C01 C7 C 0 1 Y N N N N N 2.002 -3.019 82.347 -3.594 0.115 0.010 C01 YFM 7 YFM C02 C8 C 0 1 Y N N N N N 2.442 -1.857 83.224 -4.183 1.052 -0.852 C02 YFM 8 YFM C03 C9 C 0 1 Y N N N N N 1.343 -1.169 83.982 -3.578 2.251 -1.073 C03 YFM 9 YFM C04 C10 C 0 1 Y N N N N N -0.074 -1.674 83.812 -2.364 2.573 -0.454 C04 YFM 10 YFM C05 C11 C 0 1 Y N N N N N -0.593 -2.850 82.924 -1.760 1.648 0.402 C05 YFM 11 YFM C06 C12 C 0 1 Y N N N N N 0.570 -3.542 82.137 -2.387 0.418 0.637 C06 YFM 12 YFM C08 C13 C 0 1 N N N N N N -2.626 -0.846 84.941 -0.540 4.070 -0.945 C08 YFM 13 YFM C09 C14 C 0 1 N N N N N N -3.177 -1.846 84.104 0.512 3.001 -0.854 C09 YFM 14 YFM C11 C15 C 0 1 N N N N N N -1.858 -3.224 82.827 -0.482 1.897 1.081 C11 YFM 15 YFM C12 C16 C 0 1 N N N N N N 0.427 -4.708 81.171 -1.751 -0.583 1.567 C12 YFM 16 YFM C14 C17 C 0 1 N N N N N N 3.994 -4.736 81.898 -3.651 -2.361 -0.198 C14 YFM 17 YFM C16 C18 C 0 1 N N N N N N 3.706 -5.536 83.152 -2.510 -2.296 -1.030 C16 YFM 18 YFM C18 C19 C 0 1 N N N N N N 6.189 -5.954 83.319 -2.066 -4.677 -0.503 C18 YFM 19 YFM C19 C20 C 0 1 N N N N N N 6.398 -5.709 81.817 -3.567 -4.893 -0.293 C19 YFM 20 YFM C27 C21 C 0 1 Y N N N N N -4.936 -3.168 84.595 2.689 1.482 1.097 C27 YFM 21 YFM C29 C22 C 0 1 Y N N N N N -4.942 -3.749 87.197 3.404 -0.706 1.753 C29 YFM 22 YFM C30 C23 C 0 1 Y N N N N N -6.066 -2.743 87.412 4.331 -0.712 0.720 C30 YFM 23 YFM C31 C24 C 0 1 Y N N N N N -6.619 -1.924 86.244 4.430 0.383 -0.125 C31 YFM 24 YFM C32 C25 C 0 1 Y N N N N N -6.067 -2.135 84.836 3.615 1.481 0.070 C32 YFM 25 YFM C34 C26 C 0 1 N N N N N N -5.681 -1.719 89.442 6.069 -1.725 -0.547 C34 YFM 26 YFM F35 F1 F 0 1 N N N N N N -5.075 -0.820 88.600 5.373 -1.569 -1.750 F35 YFM 27 YFM F36 F2 F 0 1 N N N N N N -6.376 -1.018 90.385 6.816 -2.908 -0.590 F36 YFM 28 YFM F37 F3 F 0 1 N N N N N N -4.716 -2.464 90.067 6.928 -0.637 -0.360 F37 YFM 29 YFM N07 N1 N 0 1 N N N N N N -1.014 -0.691 84.814 -1.827 3.813 -0.730 N07 YFM 30 YFM N10 N2 N 0 1 N N N N N N -2.951 -2.715 83.427 0.564 2.504 0.521 N10 YFM 31 YFM O15 O1 O 0 1 N N N N N N 3.418 -2.786 80.683 -5.420 -1.224 0.916 O15 YFM 32 YFM O21 O2 O 0 1 N N N N N N 2.378 -5.651 83.556 -2.054 -1.216 -1.347 O21 YFM 33 YFM O22 O3 O 0 1 N N N N N N 5.522 -4.171 80.212 -5.173 -3.647 0.903 O22 YFM 34 YFM O23 O4 O 0 1 N N N N N N -2.111 -4.137 82.133 -0.371 1.526 2.234 O23 YFM 35 YFM O25 O5 O 0 1 N N N N N N -3.276 -0.146 85.621 -0.206 5.202 -1.222 O25 YFM 36 YFM O33 O6 O 0 1 N N N N N N -6.554 -2.555 88.708 5.139 -1.789 0.537 O33 YFM 37 YFM H1 H1 H 0 1 N N N N N N 4.698 -6.616 84.734 -2.302 -3.849 -2.478 H1 YFM 38 YFM H2 H2 H 0 1 N N N N N N 4.660 -7.471 83.155 -0.788 -3.387 -1.663 H2 YFM 39 YFM H3 H3 H 0 1 N N N N N N -4.844 -2.806 82.413 1.543 2.768 2.357 H3 YFM 40 YFM H4 H4 H 0 1 N N N N N N -4.185 -4.400 82.916 2.308 3.578 0.970 H4 YFM 41 YFM H5 H5 H 0 1 N N N N N N -1.111 0.905 86.144 -2.850 5.391 0.197 H5 YFM 42 YFM H6 H6 H 0 1 N N N N N N 0.397 -0.069 86.209 -2.373 5.689 -1.492 H6 YFM 43 YFM H7 H7 H 0 1 N N N N N N 0.113 1.057 84.838 -3.731 4.596 -1.130 H7 YFM 44 YFM H8 H8 H 0 1 N N N N N N -3.599 -4.700 85.641 1.863 0.395 2.741 H8 YFM 45 YFM H9 H9 H 0 1 N N N N N N 3.474 -1.548 83.297 -5.119 0.822 -1.340 H9 YFM 46 YFM H10 H10 H 0 1 N N N N N N 1.558 -0.334 84.633 -4.042 2.965 -1.738 H10 YFM 47 YFM H11 H11 H 0 1 N N N N N N -3.758 -1.216 83.414 0.261 2.182 -1.528 H11 YFM 48 YFM H12 H12 H 0 1 N N N N N N -3.858 -2.334 84.817 1.481 3.417 -1.130 H12 YFM 49 YFM H13 H13 H 0 1 N N N N N N 0.523 -5.655 81.722 -0.992 -1.150 1.027 H13 YFM 50 YFM H14 H14 H 0 1 N N N N N N -0.560 -4.664 80.687 -1.287 -0.059 2.403 H14 YFM 51 YFM H15 H15 H 0 1 N N N N N N 1.214 -4.648 80.405 -2.514 -1.265 1.944 H15 YFM 52 YFM H18 H18 H 0 1 N N N N N N 6.937 -6.683 83.663 -1.614 -5.598 -0.871 H18 YFM 53 YFM H19 H19 H 0 1 N N N N N N 6.331 -5.003 83.853 -1.602 -4.397 0.443 H19 YFM 54 YFM H20 H20 H 0 1 N N N N N N 6.385 -6.680 81.299 -3.721 -5.673 0.452 H20 YFM 55 YFM H21 H21 H 0 1 N N N N N N 7.378 -5.230 81.674 -4.026 -5.193 -1.235 H21 YFM 56 YFM H22 H22 H 0 1 N N N N N N -4.542 -4.301 88.035 3.325 -1.558 2.412 H22 YFM 57 YFM H23 H23 H 0 1 N N N N N N -7.399 -1.197 86.415 5.150 0.381 -0.930 H23 YFM 58 YFM H24 H24 H 0 1 N N N N N N -6.464 -1.565 84.009 3.694 2.336 -0.586 H24 YFM 59 YFM H16 H16 H 0 1 N N N N N N 4.223 -3.063 80.261 -5.793 -0.381 1.207 H16 YFM 60 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YFM O22 C20 DOUB N N 1 YFM O15 C13 SING N N 2 YFM C12 C06 SING N N 3 YFM C20 C19 SING N N 4 YFM C20 C14 SING N N 5 YFM C13 C14 DOUB N N 6 YFM C13 C01 SING N N 7 YFM C19 C18 SING N N 8 YFM C14 C16 SING N N 9 YFM O23 C11 DOUB N N 10 YFM C06 C01 DOUB Y N 11 YFM C06 C05 SING Y N 12 YFM C01 C02 SING Y N 13 YFM C11 C05 SING N N 14 YFM C11 N10 SING N N 15 YFM C05 C04 DOUB Y N 16 YFM C16 O21 DOUB N N 17 YFM C16 C17 SING N N 18 YFM C24 N10 SING N N 19 YFM C24 C27 SING N N 20 YFM C02 C03 DOUB Y N 21 YFM C18 C17 SING N N 22 YFM N10 C09 SING N N 23 YFM C04 C03 SING Y N 24 YFM C04 N07 SING N N 25 YFM C09 C08 SING N N 26 YFM C27 C32 DOUB Y N 27 YFM C27 C28 SING Y N 28 YFM N07 C08 SING N N 29 YFM N07 C26 SING N N 30 YFM C32 C31 SING Y N 31 YFM C08 O25 DOUB N N 32 YFM C28 C29 DOUB Y N 33 YFM C31 C30 DOUB Y N 34 YFM C29 C30 SING Y N 35 YFM C30 O33 SING N N 36 YFM F35 C34 SING N N 37 YFM O33 C34 SING N N 38 YFM C34 F37 SING N N 39 YFM C34 F36 SING N N 40 YFM C17 H1 SING N N 41 YFM C17 H2 SING N N 42 YFM C24 H3 SING N N 43 YFM C24 H4 SING N N 44 YFM C26 H5 SING N N 45 YFM C26 H6 SING N N 46 YFM C26 H7 SING N N 47 YFM C28 H8 SING N N 48 YFM C02 H9 SING N N 49 YFM C03 H10 SING N N 50 YFM C09 H11 SING N N 51 YFM C09 H12 SING N N 52 YFM C12 H13 SING N N 53 YFM C12 H14 SING N N 54 YFM C12 H15 SING N N 55 YFM C18 H18 SING N N 56 YFM C18 H19 SING N N 57 YFM C19 H20 SING N N 58 YFM C19 H21 SING N N 59 YFM C29 H22 SING N N 60 YFM C31 H23 SING N N 61 YFM C32 H24 SING N N 62 YFM O15 H16 SING N N 63 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YFM InChI InChI 1.06 "InChI=1S/C26H23F3N2O6/c1-14-17(24(35)23-19(32)4-3-5-20(23)33)10-11-18-22(14)25(36)31(13-21(34)30(18)2)12-15-6-8-16(9-7-15)37-26(27,28)29/h6-11,35H,3-5,12-13H2,1-2H3" YFM InChIKey InChI 1.06 ZRRLVHNNQUIUDH-UHFFFAOYSA-N YFM SMILES_CANONICAL CACTVS 3.385 "CN1C(=O)CN(Cc2ccc(OC(F)(F)F)cc2)C(=O)c3c(C)c(ccc13)[C](O)=[C]4C(=O)C[CH2]CC4=O" YFM SMILES CACTVS 3.385 "CN1C(=O)CN(Cc2ccc(OC(F)(F)F)cc2)C(=O)c3c(C)c(ccc13)[C](O)=[C]4C(=O)C[CH2]CC4=O" YFM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(ccc2c1C(=O)N(CC(=O)N2C)Cc3ccc(cc3)OC(F)(F)F)C(=C4C(=O)CCCC4=O)O" YFM SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(ccc2c1C(=O)N(CC(=O)N2C)Cc3ccc(cc3)OC(F)(F)F)C(=C4C(=O)CCCC4=O)O" # _pdbx_chem_comp_identifier.comp_id YFM _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "7-[[2,6-bis(oxidanylidene)cyclohexylidene]-oxidanyl-methyl]-1,6-dimethyl-4-[[4-(trifluoromethyloxy)phenyl]methyl]-3~{H}-1,4-benzodiazepine-2,5-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YFM "Create component" 2023-11-30 PDBJ YFM "Modify descriptor" 2024-07-30 PDBJ YFM "Modify formula" 2024-07-30 PDBJ YFM "Initial release" 2024-11-27 RCSB #