data_YFU # _chem_comp.id YFU _chem_comp.name "1-ethyl-8-[(2-methoxy-7-azaspiro[3.5]nonan-7-yl)carbonyl]-4-[2-oxidanylidene-2-[(3~{S})-1,2,3,4-tetrahydroisoquinolin-3-yl]ethyl]-2,3-dihydro-1,4-benzodiazepin-5-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C32 H40 N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-11-30 _chem_comp.pdbx_modified_date 2025-02-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 544.684 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YFU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8X6L _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YFU C22 C1 C 0 1 Y N N N N N 154.499 121.656 123.181 -9.897 2.323 0.170 C22 YFU 1 YFU C1 C2 C 0 1 N N N N N N 156.926 129.974 119.291 4.523 -0.039 -0.341 C1 YFU 2 YFU N1 N1 N 0 1 N N N N N N 156.966 131.386 119.605 5.135 -1.215 0.292 N1 YFU 3 YFU O1 O1 O 0 1 N N N N N N 156.322 130.687 114.152 8.145 3.936 -0.303 O1 YFU 4 YFU C2 C3 C 0 1 N N N N N N 157.964 129.708 118.205 4.869 1.204 0.488 C2 YFU 5 YFU N2 N2 N 0 1 N N N N N N 157.452 128.014 125.957 -1.820 -0.852 -0.464 N2 YFU 6 YFU O2 O2 O 0 1 N N N N N N 157.266 133.065 121.068 4.905 -3.273 1.092 O2 YFU 7 YFU C3 C4 C 0 1 N N N N N N 157.827 130.725 117.097 6.381 1.264 0.694 C3 YFU 8 YFU N3 N3 N 0 1 N N N N N N 158.374 123.743 125.518 -5.957 0.100 1.850 N3 YFU 9 YFU O3 O3 O 0 1 N N N N N N 159.485 128.544 125.521 -2.041 -2.943 0.296 O3 YFU 10 YFU C4 C5 C 0 1 N N N N N N 158.287 130.399 115.496 7.155 1.673 -0.566 C4 YFU 11 YFU N4 N4 N 0 1 N N N N N N 156.406 130.438 125.955 0.423 -1.267 -2.068 N4 YFU 12 YFU O4 O4 O 0 1 N N N N N N 158.413 125.059 127.787 -3.336 -0.014 1.502 O4 YFU 13 YFU C5 C6 C 0 1 N N N N N N 156.939 129.998 115.308 6.983 3.129 -0.100 C5 YFU 14 YFU C6 C7 C 0 1 N N N N N N 155.906 129.744 113.200 7.861 5.317 -0.535 C6 YFU 15 YFU C7 C8 C 0 1 N N N N N N 156.281 130.376 116.503 6.859 2.576 1.330 C7 YFU 16 YFU C8 C9 C 0 1 N N N N N N 157.922 132.124 117.669 6.942 0.018 1.376 C8 YFU 17 YFU C9 C10 C 0 1 N N N N N N 156.719 132.352 118.586 6.583 -1.217 0.541 C9 YFU 18 YFU C10 C11 C 0 1 N N N N N N 157.257 131.918 120.921 4.380 -2.275 0.639 C10 YFU 19 YFU C11 C12 C 0 1 Y N N N N N 157.559 131.023 122.116 2.910 -2.225 0.469 C11 YFU 20 YFU C12 C13 C 0 1 Y N N N N N 158.624 129.948 122.006 2.074 -2.652 1.505 C12 YFU 21 YFU C13 C14 C 0 1 Y N N N N N 158.871 129.171 123.046 0.710 -2.596 1.353 C13 YFU 22 YFU C14 C15 C 0 1 Y N N N N N 158.120 129.367 124.348 0.152 -2.115 0.169 C14 YFU 23 YFU C15 C16 C 0 1 N N N N N N 158.359 128.671 125.282 -1.313 -2.012 0.010 C15 YFU 24 YFU C16 C17 C 0 1 N N N N N N 157.914 127.176 127.082 -3.253 -0.728 -0.741 C16 YFU 25 YFU C17 C18 C 0 1 N N N N N N 157.968 125.642 126.895 -3.963 -0.237 0.495 C17 YFU 26 YFU C18 C19 C 0 1 N N S N N N 157.463 124.827 125.813 -5.455 -0.025 0.473 C18 YFU 27 YFU C19 C20 C 0 1 N N N N N N 157.724 122.948 124.579 -7.422 0.045 1.863 C19 YFU 28 YFU C20 C21 C 0 1 Y N N N N N 156.345 122.721 124.431 -7.996 1.050 0.899 C20 YFU 29 YFU C21 C22 C 0 1 Y N N N N N 155.769 121.854 123.287 -9.329 1.408 1.034 C21 YFU 30 YFU C23 C23 C 0 1 Y N N N N N 153.595 122.278 124.158 -9.134 2.885 -0.836 C23 YFU 31 YFU C24 C24 C 0 1 Y N N N N N 154.065 123.005 125.112 -7.806 2.531 -0.971 C24 YFU 32 YFU C25 C25 C 0 1 Y N N N N N 155.585 123.230 125.241 -7.234 1.613 -0.102 C25 YFU 33 YFU C26 C26 C 0 1 N N N N N N 156.174 124.106 126.367 -5.779 1.265 -0.281 C26 YFU 34 YFU C27 C27 C 0 1 N N N N N N 156.387 128.025 125.883 -0.922 0.281 -0.692 C27 YFU 35 YFU C28 C28 C 0 1 N N N N N N 155.916 129.034 126.762 -0.116 0.089 -1.968 C28 YFU 36 YFU C29 C29 C 0 1 N N N N N N 156.073 131.718 126.518 -0.602 -2.207 -2.541 C29 YFU 37 YFU C30 C30 C 0 1 N N N N N N 154.718 131.404 127.148 -0.882 -1.953 -4.023 C30 YFU 38 YFU C31 C31 C 0 1 Y N N N N N 157.237 130.301 124.430 0.988 -1.704 -0.879 C31 YFU 39 YFU C32 C32 C 0 1 Y N N N N N 156.917 131.200 123.247 2.365 -1.751 -0.722 C32 YFU 40 YFU H1 H1 H 0 1 N N N N N N 154.105 121.041 122.385 -10.936 2.595 0.278 H1 YFU 41 YFU H2 H2 H 0 1 N N N N N N 157.164 129.384 120.189 4.914 0.077 -1.352 H2 YFU 42 YFU H3 H3 H 0 1 N N N N N N 155.925 129.700 118.927 3.441 -0.165 -0.377 H3 YFU 43 YFU H4 H4 H 0 1 N N N N N N 158.972 129.777 118.640 4.537 2.098 -0.039 H4 YFU 44 YFU H5 H5 H 0 1 N N N N N N 157.811 128.699 117.794 4.372 1.145 1.457 H5 YFU 45 YFU H7 H7 H 0 1 N N N N N N 159.229 124.099 125.141 -5.563 -0.614 2.445 H7 YFU 46 YFU H9 H9 H 0 1 N N N N N N 159.032 129.599 115.379 8.191 1.335 -0.572 H9 YFU 47 YFU H10 H10 H 0 1 N N N N N N 158.598 131.278 114.912 6.629 1.447 -1.494 H10 YFU 48 YFU H14 H14 H 0 1 N N N N N N 156.879 128.909 115.163 6.072 3.601 -0.468 H14 YFU 49 YFU H15 H15 H 0 1 N N N N N N 155.449 130.263 112.345 8.795 5.860 -0.680 H15 YFU 50 YFU H16 H16 H 0 1 N N N N N N 156.774 129.164 112.855 7.241 5.416 -1.426 H16 YFU 51 YFU H17 H17 H 0 1 N N N N N N 155.169 129.066 113.654 7.331 5.728 0.324 H17 YFU 52 YFU H18 H18 H 0 1 N N N N N N 155.756 129.561 117.023 6.097 3.076 1.927 H18 YFU 53 YFU H19 H19 H 0 1 N N N N N N 155.611 131.244 116.411 7.814 2.488 1.849 H19 YFU 54 YFU H20 H20 H 0 1 N N N N N N 158.853 132.228 118.245 8.026 0.102 1.454 H20 YFU 55 YFU H21 H21 H 0 1 N N N N N N 157.912 132.861 116.852 6.510 -0.078 2.372 H21 YFU 56 YFU H22 H22 H 0 1 N N N N N N 155.771 132.155 118.064 6.859 -2.120 1.086 H22 YFU 57 YFU H23 H23 H 0 1 N N N N N N 156.709 133.374 118.992 7.117 -1.184 -0.409 H23 YFU 58 YFU H24 H24 H 0 1 N N N N N N 159.175 129.819 121.086 2.503 -3.028 2.422 H24 YFU 59 YFU H25 H25 H 0 1 N N N N N N 159.613 128.391 122.968 0.063 -2.923 2.153 H25 YFU 60 YFU H26 H26 H 0 1 N N N N N N 158.932 127.507 127.335 -3.407 -0.018 -1.554 H26 YFU 61 YFU H27 H27 H 0 1 N N N N N N 157.243 127.375 127.930 -3.654 -1.701 -1.028 H27 YFU 62 YFU H28 H28 H 0 1 N N N N N N 157.217 125.421 124.921 -5.940 -0.868 -0.019 H28 YFU 63 YFU H29 H29 H 0 1 N N N N N N 158.043 123.352 123.607 -7.747 -0.956 1.578 H29 YFU 64 YFU H30 H30 H 0 1 N N N N N N 158.155 121.946 124.720 -7.782 0.264 2.869 H30 YFU 65 YFU H31 H31 H 0 1 N N N N N N 156.439 121.408 122.567 -9.926 0.969 1.820 H31 YFU 66 YFU H32 H32 H 0 1 N N N N N N 152.529 122.125 124.076 -9.575 3.600 -1.515 H32 YFU 67 YFU H33 H33 H 0 1 N N N N N N 153.392 123.459 125.824 -7.210 2.970 -1.757 H33 YFU 68 YFU H34 H34 H 0 1 N N N N N N 156.442 123.475 127.227 -5.162 2.076 0.107 H34 YFU 69 YFU H35 H35 H 0 1 N N N N N N 155.433 124.857 126.680 -5.568 1.127 -1.341 H35 YFU 70 YFU H36 H36 H 0 1 N N N N N N 156.083 128.253 124.851 -1.512 1.194 -0.775 H36 YFU 71 YFU H37 H37 H 0 1 N N N N N N 155.979 127.047 126.178 -0.239 0.371 0.153 H37 YFU 72 YFU H38 H38 H 0 1 N N N N N N 154.822 128.994 126.871 0.709 0.801 -1.977 H38 YFU 73 YFU H39 H39 H 0 1 N N N N N N 156.386 128.955 127.753 -0.759 0.281 -2.827 H39 YFU 74 YFU H40 H40 H 0 1 N N N N N N 156.808 132.033 127.273 -0.247 -3.229 -2.408 H40 YFU 75 YFU H41 H41 H 0 1 N N N N N N 155.990 132.493 125.742 -1.519 -2.064 -1.968 H41 YFU 76 YFU H42 H42 H 0 1 N N N N N N 154.320 132.308 127.633 -1.238 -0.931 -4.156 H42 YFU 77 YFU H43 H43 H 0 1 N N N N N N 154.019 131.069 126.367 0.034 -2.096 -4.596 H43 YFU 78 YFU H44 H44 H 0 1 N N N N N N 154.838 130.609 127.898 -1.643 -2.650 -4.374 H44 YFU 79 YFU H46 H46 H 0 1 N N N N N N 156.170 131.975 123.336 3.013 -1.421 -1.521 H46 YFU 80 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YFU C22 C21 DOUB Y N 1 YFU C22 C23 SING Y N 2 YFU C1 N1 SING N N 3 YFU C1 C2 SING N N 4 YFU N1 C9 SING N N 5 YFU N1 C10 SING N N 6 YFU O1 C5 SING N N 7 YFU O1 C6 SING N N 8 YFU C2 C3 SING N N 9 YFU N2 C15 SING N N 10 YFU N2 C16 SING N N 11 YFU N2 C27 SING N N 12 YFU O2 C10 DOUB N N 13 YFU C3 C7 SING N N 14 YFU C3 C8 SING N N 15 YFU N3 C18 SING N N 16 YFU N3 C19 SING N N 17 YFU O3 C15 DOUB N N 18 YFU C4 C5 SING N N 19 YFU N4 C29 SING N N 20 YFU O4 C17 DOUB N N 21 YFU C5 C7 SING N N 22 YFU C8 C9 SING N N 23 YFU C10 C11 SING N N 24 YFU C11 C12 DOUB Y N 25 YFU C11 C32 SING Y N 26 YFU C12 C13 SING Y N 27 YFU C13 C14 DOUB Y N 28 YFU C14 C15 SING N N 29 YFU C14 C31 SING Y N 30 YFU C16 C17 SING N N 31 YFU C17 C18 SING N N 32 YFU C18 C26 SING N N 33 YFU C19 C20 SING N N 34 YFU C20 C21 SING Y N 35 YFU C20 C25 DOUB Y N 36 YFU C23 C24 DOUB Y N 37 YFU C24 C25 SING Y N 38 YFU C25 C26 SING N N 39 YFU C27 C28 SING N N 40 YFU C29 C30 SING N N 41 YFU C31 C32 DOUB Y N 42 YFU C28 N4 SING N N 43 YFU C22 H1 SING N N 44 YFU C1 H2 SING N N 45 YFU C1 H3 SING N N 46 YFU C2 H4 SING N N 47 YFU C2 H5 SING N N 48 YFU N3 H7 SING N N 49 YFU C4 H9 SING N N 50 YFU C4 H10 SING N N 51 YFU C5 H14 SING N N 52 YFU C6 H15 SING N N 53 YFU C6 H16 SING N N 54 YFU C6 H17 SING N N 55 YFU C7 H18 SING N N 56 YFU C7 H19 SING N N 57 YFU C8 H20 SING N N 58 YFU C8 H21 SING N N 59 YFU C9 H22 SING N N 60 YFU C9 H23 SING N N 61 YFU C12 H24 SING N N 62 YFU C13 H25 SING N N 63 YFU C16 H26 SING N N 64 YFU C16 H27 SING N N 65 YFU C18 H28 SING N N 66 YFU C19 H29 SING N N 67 YFU C19 H30 SING N N 68 YFU C21 H31 SING N N 69 YFU C23 H32 SING N N 70 YFU C24 H33 SING N N 71 YFU C26 H34 SING N N 72 YFU C26 H35 SING N N 73 YFU C27 H36 SING N N 74 YFU C27 H37 SING N N 75 YFU C28 H38 SING N N 76 YFU C28 H39 SING N N 77 YFU C29 H40 SING N N 78 YFU C29 H41 SING N N 79 YFU C30 H42 SING N N 80 YFU C30 H43 SING N N 81 YFU C30 H44 SING N N 82 YFU C32 H46 SING N N 83 YFU C3 C4 SING N N 84 YFU N4 C31 SING N N 85 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YFU InChI InChI 1.06 "InChI=1S/C32H40N4O4/c1-3-34-14-15-36(21-29(37)27-16-22-6-4-5-7-24(22)20-33-27)31(39)26-9-8-23(17-28(26)34)30(38)35-12-10-32(11-13-35)18-25(19-32)40-2/h4-9,17,25,27,33H,3,10-16,18-21H2,1-2H3/t27-/m0/s1" YFU InChIKey InChI 1.06 QIAGGSLHFCTYMT-MHZLTWQESA-N YFU SMILES_CANONICAL CACTVS 3.385 "CCN1CCN(CC(=O)[C@@H]2Cc3ccccc3CN2)C(=O)c4ccc(cc14)C(=O)N5CCC6(CC5)CC(C6)OC" YFU SMILES CACTVS 3.385 "CCN1CCN(CC(=O)[CH]2Cc3ccccc3CN2)C(=O)c4ccc(cc14)C(=O)N5CCC6(CC5)CC(C6)OC" YFU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCN1CCN(C(=O)c2c1cc(cc2)C(=O)N3CCC4(CC3)CC(C4)OC)CC(=O)[C@@H]5Cc6ccccc6CN5" YFU SMILES "OpenEye OEToolkits" 2.0.7 "CCN1CCN(C(=O)c2c1cc(cc2)C(=O)N3CCC4(CC3)CC(C4)OC)CC(=O)C5Cc6ccccc6CN5" # _pdbx_chem_comp_identifier.comp_id YFU _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-ethyl-8-[(2-methoxy-7-azaspiro[3.5]nonan-7-yl)carbonyl]-4-[2-oxidanylidene-2-[(3~{S})-1,2,3,4-tetrahydroisoquinolin-3-yl]ethyl]-2,3-dihydro-1,4-benzodiazepin-5-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YFU "Create component" 2023-11-30 PDBJ YFU "Initial release" 2025-02-26 RCSB #