data_YFX # _chem_comp.id YFX _chem_comp.name "[2-fluoro-4-(2,2,2-trifluoroethoxy)phenyl]methyl 2-[(5S)-4,5,6,7-tetrahydro-1H-benzotriazole-5-carbonyl]-2,7-diazaspiro[3.5]nonane-7-carboxylate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H27 F4 N5 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-13 _chem_comp.pdbx_modified_date 2024-12-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 525.496 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YFX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7G59 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YFX C10 C1 C 0 1 N N N N N N -11.485 12.682 51.615 5.789 -0.845 -1.617 C10 YFX 1 YFX C11 C2 C 0 1 N N S N N N -10.762 11.773 52.648 6.832 -1.130 -0.568 C11 YFX 2 YFX O12 O1 O 0 1 N N N N N N -11.279 13.885 51.544 6.127 -0.585 -2.753 O12 YFX 3 YFX C13 C3 C 0 1 N N N N N N -9.205 11.995 52.564 8.226 -1.029 -1.193 C13 YFX 4 YFX C15 C4 C 0 1 N N N N N N -11.331 12.038 54.085 6.705 -0.110 0.571 C15 YFX 5 YFX C16 C5 C 0 1 Y N N N N N -10.497 11.268 55.048 7.901 -0.256 1.474 C16 YFX 6 YFX C17 C6 C 0 1 Y N N N N N -9.167 10.819 54.787 9.041 -0.903 1.129 C17 YFX 7 YFX C21 C7 C 0 1 N N N N N N -15.251 7.500 47.694 -0.629 2.200 -0.576 C21 YFX 8 YFX C23 C8 C 0 1 N N N N N N -14.792 5.710 46.064 -2.910 2.543 0.036 C23 YFX 9 YFX C25 C9 C 0 1 Y N N N N N -13.623 5.374 45.164 -4.196 1.767 0.154 C25 YFX 10 YFX C26 C10 C 0 1 Y N N N N N -12.983 4.135 45.382 -5.352 2.405 0.572 C26 YFX 11 YFX C27 C11 C 0 1 Y N N N N N -11.907 3.698 44.552 -6.534 1.694 0.681 C27 YFX 12 YFX C28 C12 C 0 1 Y N N N N N -11.561 4.556 43.451 -6.559 0.342 0.371 C28 YFX 13 YFX C1 C13 C 0 1 N N N N N N -12.850 10.642 50.596 3.209 -0.672 -2.004 C1 YFX 14 YFX N2 N1 N 0 1 N N N N N N -12.426 12.086 50.698 4.481 -0.882 -1.294 N2 YFX 15 YFX C3 C14 C 0 1 N N N N N N -13.286 12.579 49.590 3.698 -1.153 -0.078 C3 YFX 16 YFX C4 C15 C 0 1 N N N N N N -13.663 11.054 49.333 2.593 -0.272 -0.663 C4 YFX 17 YFX C5 C16 C 0 1 N N N N N N -13.267 8.949 48.058 1.736 2.013 -1.171 C5 YFX 18 YFX C6 C17 C 0 1 N N N N N N -13.043 10.458 48.034 2.736 1.210 -0.329 C6 YFX 19 YFX C7 C18 C 0 1 N N N N N N -15.159 10.737 49.449 1.183 -0.810 -0.440 C7 YFX 20 YFX C8 C19 C 0 1 N N N N N N -15.343 9.237 49.470 0.195 0.007 -1.281 C8 YFX 21 YFX N9 N2 N 0 1 N N N N N N -14.748 8.704 48.218 0.398 1.434 -0.994 N9 YFX 22 YFX C14 C20 C 0 1 N N N N N N -8.382 11.073 53.529 9.273 -1.561 -0.206 C14 YFX 23 YFX N18 N3 N 0 1 Y N N N N N -8.800 10.125 55.955 9.862 -0.821 2.190 N18 YFX 24 YFX N19 N4 N 0 1 Y N N N N N -9.835 10.157 56.856 9.251 -0.162 3.116 N19 YFX 25 YFX N20 N5 N 0 1 Y N N N N N -10.845 10.831 56.346 8.076 0.189 2.714 N20 YFX 26 YFX O22 O2 O 0 1 N N N N N N -14.322 6.765 46.930 -1.851 1.659 -0.418 O22 YFX 27 YFX O24 O3 O 0 1 N N N N N N -16.393 7.124 47.928 -0.451 3.379 -0.342 O24 YFX 28 YFX C29 C21 C 0 1 Y N N N N N -12.181 5.767 43.265 -5.399 -0.293 -0.048 C29 YFX 29 YFX C30 C22 C 0 1 Y N N N N N -13.175 6.169 44.129 -4.222 0.421 -0.161 C30 YFX 30 YFX O31 O4 O 0 1 N N N N N N -10.538 4.137 42.649 -7.719 -0.359 0.477 O31 YFX 31 YFX C32 C23 C 0 1 N N N N N N -9.838 3.053 43.149 -7.671 -1.747 0.142 C32 YFX 32 YFX C33 C24 C 0 1 N N N N N N -10.307 1.828 42.286 -9.059 -2.364 0.321 C33 YFX 33 YFX F34 F1 F 0 1 N N N N N N -10.453 2.058 40.950 -9.971 -1.712 -0.517 F34 YFX 34 YFX F35 F2 F 0 1 N N N N N N -9.371 0.851 42.422 -9.012 -3.723 -0.007 F35 YFX 35 YFX F36 F3 F 0 1 N N N N N N -11.466 1.355 42.751 -9.465 -2.220 1.653 F36 YFX 36 YFX F37 F4 F 0 1 N N N N N N -13.483 3.358 46.377 -5.326 3.721 0.874 F37 YFX 37 YFX H50 H1 H 0 1 N N N N N N -10.970 10.725 52.388 6.684 -2.135 -0.173 H50 YFX 38 YFX H52 H2 H 0 1 N N N N N N -8.881 11.794 51.532 8.257 -1.620 -2.109 H52 YFX 39 YFX H51 H3 H 0 1 N N N N N N -8.990 13.043 52.818 8.444 0.013 -1.427 H51 YFX 40 YFX H55 H4 H 0 1 N N N N N N -11.278 13.112 54.317 6.676 0.899 0.159 H55 YFX 41 YFX H56 H5 H 0 1 N N N N N N -12.377 11.702 54.142 5.793 -0.303 1.136 H56 YFX 42 YFX H58 H6 H 0 1 N N N N N N -15.087 4.830 46.655 -3.039 3.353 -0.682 H58 YFX 43 YFX H59 H7 H 0 1 N N N N N N -15.649 6.056 45.468 -2.645 2.958 1.008 H59 YFX 44 YFX H60 H8 H 0 1 N N N N N N -11.381 2.774 44.741 -7.436 2.190 1.008 H60 YFX 45 YFX H39 H9 H 0 1 N N N N N N -12.030 9.934 50.405 3.245 0.144 -2.726 H39 YFX 46 YFX H38 H10 H 0 1 N N N N N N -13.459 10.280 51.438 2.787 -1.586 -2.421 H38 YFX 47 YFX H40 H11 H 0 1 N N N N N N -14.126 13.216 49.905 3.409 -2.198 0.029 H40 YFX 48 YFX H41 H12 H 0 1 N N N N N N -12.744 13.067 48.766 4.147 -0.744 0.827 H41 YFX 49 YFX H43 H13 H 0 1 N N N N N N -12.914 8.503 47.116 1.731 3.052 -0.840 H43 YFX 50 YFX H42 H14 H 0 1 N N N N N N -12.721 8.503 48.902 2.021 1.964 -2.222 H42 YFX 51 YFX H45 H15 H 0 1 N N N N N N -13.533 10.895 47.151 2.530 1.367 0.729 H45 YFX 52 YFX H44 H16 H 0 1 N N N N N N -11.965 10.676 48.000 3.750 1.538 -0.557 H44 YFX 53 YFX H46 H17 H 0 1 N N N N N N -15.557 11.171 50.378 1.141 -1.856 -0.743 H46 YFX 54 YFX H47 H18 H 0 1 N N N N N N -15.694 11.162 48.587 0.922 -0.724 0.614 H47 YFX 55 YFX H48 H19 H 0 1 N N N N N N -14.831 8.807 50.343 0.372 -0.182 -2.340 H48 YFX 56 YFX H49 H20 H 0 1 N N N N N N -16.414 8.989 49.514 -0.826 -0.275 -1.023 H49 YFX 57 YFX H54 H21 H 0 1 N N N N N N -8.174 10.115 53.029 9.168 -2.641 -0.106 H54 YFX 58 YFX H53 H22 H 0 1 N N N N N N -7.433 11.567 53.785 10.273 -1.320 -0.565 H53 YFX 59 YFX H57 H23 H 0 1 N N N N N N -7.919 9.677 56.106 10.756 -1.193 2.250 H57 YFX 60 YFX H61 H24 H 0 1 N N N N N N -11.889 6.403 42.442 -5.417 -1.346 -0.289 H61 YFX 61 YFX H62 H25 H 0 1 N N N N N N -13.621 7.143 43.991 -3.321 -0.073 -0.491 H62 YFX 62 YFX H64 H26 H 0 1 N N N N N N -8.755 3.210 43.040 -7.355 -1.859 -0.896 H64 YFX 63 YFX H63 H27 H 0 1 N N N N N N -10.081 2.893 44.210 -6.960 -2.254 0.794 H63 YFX 64 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YFX C1 N2 SING N N 1 YFX C1 C4 SING N N 2 YFX N2 C3 SING N N 3 YFX N2 C10 SING N N 4 YFX C3 C4 SING N N 5 YFX C4 C6 SING N N 6 YFX C4 C7 SING N N 7 YFX C5 C6 SING N N 8 YFX C5 N9 SING N N 9 YFX C7 C8 SING N N 10 YFX C8 N9 SING N N 11 YFX N9 C21 SING N N 12 YFX C10 C11 SING N N 13 YFX C10 O12 DOUB N N 14 YFX C11 C13 SING N N 15 YFX C11 C15 SING N N 16 YFX C13 C14 SING N N 17 YFX C14 C17 SING N N 18 YFX C15 C16 SING N N 19 YFX C16 C17 DOUB Y N 20 YFX C16 N20 SING Y N 21 YFX C17 N18 SING Y N 22 YFX N18 N19 SING Y N 23 YFX N19 N20 DOUB Y N 24 YFX C21 O22 SING N N 25 YFX C21 O24 DOUB N N 26 YFX O22 C23 SING N N 27 YFX C23 C25 SING N N 28 YFX C25 C26 DOUB Y N 29 YFX C25 C30 SING Y N 30 YFX C26 C27 SING Y N 31 YFX C26 F37 SING N N 32 YFX C27 C28 DOUB Y N 33 YFX C28 C29 SING Y N 34 YFX C28 O31 SING N N 35 YFX C29 C30 DOUB Y N 36 YFX O31 C32 SING N N 37 YFX C32 C33 SING N N 38 YFX C33 F34 SING N N 39 YFX C33 F35 SING N N 40 YFX C33 F36 SING N N 41 YFX C11 H50 SING N N 42 YFX C13 H52 SING N N 43 YFX C13 H51 SING N N 44 YFX C15 H55 SING N N 45 YFX C15 H56 SING N N 46 YFX C23 H58 SING N N 47 YFX C23 H59 SING N N 48 YFX C27 H60 SING N N 49 YFX C1 H39 SING N N 50 YFX C1 H38 SING N N 51 YFX C3 H40 SING N N 52 YFX C3 H41 SING N N 53 YFX C5 H43 SING N N 54 YFX C5 H42 SING N N 55 YFX C6 H45 SING N N 56 YFX C6 H44 SING N N 57 YFX C7 H46 SING N N 58 YFX C7 H47 SING N N 59 YFX C8 H48 SING N N 60 YFX C8 H49 SING N N 61 YFX C14 H54 SING N N 62 YFX C14 H53 SING N N 63 YFX N18 H57 SING N N 64 YFX C29 H61 SING N N 65 YFX C30 H62 SING N N 66 YFX C32 H64 SING N N 67 YFX C32 H63 SING N N 68 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YFX SMILES ACDLabs 12.01 "FC(F)(F)COc1ccc(COC(=O)N2CCC3(CC2)CN(C3)C(=O)C2CCc3[NH]nnc3C2)c(F)c1" YFX InChI InChI 1.06 "InChI=1S/C24H27F4N5O4/c25-18-10-17(37-14-24(26,27)28)3-1-16(18)11-36-22(35)32-7-5-23(6-8-32)12-33(13-23)21(34)15-2-4-19-20(9-15)30-31-29-19/h1,3,10,15H,2,4-9,11-14H2,(H,29,30,31)" YFX InChIKey InChI 1.06 HFJGRHYPTCNSKW-UHFFFAOYSA-N YFX SMILES_CANONICAL CACTVS 3.385 "Fc1cc(OCC(F)(F)F)ccc1COC(=O)N2CCC3(CC2)CN(C3)C(=O)[C@H]4CCc5[nH]nnc5C4" YFX SMILES CACTVS 3.385 "Fc1cc(OCC(F)(F)F)ccc1COC(=O)N2CCC3(CC2)CN(C3)C(=O)[CH]4CCc5[nH]nnc5C4" YFX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1OCC(F)(F)F)F)COC(=O)N2CCC3(CC2)CN(C3)C(=O)[C@H]4CCc5c(nn[nH]5)C4" YFX SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1OCC(F)(F)F)F)COC(=O)N2CCC3(CC2)CN(C3)C(=O)C4CCc5c(nn[nH]5)C4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YFX "SYSTEMATIC NAME" ACDLabs 12.01 "[2-fluoro-4-(2,2,2-trifluoroethoxy)phenyl]methyl 2-[(5S)-4,5,6,7-tetrahydro-1H-benzotriazole-5-carbonyl]-2,7-diazaspiro[3.5]nonane-7-carboxylate" YFX "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[2-fluoranyl-4-[2,2,2-tris(fluoranyl)ethoxy]phenyl]methyl 2-[[(5~{S})-4,5,6,7-tetrahydro-1~{H}-benzotriazol-5-yl]carbonyl]-2,7-diazaspiro[3.5]nonane-7-carboxylate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YFX "Create component" 2023-06-13 RCSB YFX "Initial release" 2024-12-18 RCSB #