data_YFZ # _chem_comp.id YFZ _chem_comp.name "(-)-Galantinic acid" _chem_comp.type "peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C7 H15 N O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(3S,5S,6S)-6-azanyl-3,5,7-tris(oxidanyl)heptanoic acid; Galantinic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-12-04 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 193.198 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YFZ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8R6C _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YFZ C C1 C 0 1 N N N N Y Y 254.937 186.338 238.176 3.657 0.158 -0.076 C YFZ 1 YFZ CA C2 C 0 1 N N N N Y N 255.256 187.323 239.277 2.359 0.813 0.319 CA YFZ 2 YFZ CB C3 C 0 1 N N S N Y N 254.041 187.569 240.154 1.201 -0.153 0.062 CB YFZ 3 YFZ O O1 O 0 1 N N N N Y Y 254.096 186.626 237.331 3.655 -0.965 -0.523 O YFZ 4 YFZ CG C4 C 0 1 N N N N Y N 254.340 188.434 241.364 -0.126 0.554 0.345 CG YFZ 5 YFZ CZ C5 C 0 1 N N N N N N 252.356 189.230 244.572 -3.771 -0.637 -0.007 CZ YFZ 6 YFZ CD C6 C 0 1 N N S N Y N 253.135 188.650 242.268 -1.287 -0.369 -0.030 CD YFZ 7 YFZ CE C7 C 0 1 N N S N Y N 253.502 189.340 243.590 -2.610 0.287 0.368 CE YFZ 8 YFZ O3 O2 O 0 1 N N N N N N 252.170 189.435 241.568 -1.275 -0.600 -1.440 O3 YFZ 9 YFZ O2 O3 O 0 1 N N N N N N 253.563 186.304 240.602 1.328 -1.288 0.921 O2 YFZ 10 YFZ N N1 N 0 1 N N N Y Y N 253.872 190.741 243.354 -2.754 1.567 -0.339 N YFZ 11 YFZ OH O4 O 0 1 N N N N N N 252.809 189.381 245.908 -4.997 -0.078 0.468 OH YFZ 12 YFZ HA1 H2 H 0 1 N N N N Y N 256.071 186.920 239.896 2.389 1.071 1.378 HA1 YFZ 13 YFZ HA2 H3 H 0 1 N N N N Y N 255.574 188.275 238.827 2.214 1.718 -0.271 HA2 YFZ 14 YFZ HB H4 H 0 1 N N N N Y N 253.268 188.067 239.550 1.224 -0.480 -0.977 HB YFZ 15 YFZ HG1 H5 H 0 1 N N N N Y N 255.133 187.949 241.951 -0.187 0.802 1.405 HG1 YFZ 16 YFZ HG2 H6 H 0 1 N N N N Y N 254.692 189.415 241.012 -0.184 1.469 -0.245 HG2 YFZ 17 YFZ HZ1 H7 H 0 1 N N N N N N 251.618 190.016 244.352 -3.816 -0.742 -1.091 HZ1 YFZ 18 YFZ HZ2 H8 H 0 1 N N N N N N 251.883 188.243 244.463 -3.618 -1.616 0.447 HZ2 YFZ 19 YFZ HD H9 H 0 1 N N N N Y N 252.704 187.666 242.506 -1.180 -1.319 0.495 HD YFZ 20 YFZ HE H10 H 0 1 N N N N Y N 254.369 188.813 244.016 -2.619 0.463 1.444 HE YFZ 21 YFZ HO3 H11 H 0 1 N N N N N N 251.413 189.576 242.124 -1.366 0.203 -1.971 HO3 YFZ 22 YFZ HO2 H12 H 0 1 N N N N N N 252.801 186.431 241.154 1.315 -1.072 1.863 HO2 YFZ 23 YFZ H H13 H 0 1 N N N Y Y N 254.108 191.175 244.224 -2.036 2.217 -0.059 H YFZ 24 YFZ H2 H14 H 0 1 N Y N Y Y N 254.659 190.779 242.739 -2.749 1.430 -1.339 H2 YFZ 25 YFZ H1 H16 H 0 1 N N N N N N 252.072 189.308 246.503 -5.778 -0.612 0.265 H1 YFZ 26 YFZ OXT O5 O 0 1 N Y N N Y Y ? ? ? 4.814 0.823 0.063 OXT YFZ 27 YFZ HXT H1 H 0 1 N Y N N Y Y ? ? ? 5.621 0.362 -0.204 HXT YFZ 28 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YFZ O C DOUB N N 1 YFZ C CA SING N N 2 YFZ CA CB SING N N 3 YFZ CB O2 SING N N 4 YFZ CB CG SING N N 5 YFZ CG CD SING N N 6 YFZ O3 CD SING N N 7 YFZ CD CE SING N N 8 YFZ N CE SING N N 9 YFZ CE CZ SING N N 10 YFZ CZ OH SING N N 11 YFZ CA HA1 SING N N 12 YFZ CA HA2 SING N N 13 YFZ CB HB SING N N 14 YFZ CG HG1 SING N N 15 YFZ CG HG2 SING N N 16 YFZ CZ HZ1 SING N N 17 YFZ CZ HZ2 SING N N 18 YFZ CD HD SING N N 19 YFZ CE HE SING N N 20 YFZ O3 HO3 SING N N 21 YFZ O2 HO2 SING N N 22 YFZ N H SING N N 23 YFZ N H2 SING N N 24 YFZ OH H1 SING N N 25 YFZ C OXT SING N N 26 YFZ OXT HXT SING N N 27 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YFZ InChI InChI 1.06 "InChI=1S/C7H15NO5/c8-5(3-9)6(11)1-4(10)2-7(12)13/h4-6,9-11H,1-3,8H2,(H,12,13)/t4-,5-,6-/m0/s1" YFZ InChIKey InChI 1.06 ISCLAUVNBIFWBC-ZLUOBGJFSA-N YFZ SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CO)[C@@H](O)C[C@H](O)CC(O)=O" YFZ SMILES CACTVS 3.385 "N[CH](CO)[CH](O)C[CH](O)CC(O)=O" YFZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C([C@@H](CC(=O)O)O)[C@@H]([C@H](CO)N)O" YFZ SMILES "OpenEye OEToolkits" 2.0.7 "C(C(CC(=O)O)O)C(C(CO)N)O" # _pdbx_chem_comp_identifier.comp_id YFZ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(3~{S},5~{S},6~{S})-6-azanyl-3,5,7-tris(oxidanyl)heptanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YFZ "Create component" 2023-12-04 PDBE YFZ "Modify backbone" 2024-01-15 PDBE YFZ "Modify leaving atom flag" 2024-01-15 PDBE YFZ "Modify linking type" 2024-01-15 PDBE YFZ "Modify name" 2024-01-15 PDBE YFZ "Initial release" 2024-07-24 RCSB YFZ "Modify PCM" 2024-09-27 PDBE # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 YFZ "(3S,5S,6S)-6-azanyl-3,5,7-tris(oxidanyl)heptanoic acid" PDB ? 2 YFZ "Galantinic acid" PUBCHEM ? # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id YFZ _pdbx_chem_comp_pcm.modified_residue_id ? _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Non-standard residue" _pdbx_chem_comp_pcm.position "Amino-acid side chain and backbone" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #