data_YG2 # _chem_comp.id YG2 _chem_comp.name "[(3aR,6aS)-5-(1H-benzotriazole-5-carbonyl)hexahydropyrrolo[3,4-c]pyrrol-2(1H)-yl][4-(2,2,2-trifluoroethoxy)quinolin-2-yl]methanone" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H21 F3 N6 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-13 _chem_comp.pdbx_modified_date 2024-12-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 510.468 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YG2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7G5U _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YG2 C11 C1 C 0 1 N N N N N N -11.449 12.435 52.712 5.287 1.858 0.249 C11 YG2 1 YG2 C15 C2 C 0 1 Y N N N N N -8.362 10.547 53.733 6.105 -1.760 0.768 C15 YG2 2 YG2 C16 C3 C 0 1 Y N N N N N -9.140 13.328 53.349 7.363 0.559 -0.149 C16 YG2 3 YG2 C17 C4 C 0 1 Y N N N N N -7.816 12.958 53.772 8.068 -0.648 -0.127 C17 YG2 4 YG2 C18 C5 C 0 1 Y N N N N N -7.446 11.580 53.963 7.428 -1.813 0.336 C18 YG2 5 YG2 C22 C6 C 0 1 N N N N N N -14.193 8.731 47.483 -1.808 1.843 -0.187 C22 YG2 6 YG2 C23 C7 C 0 1 Y N N N N N -13.410 8.196 46.286 -2.549 0.559 -0.155 C23 YG2 7 YG2 C26 C8 C 0 1 Y N N N N N -12.716 6.325 44.933 -4.645 -0.613 -0.034 C26 YG2 8 YG2 C27 C9 C 0 1 Y N N N N N -13.418 6.777 46.051 -3.946 0.579 -0.064 C27 YG2 9 YG2 C28 C10 C 0 1 Y N N N N N -12.049 7.220 44.040 -3.908 -1.817 -0.098 C28 YG2 10 YG2 N1 N1 N 0 1 N N N N N N -11.921 12.072 51.464 3.964 1.852 -0.005 N1 YG2 11 YG2 C2 C11 C 0 1 N N N N N N -11.086 11.508 50.348 3.088 3.057 -0.157 C2 YG2 12 YG2 C3 C12 C 0 1 N N N N N N -13.364 12.157 51.076 3.109 0.641 -0.192 C3 YG2 13 YG2 C4 C13 C 0 1 N N S N N N -13.345 10.749 50.479 1.781 1.180 -0.617 C4 YG2 14 YG2 C5 C14 C 0 1 N N S N N N -12.235 11.046 49.433 1.726 2.519 0.224 C5 YG2 15 YG2 C6 C15 C 0 1 N N N N N N -12.236 9.825 48.540 0.419 3.051 -0.323 C6 YG2 16 YG2 N7 N2 N 0 1 N N N N N N -13.678 9.508 48.499 -0.463 1.842 -0.280 N7 YG2 17 YG2 C8 C16 C 0 1 N N N N N N -14.442 10.063 49.661 0.414 0.636 -0.359 C8 YG2 18 YG2 C12 C17 C 0 1 Y N N N N N -10.006 12.271 53.118 6.041 0.588 0.275 C12 YG2 19 YG2 O13 O1 O 0 1 N N N N N N -12.275 12.851 53.527 5.862 2.910 0.452 O13 YG2 20 YG2 C14 C18 C 0 1 Y N N N N N -9.619 10.911 53.327 5.421 -0.582 0.739 C14 YG2 21 YG2 N19 N3 N 0 1 Y N N N N N -6.099 11.600 54.390 8.356 -2.820 0.241 N19 YG2 22 YG2 N20 N4 N 0 1 Y N N N N N -5.695 12.894 54.431 9.525 -2.243 -0.274 N20 YG2 23 YG2 N21 N5 N 0 1 Y N N N N N -6.652 13.717 54.083 9.331 -0.987 -0.477 N21 YG2 24 YG2 O24 O2 O 0 1 N N N N N N -15.410 8.488 47.516 -2.412 2.895 -0.129 O24 YG2 25 YG2 N25 N6 N 0 1 Y N N N N N -12.802 9.086 45.474 -1.877 -0.575 -0.219 N25 YG2 26 YG2 C29 C19 C 0 1 Y N N N N N -12.113 8.605 44.371 -2.495 -1.756 -0.195 C29 YG2 27 YG2 C30 C20 C 0 1 Y N N N N N -11.464 9.578 43.530 -1.763 -2.957 -0.258 C30 YG2 28 YG2 C31 C21 C 0 1 Y N N N N N -10.771 9.122 42.416 -2.417 -4.149 -0.227 C31 YG2 29 YG2 C32 C22 C 0 1 Y N N N N N -10.699 7.730 42.087 -3.806 -4.205 -0.132 C32 YG2 30 YG2 C33 C23 C 0 1 Y N N N N N -11.319 6.796 42.876 -4.549 -3.065 -0.069 C33 YG2 31 YG2 O34 O3 O 0 1 N N N N N N -12.593 5.014 44.557 -5.998 -0.627 0.059 O34 YG2 32 YG2 C35 C24 C 0 1 N N N N N N -12.912 4.025 45.532 -6.657 0.640 0.118 C35 YG2 33 YG2 C36 C25 C 0 1 N N N N N N -12.455 2.695 44.842 -8.168 0.424 0.220 C36 YG2 34 YG2 F37 F1 F 0 1 N N N N N N -12.884 1.589 45.498 -8.458 -0.307 1.377 F37 YG2 35 YG2 F38 F2 F 0 1 N N N N N N -12.910 2.611 43.576 -8.814 1.664 0.278 F38 YG2 36 YG2 F39 F3 F 0 1 N N N N N N -11.119 2.591 44.730 -8.615 -0.282 -0.903 F39 YG2 37 YG2 H49 H1 H 0 1 N N N N N N -8.090 9.511 53.869 5.618 -2.657 1.122 H49 YG2 38 YG2 H50 H2 H 0 1 N N N N N N -9.439 14.358 53.220 7.841 1.461 -0.502 H50 YG2 39 YG2 H52 H3 H 0 1 N N N N N N -13.941 6.096 46.706 -4.474 1.520 -0.017 H52 YG2 40 YG2 H41 H4 H 0 1 N N N N N N -10.456 12.273 49.871 3.397 3.849 0.526 H41 YG2 41 YG2 H40 H5 H 0 1 N N N N N N -10.456 10.670 50.681 3.091 3.410 -1.188 H40 YG2 42 YG2 H42 H6 H 0 1 N N N N N N -14.045 12.263 51.933 3.524 -0.001 -0.968 H42 YG2 43 YG2 H43 H7 H 0 1 N N N N N N -13.576 12.945 50.339 3.014 0.094 0.746 H43 YG2 44 YG2 H10 H8 H 0 1 N N N N N N -12.953 10.043 51.226 1.839 1.456 -1.670 H10 YG2 45 YG2 H9 H9 H 0 1 N N N N N N -12.560 11.910 48.835 1.664 2.323 1.295 H9 YG2 46 YG2 H45 H10 H 0 1 N N N N N N -11.845 10.057 47.538 0.025 3.841 0.316 H45 YG2 47 YG2 H44 H11 H 0 1 N N N N N N -11.654 9.002 48.980 0.543 3.404 -1.347 H44 YG2 48 YG2 H46 H12 H 0 1 N N N N N N -14.926 9.261 50.238 0.100 -0.009 -1.181 H46 YG2 49 YG2 H47 H13 H 0 1 N N N N N N -15.202 10.786 49.329 0.393 0.089 0.583 H47 YG2 50 YG2 H48 H14 H 0 1 N N N N N N -10.351 10.135 53.157 4.395 -0.548 1.075 H48 YG2 51 YG2 H51 H15 H 0 1 N N N N N N -5.543 10.802 54.621 8.227 -3.750 0.483 H51 YG2 52 YG2 H53 H16 H 0 1 N N N N N N -11.515 10.632 43.759 -0.686 -2.932 -0.333 H53 YG2 53 YG2 H54 H17 H 0 1 N N N N N N -10.272 9.838 41.780 -1.851 -5.068 -0.276 H54 YG2 54 YG2 H55 H18 H 0 1 N N N N N N -10.152 7.414 41.211 -4.301 -5.165 -0.110 H55 YG2 55 YG2 H56 H19 H 0 1 N N N N N N -11.259 5.747 42.625 -5.625 -3.121 0.004 H56 YG2 56 YG2 H57 H20 H 0 1 N N N N N N -12.358 4.197 46.466 -6.309 1.190 0.992 H57 YG2 57 YG2 H58 H21 H 0 1 N N N N N N -13.991 4.011 45.743 -6.431 1.210 -0.783 H58 YG2 58 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YG2 N1 C2 SING N N 1 YG2 N1 C3 SING N N 2 YG2 N1 C11 SING N N 3 YG2 C2 C5 SING N N 4 YG2 C3 C4 SING N N 5 YG2 C4 C5 SING N N 6 YG2 C4 C8 SING N N 7 YG2 C5 C6 SING N N 8 YG2 C6 N7 SING N N 9 YG2 N7 C8 SING N N 10 YG2 N7 C22 SING N N 11 YG2 C11 C12 SING N N 12 YG2 C11 O13 DOUB N N 13 YG2 C12 C14 DOUB Y N 14 YG2 C12 C16 SING Y N 15 YG2 C14 C15 SING Y N 16 YG2 C15 C18 DOUB Y N 17 YG2 C16 C17 DOUB Y N 18 YG2 C17 C18 SING Y N 19 YG2 C17 N21 SING Y N 20 YG2 C18 N19 SING Y N 21 YG2 N19 N20 SING Y N 22 YG2 N20 N21 DOUB Y N 23 YG2 C22 C23 SING N N 24 YG2 C22 O24 DOUB N N 25 YG2 C23 N25 DOUB Y N 26 YG2 C23 C27 SING Y N 27 YG2 N25 C29 SING Y N 28 YG2 C26 C28 SING Y N 29 YG2 C26 C27 DOUB Y N 30 YG2 C26 O34 SING N N 31 YG2 C28 C29 DOUB Y N 32 YG2 C28 C33 SING Y N 33 YG2 C29 C30 SING Y N 34 YG2 C30 C31 DOUB Y N 35 YG2 C31 C32 SING Y N 36 YG2 C32 C33 DOUB Y N 37 YG2 O34 C35 SING N N 38 YG2 C35 C36 SING N N 39 YG2 C36 F37 SING N N 40 YG2 C36 F38 SING N N 41 YG2 C36 F39 SING N N 42 YG2 C15 H49 SING N N 43 YG2 C16 H50 SING N N 44 YG2 C27 H52 SING N N 45 YG2 C2 H41 SING N N 46 YG2 C2 H40 SING N N 47 YG2 C3 H42 SING N N 48 YG2 C3 H43 SING N N 49 YG2 C4 H10 SING N N 50 YG2 C5 H9 SING N N 51 YG2 C6 H45 SING N N 52 YG2 C6 H44 SING N N 53 YG2 C8 H46 SING N N 54 YG2 C8 H47 SING N N 55 YG2 C14 H48 SING N N 56 YG2 N19 H51 SING N N 57 YG2 C30 H53 SING N N 58 YG2 C31 H54 SING N N 59 YG2 C32 H55 SING N N 60 YG2 C33 H56 SING N N 61 YG2 C35 H57 SING N N 62 YG2 C35 H58 SING N N 63 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YG2 SMILES ACDLabs 12.01 "FC(F)(F)COc1cc(nc2ccccc12)C(=O)N1CC2CN(CC2C1)C(=O)c1cc2nn[NH]c2cc1" YG2 InChI InChI 1.06 "InChI=1S/C25H21F3N6O3/c26-25(27,28)13-37-22-8-21(29-18-4-2-1-3-17(18)22)24(36)34-11-15-9-33(10-16(15)12-34)23(35)14-5-6-19-20(7-14)31-32-30-19/h1-8,15-16H,9-13H2,(H,30,31,32)" YG2 InChIKey InChI 1.06 PNENDHTYPWTEAK-UHFFFAOYSA-N YG2 SMILES_CANONICAL CACTVS 3.385 "FC(F)(F)COc1cc(nc2ccccc12)C(=O)N3C[C@@H]4CN(C[C@H]4C3)C(=O)c5ccc6[nH]nnc6c5" YG2 SMILES CACTVS 3.385 "FC(F)(F)COc1cc(nc2ccccc12)C(=O)N3C[CH]4CN(C[CH]4C3)C(=O)c5ccc6[nH]nnc6c5" YG2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)c(cc(n2)C(=O)N3C[C@@H]4CN(C[C@H]4C3)C(=O)c5ccc6c(c5)nn[nH]6)OCC(F)(F)F" YG2 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)c(cc(n2)C(=O)N3CC4CN(CC4C3)C(=O)c5ccc6c(c5)nn[nH]6)OCC(F)(F)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YG2 "SYSTEMATIC NAME" ACDLabs 12.01 "[(3aR,6aS)-5-(1H-benzotriazole-5-carbonyl)hexahydropyrrolo[3,4-c]pyrrol-2(1H)-yl][4-(2,2,2-trifluoroethoxy)quinolin-2-yl]methanone" YG2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(3~{a}~{S},6~{a}~{S})-5-[4-[2,2,2-tris(fluoranyl)ethoxy]quinolin-2-yl]carbonyl-1,3,3~{a},4,6,6~{a}-hexahydropyrrolo[3,4-c]pyrrol-2-yl]-(1~{H}-benzotriazol-5-yl)methanone" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YG2 "Create component" 2023-06-13 RCSB YG2 "Initial release" 2024-12-18 RCSB #