data_YG9 # _chem_comp.id YG9 _chem_comp.name "(5R)-5-[2-(4-methoxyphenyl)ethyl]-5-methylimidazolidine-2,4-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H16 N2 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-01-28 _chem_comp.pdbx_modified_date 2023-02-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 248.278 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YG9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7FSG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YG9 C10 C1 C 0 1 N N N -7.292 -10.336 -8.519 -2.435 -1.461 1.561 C10 YG9 1 YG9 C15 C2 C 0 1 N N N -5.014 -11.510 -8.661 -3.203 -0.974 -0.772 C15 YG9 2 YG9 C17 C3 C 0 1 Y N N -4.014 -8.167 -13.086 1.904 1.374 0.035 C17 YG9 3 YG9 C01 C4 C 0 1 N N N -3.616 -4.109 -14.420 6.180 -0.688 -0.468 C01 YG9 4 YG9 C03 C5 C 0 1 Y N N -3.213 -5.888 -12.863 4.069 0.380 -0.238 C03 YG9 5 YG9 C04 C6 C 0 1 Y N N -3.152 -6.058 -11.494 3.600 -0.794 0.333 C04 YG9 6 YG9 C05 C7 C 0 1 Y N N -3.528 -7.277 -10.927 2.288 -0.878 0.758 C05 YG9 7 YG9 C06 C8 C 0 1 Y N N -3.948 -8.330 -11.726 1.440 0.203 0.604 C06 YG9 8 YG9 C07 C9 C 0 1 N N N -4.404 -9.644 -11.107 0.006 0.104 1.057 C07 YG9 9 YG9 C08 C10 C 0 1 N N N -5.484 -9.409 -10.031 -0.859 -0.413 -0.094 C08 YG9 10 YG9 C09 C11 C 0 1 N N R -6.053 -10.684 -9.413 -2.314 -0.513 0.366 C09 YG9 11 YG9 C12 C12 C 0 1 N N N -5.929 -12.824 -10.408 -3.877 1.044 -0.132 C12 YG9 12 YG9 C18 C13 C 0 1 Y N N -3.626 -6.963 -13.645 3.217 1.465 -0.387 C18 YG9 13 YG9 N11 N1 N 0 1 N N N -6.562 -11.504 -10.472 -2.847 0.818 0.704 N11 YG9 14 YG9 N14 N2 N 0 1 N N N -4.986 -12.824 -9.268 -4.083 0.026 -0.975 N14 YG9 15 YG9 O02 O1 O 0 1 N N N -2.819 -4.673 -13.424 5.360 0.468 -0.652 O02 YG9 16 YG9 O13 O2 O 0 1 N N N -6.178 -13.724 -11.142 -4.544 2.059 -0.122 O13 YG9 17 YG9 O16 O3 O 0 1 N N N -4.364 -11.200 -7.717 -3.133 -2.022 -1.378 O16 YG9 18 YG9 H102 H1 H 0 0 N N N -7.697 -11.259 -8.077 -1.829 -1.086 2.385 H102 YG9 19 YG9 H101 H2 H 0 0 N N N -6.984 -9.650 -7.716 -3.478 -1.520 1.874 H101 YG9 20 YG9 H103 H3 H 0 0 N N N -8.065 -9.855 -9.136 -2.086 -2.453 1.275 H103 YG9 21 YG9 H171 H4 H 0 0 N N N -4.366 -8.972 -13.715 1.240 2.217 -0.084 H171 YG9 22 YG9 H012 H5 H 0 0 N N N -3.170 -3.161 -14.754 6.228 -0.935 0.593 H012 YG9 23 YG9 H011 H6 H 0 0 N N N -3.684 -4.802 -15.271 5.753 -1.528 -1.017 H011 YG9 24 YG9 H013 H7 H 0 0 N N N -4.623 -3.920 -14.020 7.184 -0.484 -0.840 H013 YG9 25 YG9 H041 H8 H 0 0 N N N -2.814 -5.249 -10.863 4.261 -1.640 0.450 H041 YG9 26 YG9 H051 H9 H 0 0 N N N -3.491 -7.401 -9.855 1.923 -1.791 1.204 H051 YG9 27 YG9 H072 H10 H 0 0 N N N -3.539 -10.142 -10.644 -0.062 -0.584 1.900 H072 YG9 28 YG9 H071 H11 H 0 0 N N N -4.819 -10.288 -11.897 -0.347 1.089 1.363 H071 YG9 29 YG9 H082 H12 H 0 0 N N N -5.040 -8.806 -9.225 -0.791 0.275 -0.937 H082 YG9 30 YG9 H081 H13 H 0 0 N N N -6.313 -8.852 -10.492 -0.506 -1.398 -0.400 H081 YG9 31 YG9 H181 H14 H 0 0 N N N -3.644 -6.854 -14.719 3.579 2.380 -0.832 H181 YG9 32 YG9 H111 H15 H 0 0 N N N -7.242 -11.220 -11.148 -2.520 1.415 1.395 H111 YG9 33 YG9 H141 H16 H 0 0 N N N -4.427 -13.597 -8.969 -4.781 0.010 -1.649 H141 YG9 34 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YG9 O02 C01 SING N N 1 YG9 C03 O02 SING N N 2 YG9 C04 C03 DOUB Y N 3 YG9 C05 C04 SING Y N 4 YG9 C06 C05 DOUB Y N 5 YG9 C08 C07 SING N N 6 YG9 C09 C08 SING N N 7 YG9 C10 C09 SING N N 8 YG9 N11 C09 SING N N 9 YG9 C12 N11 SING N N 10 YG9 O13 C12 DOUB N N 11 YG9 N14 C12 SING N N 12 YG9 C15 N14 SING N N 13 YG9 O16 C15 DOUB N N 14 YG9 C07 C06 SING N N 15 YG9 C17 C06 SING Y N 16 YG9 C18 C17 DOUB Y N 17 YG9 C03 C18 SING Y N 18 YG9 C09 C15 SING N N 19 YG9 C10 H102 SING N N 20 YG9 C10 H101 SING N N 21 YG9 C10 H103 SING N N 22 YG9 C17 H171 SING N N 23 YG9 C01 H012 SING N N 24 YG9 C01 H011 SING N N 25 YG9 C01 H013 SING N N 26 YG9 C04 H041 SING N N 27 YG9 C05 H051 SING N N 28 YG9 C07 H072 SING N N 29 YG9 C07 H071 SING N N 30 YG9 C08 H082 SING N N 31 YG9 C08 H081 SING N N 32 YG9 C18 H181 SING N N 33 YG9 N11 H111 SING N N 34 YG9 N14 H141 SING N N 35 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YG9 SMILES ACDLabs 12.01 "COc1ccc(cc1)CCC1(C)NC(=O)NC1=O" YG9 InChI InChI 1.06 "InChI=1S/C13H16N2O3/c1-13(11(16)14-12(17)15-13)8-7-9-3-5-10(18-2)6-4-9/h3-6H,7-8H2,1-2H3,(H2,14,15,16,17)/t13-/m1/s1" YG9 InChIKey InChI 1.06 HYRDVXQOZUFAFW-CYBMUJFWSA-N YG9 SMILES_CANONICAL CACTVS 3.385 "COc1ccc(CC[C@@]2(C)NC(=O)NC2=O)cc1" YG9 SMILES CACTVS 3.385 "COc1ccc(CC[C]2(C)NC(=O)NC2=O)cc1" YG9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@]1(C(=O)NC(=O)N1)CCc2ccc(cc2)OC" YG9 SMILES "OpenEye OEToolkits" 2.0.7 "CC1(C(=O)NC(=O)N1)CCc2ccc(cc2)OC" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YG9 "SYSTEMATIC NAME" ACDLabs 12.01 "(5R)-5-[2-(4-methoxyphenyl)ethyl]-5-methylimidazolidine-2,4-dione" YG9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(5~{R})-5-[2-(4-methoxyphenyl)ethyl]-5-methyl-imidazolidine-2,4-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YG9 "Create component" 2023-01-28 RCSB YG9 "Initial release" 2023-02-15 RCSB #