data_YGB # _chem_comp.id YGB _chem_comp.name "(3,5-dichlorophenyl)methyl (3aR,5r,6aS)-5-{[(1H-1,2,3-triazol-5-yl)methyl]carbamoyl}hexahydrocyclopenta[c]pyrrole-2(1H)-carboxylate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H21 Cl2 N5 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-13 _chem_comp.pdbx_modified_date 2024-12-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 438.308 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YGB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7G57 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YGB C01 C1 C 0 1 N N S N N N -14.126 10.717 49.250 -1.924 -2.320 -0.679 C01 YGB 1 YGB C02 C2 C 0 1 N N N N N N -15.163 9.509 49.303 -1.051 -2.304 0.587 C02 YGB 2 YGB N03 N1 N 0 1 N N N N N N -14.650 8.472 48.230 0.242 -1.705 0.229 N03 YGB 3 YGB C04 C3 C 0 1 N N N N N N -13.286 9.073 47.621 0.238 -1.394 -1.210 C04 YGB 4 YGB C05 C4 C 0 1 N N R N N N -12.812 10.110 48.707 -1.254 -1.247 -1.592 C05 YGB 5 YGB C06 C5 C 0 1 N N N N N N -11.780 10.024 50.031 -1.767 0.099 -1.050 C06 YGB 6 YGB C07 C6 C 0 1 N N N N N N -12.470 10.898 51.149 -3.046 -0.191 -0.249 C07 YGB 7 YGB C11 C7 C 0 1 N N N N N N -11.531 11.693 52.036 -4.206 0.571 -0.837 C11 YGB 8 YGB O12 O1 O 0 1 N N N N N N -11.445 12.908 51.878 -4.037 1.282 -1.805 O12 YGB 9 YGB C15 C8 C 0 1 Y N N N N N -9.645 11.110 55.200 -7.807 0.910 -0.065 C15 YGB 10 YGB C19 C9 C 0 1 Y N N N N N -10.646 10.765 56.130 -8.750 -0.019 -0.346 C19 YGB 11 YGB C20 C10 C 0 1 N N N N N N -14.707 7.078 47.868 1.264 -1.478 1.078 C20 YGB 12 YGB C23 C11 C 0 1 N N N N N N -13.671 5.203 46.684 3.461 -0.705 1.597 C23 YGB 13 YGB C24 C12 C 0 1 Y N N N N N -12.587 5.106 45.683 4.649 -0.077 0.914 C24 YGB 14 YGB C25 C13 C 0 1 Y N N N N N -11.903 3.977 45.547 4.755 1.299 0.838 C25 YGB 15 YGB C26 C14 C 0 1 Y N N N N N -10.878 3.907 44.592 5.845 1.876 0.211 C26 YGB 16 YGB C27 C15 C 0 1 Y N N N N N -10.564 4.998 43.785 6.830 1.075 -0.339 C27 YGB 17 YGB C28 C16 C 0 1 Y N N N N N -11.256 6.139 43.930 6.724 -0.302 -0.262 C28 YGB 18 YGB C08 C17 C 0 1 N N N N N N -13.654 11.778 50.325 -3.302 -1.706 -0.357 C08 YGB 19 YGB N13 N2 N 0 1 N N N N N N -10.755 11.029 53.063 -5.432 0.463 -0.287 N13 YGB 20 YGB C14 C18 C 0 1 N N N N N N -9.867 11.835 53.894 -6.559 1.203 -0.858 C14 YGB 21 YGB N16 N3 N 0 1 Y N N N N N -8.473 10.687 55.660 -8.212 1.527 1.069 N16 YGB 22 YGB N17 N4 N 0 1 Y N N N N N -8.697 10.075 56.885 -9.326 0.999 1.440 N17 YGB 23 YGB N18 N5 N 0 1 Y N N N N N -10.047 10.133 57.145 -9.674 0.073 0.617 N18 YGB 24 YGB O21 O2 O 0 1 N N N N N N -13.588 6.435 47.326 2.403 -0.920 0.627 O21 YGB 25 YGB O22 O3 O 0 1 N N N N N N -15.545 6.421 48.484 1.157 -1.776 2.251 O22 YGB 26 YGB C29 C19 C 0 1 Y N N N N N -12.264 6.235 44.856 5.635 -0.878 0.369 C29 YGB 27 YGB CL30 CL1 CL 0 0 N N N N N N -9.972 2.452 44.394 5.977 3.604 0.114 CL30 YGB 28 YGB CL31 CL2 CL 0 0 N N N N N N -10.871 7.489 42.933 7.959 -1.308 -0.953 CL31 YGB 29 YGB H09 H1 H 0 1 N N N N N N -14.495 11.337 48.419 -1.983 -3.304 -1.144 H09 YGB 30 YGB H32 H2 H 0 1 N N N N N N -15.173 9.054 50.304 -1.533 -1.707 1.361 H32 YGB 31 YGB H33 H3 H 0 1 N N N N N N -16.175 9.858 49.048 -0.900 -3.323 0.945 H33 YGB 32 YGB H34 H4 H 0 1 N N N N N N -12.536 8.280 47.483 0.769 -0.461 -1.397 H34 YGB 33 YGB H35 H5 H 0 1 N N N N N N -13.473 9.572 46.659 0.693 -2.208 -1.774 H35 YGB 34 YGB H10 H6 H 0 1 N N N N N N -12.373 10.924 48.112 -1.445 -1.397 -2.655 H10 YGB 35 YGB H36 H7 H 0 1 N N N N N N -11.670 8.983 50.368 -1.016 0.547 -0.399 H36 YGB 36 YGB H37 H8 H 0 1 N N N N N N -10.791 10.433 49.777 -1.992 0.771 -1.878 H37 YGB 37 YGB H38 H9 H 0 1 N N N N N N -13.021 10.201 51.798 -2.905 0.090 0.794 H38 YGB 38 YGB H45 H10 H 0 1 N N N N N N -11.702 10.973 56.040 -8.755 -0.701 -1.183 H45 YGB 39 YGB H46 H11 H 0 1 N N N N N N -13.564 4.395 47.422 3.755 -1.660 2.032 H46 YGB 40 YGB H47 H12 H 0 1 N N N N N N -14.646 5.114 46.182 3.103 -0.041 2.384 H47 YGB 41 YGB H48 H13 H 0 1 N N N N N N -12.133 3.122 46.165 3.986 1.924 1.267 H48 YGB 42 YGB H49 H14 H 0 1 N N N N N N -9.774 4.927 43.052 7.681 1.525 -0.829 H49 YGB 43 YGB H40 H15 H 0 1 N N N N N N -13.232 12.675 49.849 -4.008 -1.915 -1.161 H40 YGB 44 YGB H39 H16 H 0 1 N N N N N N -14.478 12.070 50.993 -3.679 -2.095 0.589 H39 YGB 45 YGB H41 H17 H 0 1 N N N N N N -10.826 10.041 53.199 -5.567 -0.106 0.487 H41 YGB 46 YGB H43 H18 H 0 1 N N N N N N -8.905 11.977 53.380 -6.708 0.897 -1.894 H43 YGB 47 YGB H42 H19 H 0 1 N N N N N N -10.328 12.815 54.087 -6.348 2.272 -0.822 H42 YGB 48 YGB H44 H20 H 0 1 N N N N N N -7.588 10.791 55.205 -7.744 2.244 1.525 H44 YGB 49 YGB H50 H21 H 0 1 N N N N N N -12.814 7.158 44.963 5.555 -1.953 0.433 H50 YGB 50 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YGB C01 C02 SING N N 1 YGB C02 N03 SING N N 2 YGB N03 C04 SING N N 3 YGB C01 C05 SING N N 4 YGB C04 C05 SING N N 5 YGB C05 C06 SING N N 6 YGB C06 C07 SING N N 7 YGB C01 C08 SING N N 8 YGB C07 C08 SING N N 9 YGB C07 C11 SING N N 10 YGB C11 O12 DOUB N N 11 YGB C11 N13 SING N N 12 YGB N13 C14 SING N N 13 YGB C14 C15 SING N N 14 YGB C15 N16 SING Y N 15 YGB N16 N17 SING Y N 16 YGB N17 N18 DOUB Y N 17 YGB C15 C19 DOUB Y N 18 YGB N18 C19 SING Y N 19 YGB N03 C20 SING N N 20 YGB C20 O21 SING N N 21 YGB C20 O22 DOUB N N 22 YGB O21 C23 SING N N 23 YGB C23 C24 SING N N 24 YGB C24 C25 DOUB Y N 25 YGB C25 C26 SING Y N 26 YGB C26 C27 DOUB Y N 27 YGB C27 C28 SING Y N 28 YGB C24 C29 SING Y N 29 YGB C28 C29 DOUB Y N 30 YGB C26 CL30 SING N N 31 YGB C28 CL31 SING N N 32 YGB C01 H09 SING N N 33 YGB C02 H32 SING N N 34 YGB C02 H33 SING N N 35 YGB C04 H34 SING N N 36 YGB C04 H35 SING N N 37 YGB C05 H10 SING N N 38 YGB C06 H36 SING N N 39 YGB C06 H37 SING N N 40 YGB C07 H38 SING N N 41 YGB C19 H45 SING N N 42 YGB C23 H46 SING N N 43 YGB C23 H47 SING N N 44 YGB C25 H48 SING N N 45 YGB C27 H49 SING N N 46 YGB C08 H40 SING N N 47 YGB C08 H39 SING N N 48 YGB N13 H41 SING N N 49 YGB C14 H43 SING N N 50 YGB C14 H42 SING N N 51 YGB N16 H44 SING N N 52 YGB C29 H50 SING N N 53 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YGB SMILES ACDLabs 12.01 "O=C(NCc1cnn[NH]1)C1CC2CN(CC2C1)C(=O)OCc1cc(Cl)cc(Cl)c1" YGB InChI InChI 1.06 "InChI=1S/C19H21Cl2N5O3/c20-15-1-11(2-16(21)5-15)10-29-19(28)26-8-13-3-12(4-14(13)9-26)18(27)22-6-17-7-23-25-24-17/h1-2,5,7,12-14H,3-4,6,8-10H2,(H,22,27)(H,23,24,25)/t12?,13-,14?/m0/s1" YGB InChIKey InChI 1.06 DQQUPPOGGCLVBE-MOKVOYLWSA-N YGB SMILES_CANONICAL CACTVS 3.385 "Clc1cc(Cl)cc(COC(=O)N2C[C@@H]3CC(C[C@@H]3C2)C(=O)NCc4[nH]nnc4)c1" YGB SMILES CACTVS 3.385 "Clc1cc(Cl)cc(COC(=O)N2C[CH]3CC(C[CH]3C2)C(=O)NCc4[nH]nnc4)c1" YGB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c(cc(cc1Cl)Cl)COC(=O)N2C[C@H]3CC(C[C@H]3C2)C(=O)NCc4cnn[nH]4" YGB SMILES "OpenEye OEToolkits" 2.0.7 "c1c(cc(cc1Cl)Cl)COC(=O)N2CC3CC(CC3C2)C(=O)NCc4cnn[nH]4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YGB "SYSTEMATIC NAME" ACDLabs 12.01 "(3,5-dichlorophenyl)methyl (3aR,5r,6aS)-5-{[(1H-1,2,3-triazol-5-yl)methyl]carbamoyl}hexahydrocyclopenta[c]pyrrole-2(1H)-carboxylate" YGB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[3,5-bis(chloranyl)phenyl]methyl (3~{a}~{S},6~{a}~{R})-5-(1~{H}-1,2,3-triazol-5-ylmethylcarbamoyl)-3,3~{a},4,5,6,6~{a}-hexahydro-1~{H}-cyclopenta[c]pyrrole-2-carboxylate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YGB "Create component" 2023-06-13 RCSB YGB "Initial release" 2024-12-18 RCSB #