data_YGF # _chem_comp.id YGF _chem_comp.name "(3aS,4R,7R,10aS)-2,6-diamino-4-(hydroxymethyl)-3a,4,8,9-tetrahydro-1H,10H-pyrrolo[1,2-c]purine-10,10-diol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H16 N6 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-12-04 _chem_comp.pdbx_modified_date 2025-05-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 256.262 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YGF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8V68 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YGF C01 C1 C 0 1 N N N N N N -50.050 17.738 9.979 0.626 -2.318 -1.308 C01 YGF 1 YGF C02 C2 C 0 1 N N N N N N -48.679 17.334 9.334 -0.670 -1.533 -1.639 C02 YGF 2 YGF C04 C3 C 0 1 N N N N N N -48.229 15.066 8.254 -1.225 0.946 -1.239 C04 YGF 3 YGF C06 C4 C 0 1 N N R N N N -49.874 14.031 6.767 -1.298 0.806 1.148 C06 YGF 4 YGF C07 C5 C 0 1 N N S N N N -50.810 15.308 6.875 0.169 0.393 1.231 C07 YGF 5 YGF C08 C6 C 0 1 N N S N N N -50.297 16.462 7.824 0.617 -0.258 -0.080 C08 YGF 6 YGF C09 C7 C 0 1 N N N N N N -51.138 16.986 9.109 1.024 -1.722 0.074 C09 YGF 7 YGF C13 C8 C 0 1 N N N N N N -50.407 17.173 5.507 1.867 1.615 0.361 C13 YGF 8 YGF C16 C9 C 0 1 N N N N N N -50.667 12.794 7.330 -2.173 -0.445 1.243 C16 YGF 9 YGF N03 N1 N 0 1 N N N N N N -49.021 16.233 8.463 -0.491 -0.208 -1.047 N03 YGF 10 YGF N05 N2 N 0 1 N N N N N N -48.579 14.079 7.483 -1.605 1.508 -0.103 N05 YGF 11 YGF N12 N3 N 0 1 N N N N N N -50.070 17.550 6.859 1.735 0.577 -0.526 N12 YGF 12 YGF N14 N4 N 0 1 N N N N N N -50.883 15.871 5.514 1.029 1.579 1.349 N14 YGF 13 YGF N15 N5 N 0 1 N N N N N N -50.308 17.996 4.377 2.806 2.608 0.213 N15 YGF 14 YGF N18 N6 N 0 1 N N N N N N -46.985 15.065 8.954 -1.528 1.457 -2.479 N18 YGF 15 YGF O10 O1 O 0 1 N N N N N N -52.178 17.803 8.649 2.431 -1.839 0.295 O10 YGF 16 YGF O11 O2 O 0 1 N N N N N N -51.655 15.870 9.773 0.290 -2.347 1.129 O11 YGF 17 YGF O17 O3 O 0 1 N N N N N N -51.037 12.997 8.679 -3.549 -0.062 1.283 O17 YGF 18 YGF H1 H1 H 0 1 N N N N N N -50.197 18.827 9.928 0.425 -3.386 -1.227 H1 YGF 19 YGF H2 H2 H 0 1 N N N N N N -50.097 17.410 11.028 1.399 -2.125 -2.052 H2 YGF 20 YGF H3 H3 H 0 1 N N N N N N -47.962 17.016 10.105 -0.795 -1.450 -2.719 H3 YGF 21 YGF H4 H4 H 0 1 N N N N N N -48.254 18.171 8.760 -1.534 -2.030 -1.198 H4 YGF 22 YGF H5 H5 H 0 1 N N N N N N -49.683 13.849 5.699 -1.529 1.464 1.986 H5 YGF 23 YGF H6 H6 H 0 1 N N N N N N -51.808 14.989 7.210 0.324 -0.289 2.067 H6 YGF 24 YGF H7 H7 H 0 1 N N N N N N -51.575 12.645 6.727 -1.997 -1.078 0.373 H7 YGF 25 YGF H8 H8 H 0 1 N N N N N N -50.031 11.899 7.263 -1.923 -0.996 2.149 H8 YGF 26 YGF H9 H9 H 0 1 N N N N N N -49.720 18.452 7.112 2.284 0.423 -1.310 H9 YGF 27 YGF H10 H10 H 0 1 N N N N N N -50.594 17.653 3.482 2.862 3.323 0.866 H10 YGF 28 YGF H11 H11 H 0 1 N N N N N N -49.951 18.926 4.465 3.413 2.593 -0.543 H11 YGF 29 YGF H12 H12 H 0 1 N N N N N N -46.358 14.292 8.858 -1.222 1.002 -3.279 H12 YGF 30 YGF H13 H13 H 0 1 N N N N N N -46.741 15.837 9.541 -2.047 2.272 -2.554 H13 YGF 31 YGF H14 H14 H 0 1 N N N N N N -52.683 18.120 9.389 2.738 -2.750 0.399 H14 YGF 32 YGF H15 H15 H 0 1 N N N N N N -52.152 16.154 10.531 0.514 -3.278 1.265 H15 YGF 33 YGF H16 H16 H 0 1 N N N N N N -51.513 12.238 8.995 -4.163 -0.807 1.343 H16 YGF 34 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YGF N15 C13 SING N N 1 YGF C13 N14 DOUB N N 2 YGF C13 N12 SING N N 3 YGF N14 C07 SING N N 4 YGF C06 C07 SING N N 5 YGF C06 C16 SING N N 6 YGF C06 N05 SING N N 7 YGF N12 C08 SING N N 8 YGF C07 C08 SING N N 9 YGF C16 O17 SING N N 10 YGF N05 C04 DOUB N N 11 YGF C08 N03 SING N N 12 YGF C08 C09 SING N N 13 YGF C04 N03 SING N N 14 YGF C04 N18 SING N N 15 YGF N03 C02 SING N N 16 YGF O10 C09 SING N N 17 YGF C09 O11 SING N N 18 YGF C09 C01 SING N N 19 YGF C02 C01 SING N N 20 YGF C01 H1 SING N N 21 YGF C01 H2 SING N N 22 YGF C02 H3 SING N N 23 YGF C02 H4 SING N N 24 YGF C06 H5 SING N N 25 YGF C07 H6 SING N N 26 YGF C16 H7 SING N N 27 YGF C16 H8 SING N N 28 YGF N12 H9 SING N N 29 YGF N15 H10 SING N N 30 YGF N15 H11 SING N N 31 YGF N18 H12 SING N N 32 YGF N18 H13 SING N N 33 YGF O10 H14 SING N N 34 YGF O11 H15 SING N N 35 YGF O17 H16 SING N N 36 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YGF SMILES ACDLabs 12.01 "NC1=NC(CO)C2N=C(N)NC22N1CCC2(O)O" YGF InChI InChI 1.06 "InChI=1S/C9H16N6O3/c10-6-13-5-4(3-16)12-7(11)15-2-1-8(17,18)9(5,15)14-6/h4-5,16-18H,1-3H2,(H2,11,12)(H3,10,13,14)/t4-,5-,9-/m0/s1" YGF InChIKey InChI 1.06 VRRIYZJUSNMZMP-PJPYAQQDSA-N YGF SMILES_CANONICAL CACTVS 3.385 "NC1=N[C@H]2[C@H](CO)N=C(N)N3CCC(O)(O)[C@]23N1" YGF SMILES CACTVS 3.385 "NC1=N[CH]2[CH](CO)N=C(N)N3CCC(O)(O)[C]23N1" YGF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1CN2C(=N[C@H]([C@H]3[C@]2(C1(O)O)NC(=N3)N)CO)N" YGF SMILES "OpenEye OEToolkits" 2.0.7 "C1CN2C(=NC(C3C2(C1(O)O)NC(=N3)N)CO)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YGF "SYSTEMATIC NAME" ACDLabs 12.01 "(3aS,4R,7R,10aS)-2,6-diamino-4-(hydroxymethyl)-3a,4,8,9-tetrahydro-1H,10H-pyrrolo[1,2-c]purine-10,10-diol" YGF "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{a}~{S},4~{R},10~{a}~{S})-2,6-bis(azanyl)-4-(hydroxymethyl)-3~{a},4,8,9-tetrahydro-1~{H}-pyrrolo[1,2-c]purine-10,10-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YGF "Create component" 2023-12-04 RCSB YGF "Initial release" 2025-05-07 RCSB #