data_YGH
#
_chem_comp.id YGH
_chem_comp.name "4-fluoro-5-methoxy-3-[2-(pyrrolidin-1-yl)ethyl]-1H-indole"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C15 H19 F N2 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2023-01-28
_chem_comp.pdbx_modified_date 2024-05-10
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 262.323
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code YGH
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8FYE
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YGH C1 C1 C 0 1 Y N N N N N 122.604 128.410 115.168 -2.131 -1.746 0.254 C1 YGH 1
YGH C2 C2 C 0 1 Y N N N N N 122.992 129.406 114.224 -1.255 -0.733 -0.175 C2 YGH 2
YGH C3 C3 C 0 1 Y N N N N N 122.186 129.538 113.055 -1.717 0.579 -0.310 C3 YGH 3
YGH C10 C4 C 0 1 Y N N N N N 124.182 130.039 114.763 0.041 -1.382 -0.391 C10 YGH 4
YGH C11 C5 C 0 1 N N N N N N 125.020 131.132 114.225 1.310 -0.716 -0.856 C11 YGH 5
YGH C12 C6 C 0 1 N N N N N N 124.740 132.483 114.859 2.040 -0.114 0.346 C12 YGH 6
YGH C14 C7 C 0 1 N N N N N N 125.148 134.819 114.613 4.297 -0.465 -0.493 C14 YGH 7
YGH C15 C8 C 0 1 N N N N N N 124.991 135.718 113.399 5.672 0.116 -0.114 C15 YGH 8
YGH C16 C9 C 0 1 N N N N N N 125.030 133.423 112.677 3.892 1.335 0.986 C16 YGH 9
YGH C18 C10 C 0 1 N N N N N N 125.167 134.839 112.170 5.366 1.487 0.533 C18 YGH 10
YGH C4 C11 C 0 1 Y N N N N N 121.048 128.755 112.791 -3.036 0.872 -0.018 C4 YGH 11
YGH C5 C12 C 0 1 Y N N N N N 120.716 127.789 113.768 -3.899 -0.133 0.408 C5 YGH 12
YGH C6 C13 C 0 1 Y N N N N N 121.460 127.603 114.928 -3.454 -1.429 0.547 C6 YGH 13
YGH C8 C14 C 0 1 N N N N N N 119.701 127.777 111.037 -4.865 2.381 0.172 C8 YGH 14
YGH C9 C15 C 0 1 Y N N N N N 124.477 129.447 115.970 -0.117 -2.682 -0.095 C9 YGH 15
YGH F1 F1 F 0 1 N N N N N N 122.562 130.488 112.159 -0.879 1.556 -0.722 F1 YGH 16
YGH N1 N1 N 0 1 Y N N N N N 123.529 128.447 116.241 -1.408 -2.919 0.293 N1 YGH 17
YGH N13 N2 N 0 1 N N N N N N 125.529 133.494 114.073 3.278 0.535 -0.108 N13 YGH 18
YGH O7 O1 O 0 1 N N N N N N 120.292 128.925 111.629 -3.492 2.147 -0.146 O7 YGH 19
YGH H1 H1 H 0 1 N N N N N N 126.076 130.878 114.400 1.951 -1.454 -1.339 H1 YGH 20
YGH H2 H2 H 0 1 N N N N N N 124.836 131.211 113.143 1.066 0.074 -1.567 H2 YGH 21
YGH H3 H3 H 0 1 N N N N N N 125.062 132.484 115.911 1.399 0.623 0.828 H3 YGH 22
YGH H4 H4 H 0 1 N N N N N N 123.666 132.713 114.804 2.284 -0.904 1.056 H4 YGH 23
YGH H5 H5 H 0 1 N N N N N N 125.935 135.204 115.278 4.254 -0.644 -1.568 H5 YGH 24
YGH H6 H6 H 0 1 N N N N N N 124.200 134.751 115.167 4.126 -1.396 0.046 H6 YGH 25
YGH H7 H7 H 0 1 N N N N N N 125.757 136.507 113.412 6.174 -0.536 0.601 H7 YGH 26
YGH H8 H8 H 0 1 N N N N N N 123.991 136.177 113.395 6.287 0.246 -1.004 H8 YGH 27
YGH H9 H9 H 0 1 N N N N N N 123.979 133.099 112.653 3.838 0.797 1.933 H9 YGH 28
YGH H10 H10 H 0 1 N N N N N N 125.641 132.732 112.078 3.408 2.308 1.069 H10 YGH 29
YGH H11 H11 H 0 1 N N N N N N 126.160 134.995 111.723 6.016 1.664 1.390 H11 YGH 30
YGH H12 H12 H 0 1 N N N N N N 124.390 135.059 111.423 5.464 2.288 -0.199 H12 YGH 31
YGH H13 H13 H 0 1 N N N N N N 119.847 127.169 113.607 -4.928 0.105 0.634 H13 YGH 32
YGH H14 H14 H 0 1 N N N N N N 121.169 126.848 115.643 -4.133 -2.201 0.878 H14 YGH 33
YGH H15 H15 H 0 1 N N N N N N 119.143 128.074 110.137 -5.098 3.436 0.027 H15 YGH 34
YGH H16 H16 H 0 1 N N N N N N 120.489 127.061 110.760 -5.497 1.777 -0.480 H16 YGH 35
YGH H17 H17 H 0 1 N N N N N N 119.014 127.307 111.756 -5.049 2.107 1.211 H17 YGH 36
YGH H18 H18 H 0 1 N N N N N N 125.307 129.710 116.609 0.660 -3.430 -0.154 H18 YGH 37
YGH H19 H19 H 0 1 N N N N N N 123.510 127.862 117.052 -1.761 -3.783 0.556 H19 YGH 38
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YGH C8 O7 SING N N 1
YGH O7 C4 SING N N 2
YGH F1 C3 SING N N 3
YGH C18 C16 SING N N 4
YGH C18 C15 SING N N 5
YGH C16 N13 SING N N 6
YGH C4 C3 DOUB Y N 7
YGH C4 C5 SING Y N 8
YGH C3 C2 SING Y N 9
YGH C15 C14 SING N N 10
YGH C5 C6 DOUB Y N 11
YGH N13 C14 SING N N 12
YGH N13 C12 SING N N 13
YGH C2 C10 SING Y N 14
YGH C2 C1 DOUB Y N 15
YGH C11 C10 SING N N 16
YGH C11 C12 SING N N 17
YGH C10 C9 DOUB Y N 18
YGH C6 C1 SING Y N 19
YGH C1 N1 SING Y N 20
YGH C9 N1 SING Y N 21
YGH C11 H1 SING N N 22
YGH C11 H2 SING N N 23
YGH C12 H3 SING N N 24
YGH C12 H4 SING N N 25
YGH C14 H5 SING N N 26
YGH C14 H6 SING N N 27
YGH C15 H7 SING N N 28
YGH C15 H8 SING N N 29
YGH C16 H9 SING N N 30
YGH C16 H10 SING N N 31
YGH C18 H11 SING N N 32
YGH C18 H12 SING N N 33
YGH C5 H13 SING N N 34
YGH C6 H14 SING N N 35
YGH C8 H15 SING N N 36
YGH C8 H16 SING N N 37
YGH C8 H17 SING N N 38
YGH C9 H18 SING N N 39
YGH N1 H19 SING N N 40
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YGH SMILES ACDLabs 12.01 "COc1ccc2[NH]cc(CCN3CCCC3)c2c1F"
YGH InChI InChI 1.06 "InChI=1S/C15H19FN2O/c1-19-13-5-4-12-14(15(13)16)11(10-17-12)6-9-18-7-2-3-8-18/h4-5,10,17H,2-3,6-9H2,1H3"
YGH InChIKey InChI 1.06 FJCRAYWNOXUYOO-UHFFFAOYSA-N
YGH SMILES_CANONICAL CACTVS 3.385 "COc1ccc2[nH]cc(CCN3CCCC3)c2c1F"
YGH SMILES CACTVS 3.385 "COc1ccc2[nH]cc(CCN3CCCC3)c2c1F"
YGH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1ccc2c(c1F)c(c[nH]2)CCN3CCCC3"
YGH SMILES "OpenEye OEToolkits" 2.0.7 "COc1ccc2c(c1F)c(c[nH]2)CCN3CCCC3"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
YGH "SYSTEMATIC NAME" ACDLabs 12.01 "4-fluoro-5-methoxy-3-[2-(pyrrolidin-1-yl)ethyl]-1H-indole"
YGH "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4-fluoranyl-5-methoxy-3-(2-pyrrolidin-1-ylethyl)-1~{H}-indole"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YGH "Create component" 2023-01-28 RCSB
YGH "Initial release" 2024-05-15 RCSB
#