data_YGQ # _chem_comp.id YGQ _chem_comp.name "Gonyautoxin II" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H17 N7 O8 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-12-04 _chem_comp.pdbx_modified_date 2025-11-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 395.349 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YGQ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8V69 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YGQ C01 C1 C 0 1 N N N N N N -48.887 17.109 9.665 -0.419 0.575 1.378 C01 YGQ 1 YGQ C02 C2 C 0 1 N N R N N N -50.287 17.008 10.432 -1.013 0.930 -0.014 C02 YGQ 2 YGQ C03 C3 C 0 1 N N N N N N -51.375 16.784 9.236 0.180 1.656 -0.697 C03 YGQ 3 YGQ C04 C4 C 0 1 N N S N N N -50.448 16.344 8.017 1.405 0.968 -0.099 C04 YGQ 4 YGQ C06 C5 C 0 1 N N N N N N -48.289 15.079 8.338 1.790 -0.707 1.702 C06 YGQ 5 YGQ C08 C6 C 0 1 N N R N N N -49.822 14.104 6.792 2.027 -1.422 -0.568 C08 YGQ 6 YGQ C09 C7 C 0 1 N N S N N N -50.877 15.217 6.981 2.101 0.014 -1.075 C09 YGQ 7 YGQ C11 C8 C 0 1 N N N N N N -50.474 17.045 5.732 3.614 1.538 -0.352 C11 YGQ 8 YGQ C14 C9 C 0 1 N N N N N N -50.600 12.861 7.350 0.601 -1.944 -0.760 C14 YGQ 9 YGQ C16 C10 C 0 1 N N N N N N -52.379 12.771 9.053 -0.647 -3.961 -0.504 C16 YGQ 10 YGQ N05 N1 N 0 1 N N N N N N -49.194 16.142 8.647 0.968 0.212 1.084 N05 YGQ 11 YGQ N07 N2 N 0 1 N N N N N N -48.515 14.136 7.482 2.385 -1.526 0.850 N07 YGQ 12 YGQ N10 N3 N 0 1 N N N N N N -50.892 15.797 5.627 3.493 0.484 -1.095 N10 YGQ 13 YGQ N12 N4 N 0 1 N N N N N N -50.225 17.481 7.071 2.451 1.930 0.260 N12 YGQ 14 YGQ N13 N5 N 0 1 N N N N N N -50.357 17.865 4.626 4.805 2.206 -0.191 N13 YGQ 15 YGQ N18 N6 N 0 1 N N N N N N -53.291 12.592 8.012 -0.767 -5.264 -0.177 N18 YGQ 16 YGQ N19 N7 N 0 1 N N N N N N -47.054 15.131 9.054 1.973 -0.765 3.064 N19 YGQ 17 YGQ O15 O1 O 0 1 N N N N N N -51.110 13.248 8.653 0.546 -3.347 -0.391 O15 YGQ 18 YGQ O17 O2 O 0 1 N N N N N N -52.667 12.576 10.229 -1.615 -3.342 -0.900 O17 YGQ 19 YGQ O20 O3 O 0 1 N N N N N N -52.317 15.796 9.465 0.139 1.469 -2.113 O20 YGQ 20 YGQ O21 O4 O 0 1 N N N N N N -52.106 17.912 8.868 0.173 3.048 -0.375 O21 YGQ 21 YGQ O22 O5 O 0 1 N N N N N N -50.547 18.121 11.194 -2.135 1.806 0.118 O22 YGQ 22 YGQ O24 O6 O 0 1 N N N N N N -52.818 17.776 11.777 -4.471 2.112 0.038 O24 YGQ 23 YGQ O25 O7 O 0 1 N N N N N N -51.642 19.541 12.987 -3.372 0.056 -0.862 O25 YGQ 24 YGQ O26 O8 O 0 1 N N N N N N -51.049 17.257 13.410 -3.648 0.414 1.451 O26 YGQ 25 YGQ S23 S1 S 0 1 N N N N N N -51.666 18.195 12.515 -3.480 1.095 0.101 S23 YGQ 26 YGQ H1 H1 H 0 1 N N N N N N -48.037 16.807 10.294 -0.457 1.438 2.042 H1 YGQ 27 YGQ H2 H2 H 0 1 N N N N N N -48.701 18.112 9.254 -0.952 -0.269 1.817 H2 YGQ 28 YGQ H3 H3 H 0 1 N N N N N N -50.274 16.097 11.049 -1.288 0.030 -0.563 H3 YGQ 29 YGQ H4 H4 H 0 1 N N N N N N -49.662 13.954 5.714 2.711 -2.039 -1.150 H4 YGQ 30 YGQ H5 H5 H 0 1 N N N N N N -51.853 14.792 7.260 1.650 0.089 -2.065 H5 YGQ 31 YGQ H6 H6 H 0 1 N N N N N N -51.431 12.599 6.678 -0.082 -1.375 -0.130 H6 YGQ 32 YGQ H7 H7 H 0 1 N N N N N N -49.922 12.000 7.447 0.311 -1.831 -1.805 H7 YGQ 33 YGQ H8 H8 H 0 1 N N N N N N -49.945 18.404 7.334 2.340 2.707 0.829 H8 YGQ 34 YGQ H9 H9 H 0 1 N N N N N N -50.591 17.517 3.718 4.847 2.991 0.377 H9 YGQ 35 YGQ H10 H10 H 0 1 N N N N N N -50.038 18.807 4.733 5.602 1.891 -0.644 H10 YGQ 36 YGQ H11 H11 H 0 1 N N N N N N -54.224 12.293 8.211 -1.627 -5.706 -0.259 H11 YGQ 37 YGQ H12 H12 H 0 1 N N N N N N -53.011 12.763 7.067 0.005 -5.758 0.138 H12 YGQ 38 YGQ H13 H13 H 0 1 N N N N N N -46.354 14.434 8.896 1.512 -0.137 3.642 H13 YGQ 39 YGQ H14 H14 H 0 1 N N N N N N -46.889 15.864 9.714 2.564 -1.432 3.446 H14 YGQ 40 YGQ H15 H15 H 0 1 N N N N N N -52.874 16.051 10.191 -0.655 1.827 -2.534 H15 YGQ 41 YGQ H16 H16 H 0 1 N N N N N N -52.568 18.251 9.625 -0.602 3.524 -0.702 H16 YGQ 42 YGQ H17 H17 H 0 1 N N N N N N -50.727 17.715 14.177 -4.479 -0.071 1.547 H17 YGQ 43 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YGQ N13 C11 SING N N 1 YGQ N10 C11 DOUB N N 2 YGQ N10 C09 SING N N 3 YGQ C11 N12 SING N N 4 YGQ C08 C09 SING N N 5 YGQ C08 C14 SING N N 6 YGQ C08 N07 SING N N 7 YGQ C09 C04 SING N N 8 YGQ N12 C04 SING N N 9 YGQ C14 O15 SING N N 10 YGQ N07 C06 DOUB N N 11 YGQ N18 C16 SING N N 12 YGQ C04 N05 SING N N 13 YGQ C04 C03 SING N N 14 YGQ C06 N05 SING N N 15 YGQ C06 N19 SING N N 16 YGQ N05 C01 SING N N 17 YGQ O15 C16 SING N N 18 YGQ O21 C03 SING N N 19 YGQ C16 O17 DOUB N N 20 YGQ C03 O20 SING N N 21 YGQ C03 C02 SING N N 22 YGQ C01 C02 SING N N 23 YGQ C02 O22 SING N N 24 YGQ O22 S23 SING N N 25 YGQ O24 S23 DOUB N N 26 YGQ S23 O25 DOUB N N 27 YGQ S23 O26 SING N N 28 YGQ C01 H1 SING N N 29 YGQ C01 H2 SING N N 30 YGQ C02 H3 SING N N 31 YGQ C08 H4 SING N N 32 YGQ C09 H5 SING N N 33 YGQ C14 H6 SING N N 34 YGQ C14 H7 SING N N 35 YGQ N12 H8 SING N N 36 YGQ N13 H9 SING N N 37 YGQ N13 H10 SING N N 38 YGQ N18 H11 SING N N 39 YGQ N18 H12 SING N N 40 YGQ N19 H13 SING N N 41 YGQ N19 H14 SING N N 42 YGQ O20 H15 SING N N 43 YGQ O21 H16 SING N N 44 YGQ O26 H17 SING N N 45 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YGQ SMILES ACDLabs 12.01 "NC(=O)OCC1N=C(N)N2CC(OS(=O)(=O)O)C(O)(O)C32NC(N)=NC13" YGQ InChI InChI 1.06 "InChI=1S/C10H17N7O8S/c11-6-15-5-3(2-24-8(13)18)14-7(12)17-1-4(25-26(21,22)23)10(19,20)9(5,17)16-6/h3-5,19-20H,1-2H2,(H2,12,14)(H2,13,18)(H3,11,15,16)(H,21,22,23)/t3-,4+,5-,9-/m0/s1" YGQ InChIKey InChI 1.06 ARSXTTJGWGCRRR-XXKOCQOQSA-N YGQ SMILES_CANONICAL CACTVS 3.385 "NC(=O)OC[C@@H]1N=C(N)N2C[C@@H](O[S](O)(=O)=O)C(O)(O)[C@@]23NC(=N[C@@H]13)N" YGQ SMILES CACTVS 3.385 "NC(=O)OC[CH]1N=C(N)N2C[CH](O[S](O)(=O)=O)C(O)(O)[C]23NC(=N[CH]13)N" YGQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1[C@H](C([C@@]23N1C(=N[C@H]([C@@H]2N=C(N3)N)COC(=O)N)N)(O)O)OS(=O)(=O)O" YGQ SMILES "OpenEye OEToolkits" 2.0.7 "C1C(C(C23N1C(=NC(C2N=C(N3)N)COC(=O)N)N)(O)O)OS(=O)(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YGQ "SYSTEMATIC NAME" ACDLabs 12.01 "[(3aS,4R,7R,9R,10aS)-2,6-diamino-10,10-dihydroxy-9-(sulfooxy)-3a,4,9,10-tetrahydro-1H,8H-pyrrolo[1,2-c]purin-4-yl]methyl carbamate" YGQ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(3~{a}~{S},4~{R},9~{R},10~{a}~{S})-2,6-bis(azanyl)-10,10-bis(oxidanyl)-9-sulfooxy-3~{a},4,8,9-tetrahydro-1~{H}-pyrrolo[1,2-c]purin-4-yl]methyl carbamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YGQ "Create component" 2023-12-04 RCSB YGQ "Initial release" 2025-05-07 RCSB YGQ "Modify name" 2025-11-11 RCSB #