data_YGT # _chem_comp.id YGT _chem_comp.name "(R)-(cyclohexylamino){3-[(3R,4R)-3-{4-[(1R,3R,4R,6R)-6-{[(R)-(cyclohexylamino)(hydroxy)methoxy]methyl}-1-azabicyclo[2.2.2]octan-3-yl]butyl}piperidin-4-yl]propoxy}methanol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C34 H50 N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-14 _chem_comp.pdbx_modified_date 2024-12-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 578.785 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YGT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7G56 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YGT C02 C1 C 0 1 N N N N N N -15.139 7.356 46.467 6.617 1.223 0.209 C02 YGT 1 YGT C04 C2 C 0 1 N N R N N N -13.413 10.304 47.235 4.026 -1.378 0.558 C04 YGT 2 YGT C05 C3 C 0 1 N N N N N N -13.645 12.606 47.690 4.138 -3.713 -0.074 C05 YGT 3 YGT C06 C4 C 0 1 N N S N N N -12.768 12.861 46.427 3.066 -4.080 0.956 C06 YGT 4 YGT C07 C5 C 0 1 N N S N N N -11.700 11.740 46.232 3.156 -3.102 2.135 C07 YGT 5 YGT C11 C6 C 0 1 N N N N N N -11.673 11.452 48.719 5.592 -2.856 1.663 C11 YGT 6 YGT O12 O1 O 0 1 N N N N N N -13.991 8.058 46.616 5.802 0.179 -0.034 O12 YGT 7 YGT C15 C7 C 0 1 N N N N N N -10.814 11.825 47.493 4.561 -3.198 2.743 C15 YGT 8 YGT C16 C8 C 0 1 N N N N N N -13.681 5.887 45.084 8.395 2.749 -0.461 C16 YGT 9 YGT C17 C9 C 0 1 N N N N N N -13.561 4.386 44.729 9.664 2.616 -1.305 C17 YGT 10 YGT C18 C10 C 0 1 N N N N N N -13.432 6.803 43.870 7.673 4.048 -0.827 C18 YGT 11 YGT C19 C11 C 0 1 N N N N N N -12.179 6.459 43.021 8.595 5.238 -0.554 C19 YGT 12 YGT C20 C12 C 0 1 N N N N N N -12.200 4.139 44.059 10.586 3.806 -1.032 C20 YGT 13 YGT C21 C13 C 0 1 N N N N N N -12.044 4.945 42.760 9.864 5.104 -1.398 C21 YGT 14 YGT N01 N1 N 0 1 N N S N N N -13.154 11.326 48.339 4.897 -2.551 0.405 N01 YGT 15 YGT C03 C14 C 0 1 N N N N N N -13.604 13.227 45.264 1.734 -3.987 0.336 C03 YGT 16 YGT C08 C15 C 0 1 N N N N N N -14.346 13.437 44.332 0.672 -3.912 -0.159 C08 YGT 17 YGT C09 C16 C 0 1 N N N N N N -12.293 10.298 46.180 2.950 -1.677 1.605 C09 YGT 18 YGT N10 N2 N 0 1 N N N N N N -14.988 6.192 45.712 7.512 1.610 -0.722 N10 YGT 19 YGT O13 O2 O 0 1 N N N N N N -16.202 7.742 46.997 6.543 1.820 1.265 O13 YGT 20 YGT C14 C17 C 0 1 N N N N N N -13.928 8.961 47.718 4.859 -0.178 1.011 C14 YGT 21 YGT N51 N3 N 0 1 N N R N N N -16.503 12.496 39.369 -4.378 -1.663 -1.676 N51 YGT 22 YGT C52 C18 C 0 1 N N N N N N -14.515 12.275 35.953 -6.552 1.136 0.486 C52 YGT 23 YGT C53 C19 C 0 1 N N N N N N -16.081 13.801 42.367 -1.636 -3.750 -1.233 C53 YGT 24 YGT C54 C20 C 0 1 N N R N N N -15.215 13.236 39.449 -4.166 -1.585 -0.225 C54 YGT 25 YGT C55 C21 C 0 1 N N N N N N -17.220 12.469 40.688 -3.203 -2.228 -2.352 C55 YGT 26 YGT C56 C22 C 0 1 N N R N N N -17.147 13.859 41.356 -2.968 -3.657 -1.853 C56 YGT 27 YGT C57 C23 C 0 1 N N R N N N -16.930 14.891 40.239 -4.046 -4.003 -0.818 C57 YGT 28 YGT C58 C24 C 0 1 N N N N N N -15.252 13.636 43.242 -0.574 -3.825 -0.739 C58 YGT 29 YGT C59 C25 C 0 1 N N N N N N -15.495 14.741 39.702 -3.958 -2.995 0.335 C59 YGT 30 YGT N60 N4 N 0 1 N N N N N N -15.088 12.495 34.691 -6.729 2.420 0.115 N60 YGT 31 YGT C61 C26 C 0 1 N N N N N N -17.355 13.254 38.407 -5.589 -2.435 -1.990 C61 YGT 32 YGT O62 O3 O 0 1 N N N N N N -15.213 12.750 37.040 -5.518 0.429 -0.007 O62 YGT 33 YGT O63 O4 O 0 1 N N N N N N -13.419 11.696 36.114 -7.326 0.617 1.266 O63 YGT 34 YGT C64 C27 C 0 1 N N N N N N -14.388 13.051 38.177 -5.390 -0.948 0.437 C64 YGT 35 YGT C65 C28 C 0 1 N N N N N N -17.920 14.506 39.122 -5.421 -3.889 -1.486 C65 YGT 36 YGT C66 C29 C 0 1 N N N N N N -14.293 12.834 33.473 -7.854 3.189 0.652 C66 YGT 37 YGT C67 C30 C 0 1 N N N N N N -12.863 12.235 33.595 -7.516 4.681 0.613 C67 YGT 38 YGT C68 C31 C 0 1 N N N N N N -15.069 12.508 32.164 -9.101 2.926 -0.195 C68 YGT 39 YGT C69 C32 C 0 1 N N N N N N -14.177 12.345 30.910 -10.276 3.730 0.365 C69 YGT 40 YGT C70 C33 C 0 1 N N N N N N -12.103 12.126 32.258 -8.692 5.484 1.173 C70 YGT 41 YGT C71 C34 C 0 1 N N N N N N -12.975 11.429 31.202 -9.939 5.222 0.327 C71 YGT 42 YGT H7 H5 H 0 1 N N N N N N -14.271 10.727 46.691 3.551 -1.151 -0.397 H7 YGT 43 YGT H11 H9 H 0 1 N N N N N N -13.543 13.446 48.393 4.814 -4.557 -0.212 H11 YGT 44 YGT H12 H10 H 0 1 N N N N N N -14.700 12.498 47.398 3.662 -3.470 -1.024 H12 YGT 45 YGT H15 H13 H 0 1 N N N N N N -12.186 13.763 46.668 3.233 -5.097 1.311 H15 YGT 46 YGT H19 H17 H 0 1 N N N N N N -11.103 11.938 45.330 2.405 -3.348 2.885 H19 YGT 47 YGT H23 H21 H 0 1 N N N N N N -11.564 12.234 49.485 6.174 -1.989 1.977 H23 YGT 48 YGT H25 H22 H 0 1 N N N N N N -11.323 10.491 49.124 6.258 -3.706 1.515 H25 YGT 49 YGT H33 H27 H 0 1 N N N N N N -11.283 6.807 43.556 8.081 6.163 -0.814 H33 YGT 50 YGT H3 H28 H 0 1 N N N N N N -12.253 6.979 42.055 8.862 5.256 0.503 H3 YGT 51 YGT H34 H29 H 0 1 N N N N N N -11.402 4.432 44.757 10.853 3.824 0.025 H34 YGT 52 YGT H28 H30 H 0 1 N N N N N N -12.108 3.068 43.826 11.490 3.711 -1.633 H28 YGT 53 YGT H31 H32 H 0 1 N N N N N N -11.052 4.743 42.329 9.597 5.086 -2.455 H31 YGT 54 YGT H35 H33 H 0 1 N N N N N N -12.823 4.633 42.049 10.521 5.952 -1.204 H35 YGT 55 YGT H49 H48 H 0 1 N N N N N N -12.700 10.081 45.182 3.032 -0.966 2.427 H49 YGT 56 YGT H50 H49 H 0 1 N N N N N N -11.525 9.552 46.433 1.963 -1.597 1.148 H50 YGT 57 YGT H53 H52 H 0 1 N N N N N N -15.759 5.566 45.595 7.572 1.133 -1.565 H53 YGT 58 YGT H59 H58 H 0 1 N N N N N N -13.248 8.560 48.484 4.201 0.668 1.210 H59 YGT 59 YGT H60 H59 H 0 1 N N N N N N -14.932 9.086 48.149 5.404 -0.436 1.919 H60 YGT 60 YGT H73 H73 H 0 1 N N N N N N -14.634 12.849 40.299 -3.284 -0.978 -0.019 H73 YGT 61 YGT H77 H77 H 0 1 N N N N N N -18.274 12.198 40.525 -3.374 -2.243 -3.429 H77 YGT 62 YGT H78 H78 H 0 1 N N N N N N -16.747 11.724 41.345 -2.328 -1.617 -2.132 H78 YGT 63 YGT H81 H81 H 0 1 N N N N N N -18.110 14.065 41.846 -3.030 -4.352 -2.691 H81 YGT 64 YGT H85 H85 H 0 1 N N N N N N -17.115 15.914 40.599 -3.894 -5.015 -0.443 H85 YGT 65 YGT H93 H93 H 0 1 N N N N N N -14.780 15.132 40.441 -2.976 -3.060 0.804 H93 YGT 66 YGT H94 H94 H 0 1 N N N N N N -15.391 15.300 38.761 -4.730 -3.212 1.073 H94 YGT 67 YGT H97 H97 H 0 1 N N N N N N -16.081 12.421 34.603 -6.110 2.834 -0.507 H97 YGT 68 YGT H101 H101 H 0 0 N N N N N N -18.184 12.617 38.066 -6.450 -1.975 -1.504 H101 YGT 69 YGT H102 H102 H 0 0 N N N N N N -16.750 13.563 37.542 -5.744 -2.447 -3.069 H102 YGT 70 YGT H109 H109 H 0 0 N N N N N N -13.679 12.224 38.331 -6.284 -1.504 0.158 H109 YGT 71 YGT H110 H110 H 0 0 N N N N N N -13.831 13.978 37.977 -5.271 -0.971 1.520 H110 YGT 72 YGT H113 H113 H 0 0 N N N N N N -18.905 14.278 39.556 -5.483 -4.593 -2.317 H113 YGT 73 YGT H114 H114 H 0 0 N N N N N N -18.018 15.335 38.406 -6.201 -4.114 -0.758 H114 YGT 74 YGT H117 H117 H 0 0 N N N N N N -14.162 13.926 33.480 -8.043 2.886 1.681 H117 YGT 75 YGT H121 H121 H 0 0 N N N N N N -12.278 12.875 34.272 -6.628 4.868 1.216 H121 YGT 76 YGT H122 H122 H 0 0 N N N N N N -12.948 11.226 34.026 -7.327 4.984 -0.417 H122 YGT 77 YGT H125 H125 H 0 0 N N N N N N -15.781 13.325 31.975 -8.912 3.230 -1.225 H125 YGT 78 YGT H126 H126 H 0 0 N N N N N N -15.621 11.569 32.317 -9.342 1.864 -0.167 H126 YGT 79 YGT H129 H129 H 0 0 N N N N N N -13.808 13.334 30.600 -11.165 3.543 -0.238 H129 YGT 80 YGT H130 H130 H 0 0 N N N N N N -14.775 11.906 30.098 -10.466 3.427 1.395 H130 YGT 81 YGT H133 H133 H 0 0 N N N N N N -11.183 11.543 32.411 -8.881 5.181 2.203 H133 YGT 82 YGT H134 H134 H 0 0 N N N N N N -11.843 13.135 31.905 -8.451 6.547 1.146 H134 YGT 83 YGT H137 H137 H 0 0 N N N N N N -12.394 11.269 30.282 -9.749 5.525 -0.703 H137 YGT 84 YGT H138 H138 H 0 0 N N N N N N -13.327 10.460 31.587 -10.776 5.794 0.726 H138 YGT 85 YGT H4 H4 H 0 1 N N N N N N -10.428 12.849 47.607 4.650 -2.493 3.569 H4 YGT 86 YGT H5 H45 H 0 1 N N N N N N -9.971 11.124 47.403 4.733 -4.211 3.106 H5 YGT 87 YGT H6 H60 H 0 1 N N N N N N -12.895 6.107 45.821 8.662 2.767 0.596 H6 YGT 88 YGT H9 H61 H 0 1 N N N N N N -13.636 3.783 45.646 10.178 1.691 -1.044 H9 YGT 89 YGT H10 H62 H 0 1 N N N N N N -14.369 4.104 44.038 9.397 2.598 -2.362 H10 YGT 90 YGT H13 H63 H 0 1 N N N N N N -13.319 7.833 44.240 7.406 4.030 -1.883 H13 YGT 91 YGT H14 H14 H 0 1 N N N N N N -14.313 6.744 43.214 6.769 4.143 -0.225 H14 YGT 92 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YGT C04 H7 SING N N 1 YGT C05 H11 SING N N 2 YGT C05 H12 SING N N 3 YGT C06 H15 SING N N 4 YGT C07 H19 SING N N 5 YGT C11 H23 SING N N 6 YGT C11 H25 SING N N 7 YGT C19 H33 SING N N 8 YGT C19 H3 SING N N 9 YGT C20 H34 SING N N 10 YGT C20 H28 SING N N 11 YGT C21 H31 SING N N 12 YGT C21 H35 SING N N 13 YGT C09 H49 SING N N 14 YGT C09 H50 SING N N 15 YGT N10 H53 SING N N 16 YGT C14 H59 SING N N 17 YGT C14 H60 SING N N 18 YGT C54 H73 SING N N 19 YGT C55 H77 SING N N 20 YGT C55 H78 SING N N 21 YGT C56 H81 SING N N 22 YGT C57 H85 SING N N 23 YGT C59 H93 SING N N 24 YGT C59 H94 SING N N 25 YGT N60 H97 SING N N 26 YGT C61 H101 SING N N 27 YGT C61 H102 SING N N 28 YGT C64 H109 SING N N 29 YGT C64 H110 SING N N 30 YGT C65 H113 SING N N 31 YGT C65 H114 SING N N 32 YGT C66 H117 SING N N 33 YGT C67 H121 SING N N 34 YGT C67 H122 SING N N 35 YGT C68 H125 SING N N 36 YGT C68 H126 SING N N 37 YGT C69 H129 SING N N 38 YGT C69 H130 SING N N 39 YGT C70 H133 SING N N 40 YGT C70 H134 SING N N 41 YGT C71 H137 SING N N 42 YGT C71 H138 SING N N 43 YGT C70 C71 SING N N 44 YGT C71 C69 SING N N 45 YGT C69 C68 SING N N 46 YGT C68 C66 SING N N 47 YGT C66 C67 SING N N 48 YGT C67 C70 SING N N 49 YGT C66 N60 SING N N 50 YGT N60 C52 SING N N 51 YGT C52 O63 DOUB N N 52 YGT C52 O62 SING N N 53 YGT O62 C64 SING N N 54 YGT C64 C54 SING N N 55 YGT C54 C59 SING N N 56 YGT C54 N51 SING N N 57 YGT C59 C57 SING N N 58 YGT C57 C65 SING N N 59 YGT C65 C61 SING N N 60 YGT C61 N51 SING N N 61 YGT N51 C55 SING N N 62 YGT C55 C56 SING N N 63 YGT C56 C57 SING N N 64 YGT C56 C53 SING N N 65 YGT C53 C58 TRIP N N 66 YGT C58 C08 SING N N 67 YGT C08 C03 TRIP N N 68 YGT C03 C06 SING N N 69 YGT C06 C05 SING N N 70 YGT C05 N01 SING N N 71 YGT N01 C11 SING N N 72 YGT C11 C15 SING N N 73 YGT C15 C07 SING N N 74 YGT C07 C06 SING N N 75 YGT C07 C09 SING N N 76 YGT C09 C04 SING N N 77 YGT C04 C14 SING N N 78 YGT C14 O12 SING N N 79 YGT O12 C02 SING N N 80 YGT C02 O13 DOUB N N 81 YGT C02 N10 SING N N 82 YGT N10 C16 SING N N 83 YGT C16 C17 SING N N 84 YGT C17 C20 SING N N 85 YGT C20 C21 SING N N 86 YGT C21 C19 SING N N 87 YGT C19 C18 SING N N 88 YGT C18 C16 SING N N 89 YGT C15 H4 SING N N 90 YGT C15 H5 SING N N 91 YGT C16 H6 SING N N 92 YGT C17 H9 SING N N 93 YGT C17 H10 SING N N 94 YGT C18 H13 SING N N 95 YGT C18 H14 SING N N 96 YGT C04 N01 SING N N 97 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YGT SMILES ACDLabs 12.01 "O=C(NC1CCCCC1)OCC1CC2CCN1CC2C#CC#CC1CN2CCC1CC2COC(=O)NC1CCCCC1" YGT InChI InChI 1.06 "InChI=1S/C34H50N4O4/c39-33(35-29-11-3-1-4-12-29)41-23-31-19-25-15-17-37(31)21-27(25)9-7-8-10-28-22-38-18-16-26(28)20-32(38)24-42-34(40)36-30-13-5-2-6-14-30/h25-32H,1-6,11-24H2,(H,35,39)(H,36,40)/t25-,26+,27-,28+,31-,32-/m1/s1" YGT InChIKey InChI 1.06 AMBLGDNBWGSPMN-PWUUJYBQSA-N YGT SMILES_CANONICAL CACTVS 3.385 "O=C(NC1CCCCC1)OC[C@H]2C[C@@H]3CC[N@]2C[C@@H]3C#CC#C[C@@H]4C[N@]5CC[C@@H]4C[C@@H]5COC(=O)NC6CCCCC6" YGT SMILES CACTVS 3.385 "O=C(NC1CCCCC1)OC[CH]2C[CH]3CC[N]2C[CH]3C#CC#C[CH]4C[N]5CC[CH]4C[CH]5COC(=O)NC6CCCCC6" YGT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1CCC(CC1)NC(=O)OC[C@H]2C[C@H]3CC[N@@]2C[C@H]3C#CC#C[C@H]4CN5CC[C@H]4CC5COC(=O)NC6CCCCC6" YGT SMILES "OpenEye OEToolkits" 2.0.7 "C1CCC(CC1)NC(=O)OCC2CC3CCN2CC3C#CC#CC4CN5CCC4CC5COC(=O)NC6CCCCC6" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YGT "SYSTEMATIC NAME" ACDLabs 12.01 "[(1S,2R,4S,5S)-5-{4-[(1R,3R,4R,6R)-6-{[(cyclohexylcarbamoyl)oxy]methyl}-1-azabicyclo[2.2.2]octan-3-yl]buta-1,3-diyn-1-yl}-1-azabicyclo[2.2.2]octan-2-yl]methyl cyclohexylcarbamate" YGT "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(4~{S},5~{S})-5-[4-[(1~{R},3~{R},4~{R},6~{R})-6-(cyclohexylcarbamoyloxymethyl)-1-azabicyclo[2.2.2]octan-3-yl]buta-1,3-diynyl]-1-azabicyclo[2.2.2]octan-2-yl]methyl ~{N}-cyclohexylcarbamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YGT "Create component" 2023-06-14 RCSB YGT "Initial release" 2024-12-18 RCSB #