data_YGU # _chem_comp.id YGU _chem_comp.name "(3aS,4R,7R,9R,10aS)-2,6-diamino-10,10-dihydroxy-4-(hydroxymethyl)-3a,4,9,10-tetrahydro-1H,8H-pyrrolo[1,2-c]purin-9-yl hydrogen sulfate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H16 N6 O7 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-12-04 _chem_comp.pdbx_modified_date 2025-05-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 352.324 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YGU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8V65 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YGU C01 C1 C 0 1 N N N N N N 9.538 50.999 11.851 0.462 1.403 0.256 C01 YGU 1 YGU C02 C2 C 0 1 N N R N N N 10.333 52.111 11.080 1.286 0.487 -0.686 C02 YGU 2 YGU C03 C3 C 0 1 N N N N N N 11.151 52.843 12.283 0.171 -0.327 -1.404 C03 YGU 3 YGU C04 C4 C 0 1 N N S N N N 10.988 51.852 13.531 -0.857 -0.513 -0.290 C04 YGU 4 YGU C06 C5 C 0 1 N N N N N N 11.064 49.404 13.072 -1.647 0.862 1.625 C06 YGU 5 YGU C08 C6 C 0 1 N N R N N N 12.613 50.162 14.727 -3.107 0.603 -0.252 C08 YGU 6 YGU C09 C7 C 0 1 N N S N N N 12.201 51.653 14.515 -2.302 -0.574 -0.795 C09 YGU 7 YGU C11 C8 C 0 1 N N N N N N 10.440 52.292 15.779 -1.871 -2.454 0.394 C11 YGU 8 YGU C14 C9 C 0 1 N N N N N N 14.121 50.182 14.451 -2.692 1.874 -0.996 C14 YGU 9 YGU N05 N1 N 0 1 N N N N N N 10.528 50.692 12.846 -0.716 0.623 0.632 N05 YGU 10 YGU N07 N2 N 0 1 N N N N N N 11.995 49.104 13.934 -2.893 0.802 1.185 N07 YGU 11 YGU N10 N3 N 0 1 N N N N N N 11.736 51.990 15.878 -2.812 -1.840 -0.251 N10 YGU 12 YGU N12 N4 N 0 1 N N N N N N 9.903 52.254 14.469 -0.676 -1.783 0.416 N12 YGU 13 YGU N13 N5 N 0 1 N N N N N N 9.664 52.642 16.865 -2.055 -3.673 1.001 N13 YGU 14 YGU N16 N6 N 0 1 N N N N N N 10.485 48.394 12.303 -1.313 1.132 2.931 N16 YGU 15 YGU O15 O1 O 0 1 N N N N N N 14.307 50.534 13.100 -3.540 2.955 -0.600 O15 YGU 16 YGU O17 O2 O 0 1 N N N N N N 12.488 53.085 12.003 -0.383 0.415 -2.492 O17 YGU 17 YGU O18 O3 O 0 1 N N N N N N 10.601 54.063 12.661 0.670 -1.589 -1.853 O18 YGU 18 YGU O19 O4 O 0 1 N N N N N N 9.566 52.991 10.395 2.146 -0.374 0.063 O19 YGU 19 YGU O21 O5 O 0 1 N N N N N N 11.190 54.553 9.534 3.543 1.269 1.225 O21 YGU 20 YGU O22 O6 O 0 1 N N N N N N 8.914 54.624 8.695 4.324 -0.912 0.788 O22 YGU 21 YGU O23 O7 O 0 1 N N N N N N 10.365 52.775 8.125 3.906 0.738 -1.043 O23 YGU 22 YGU S20 S1 S 0 1 N N N N N N 10.066 53.855 9.007 3.571 0.142 0.203 S20 YGU 23 YGU H1 H1 H 0 1 N N N N N N 8.608 51.384 12.295 1.046 1.655 1.142 H1 YGU 24 YGU H2 H2 H 0 1 N N N N N N 9.308 50.134 11.212 0.162 2.311 -0.266 H2 YGU 25 YGU H3 H3 H 0 1 N N N N N N 11.068 51.621 10.424 1.858 1.079 -1.401 H3 YGU 26 YGU H4 H4 H 0 1 N N N N N N 12.471 49.930 15.793 -4.167 0.418 -0.431 H4 YGU 27 YGU H5 H5 H 0 1 N N N N N N 13.063 52.262 14.205 -2.324 -0.578 -1.885 H5 YGU 28 YGU H6 H6 H 0 1 N N N N N N 14.549 49.187 14.641 -1.658 2.116 -0.753 H6 YGU 29 YGU H7 H7 H 0 1 N N N N N N 14.611 50.922 15.101 -2.785 1.714 -2.070 H7 YGU 30 YGU H8 H8 H 0 1 N N N N N N 8.958 52.461 14.217 0.146 -2.095 0.827 H8 YGU 31 YGU H9 H9 H 0 1 N N N N N N 10.069 52.678 17.778 -2.920 -4.111 0.958 H9 YGU 32 YGU H10 H10 H 0 1 N N N N N N 8.696 52.860 16.739 -1.321 -4.096 1.473 H10 YGU 33 YGU H11 H11 H 0 1 N N N N N N 10.785 47.446 12.415 -2.010 1.291 3.586 H11 YGU 34 YGU H12 H12 H 0 1 N N N N N N 9.770 48.618 11.640 -0.381 1.163 3.197 H12 YGU 35 YGU H13 H13 H 0 1 N N N N N N 15.236 50.554 12.902 -3.334 3.795 -1.033 H13 YGU 36 YGU H14 H14 H 0 1 N N N N N N 12.896 53.511 12.748 0.256 0.636 -3.184 H14 YGU 37 YGU H15 H15 H 0 1 N N N N N N 11.118 54.440 13.363 1.389 -1.521 -2.496 H15 YGU 38 YGU H16 H16 H 0 1 N N N N N N 11.990 54.167 9.196 4.407 1.671 1.391 H16 YGU 39 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YGU O23 S20 DOUB N N 1 YGU O22 S20 DOUB N N 2 YGU S20 O21 SING N N 3 YGU S20 O19 SING N N 4 YGU O19 C02 SING N N 5 YGU C02 C01 SING N N 6 YGU C02 C03 SING N N 7 YGU C01 N05 SING N N 8 YGU O17 C03 SING N N 9 YGU C03 O18 SING N N 10 YGU C03 C04 SING N N 11 YGU N16 C06 SING N N 12 YGU N05 C06 SING N N 13 YGU N05 C04 SING N N 14 YGU C06 N07 DOUB N N 15 YGU O15 C14 SING N N 16 YGU C04 N12 SING N N 17 YGU C04 C09 SING N N 18 YGU N07 C08 SING N N 19 YGU C14 C08 SING N N 20 YGU N12 C11 SING N N 21 YGU C09 C08 SING N N 22 YGU C09 N10 SING N N 23 YGU C11 N10 DOUB N N 24 YGU C11 N13 SING N N 25 YGU C01 H1 SING N N 26 YGU C01 H2 SING N N 27 YGU C02 H3 SING N N 28 YGU C08 H4 SING N N 29 YGU C09 H5 SING N N 30 YGU C14 H6 SING N N 31 YGU C14 H7 SING N N 32 YGU N12 H8 SING N N 33 YGU N13 H9 SING N N 34 YGU N13 H10 SING N N 35 YGU N16 H11 SING N N 36 YGU N16 H12 SING N N 37 YGU O15 H13 SING N N 38 YGU O17 H14 SING N N 39 YGU O18 H15 SING N N 40 YGU O21 H16 SING N N 41 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YGU SMILES ACDLabs 12.01 "O=S(=O)(O)OC1CN2C(N)=NC(CO)C3N=C(N)NC32C1(O)O" YGU InChI InChI 1.06 "InChI=1S/C9H16N6O7S/c10-6-13-5-3(2-16)12-7(11)15-1-4(22-23(19,20)21)9(17,18)8(5,15)14-6/h3-5,16-18H,1-2H2,(H2,11,12)(H3,10,13,14)(H,19,20,21)/t3-,4+,5-,8-/m0/s1" YGU InChIKey InChI 1.06 AJLCXXKDNUGKKH-WVBYAZCYSA-N YGU SMILES_CANONICAL CACTVS 3.385 "NC1=N[C@H]2[C@H](CO)N=C(N)N3C[C@@H](O[S](O)(=O)=O)C(O)(O)[C@]23N1" YGU SMILES CACTVS 3.385 "NC1=N[CH]2[CH](CO)N=C(N)N3C[CH](O[S](O)(=O)=O)C(O)(O)[C]23N1" YGU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1[C@H](C([C@@]23N1C(=N[C@H]([C@@H]2N=C(N3)N)CO)N)(O)O)OS(=O)(=O)O" YGU SMILES "OpenEye OEToolkits" 2.0.7 "C1C(C(C23N1C(=NC(C2N=C(N3)N)CO)N)(O)O)OS(=O)(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YGU "SYSTEMATIC NAME" ACDLabs 12.01 "(3aS,4R,7R,9R,10aS)-2,6-diamino-10,10-dihydroxy-4-(hydroxymethyl)-3a,4,9,10-tetrahydro-1H,8H-pyrrolo[1,2-c]purin-9-yl hydrogen sulfate" YGU "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(3~{a}~{S},4~{R},9~{R},10~{a}~{S})-2,6-bis(azanyl)-4-(hydroxymethyl)-10,10-bis(oxidanyl)-3~{a},4,8,9-tetrahydro-1~{H}-pyrrolo[1,2-c]purin-9-yl] hydrogen sulfate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YGU "Create component" 2023-12-04 RCSB YGU "Initial release" 2025-05-07 RCSB #