data_YH8 # _chem_comp.id YH8 _chem_comp.name "2-[2-(3,6-dihydro-2~{H}-pyran-4-yl)-5-ethyl-7-oxidanylidene-6-[4-(3-oxidanylpyridin-2-yl)carbonylpiperazin-1-yl]-[1,2,4]triazolo[1,5-a]pyrimidin-4-yl]-~{N}-[2-methyl-4-(trifluoromethyl)phenyl]ethanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C32 H33 F3 N8 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-16 _chem_comp.pdbx_modified_date 2024-04-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 666.650 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YH8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PFL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YH8 C1 C1 C 0 1 N N N N N N -32.390 -7.129 22.888 4.813 6.246 0.863 C1 YH8 1 YH8 C2 C2 C 0 1 N N N N N N -31.324 -6.102 23.086 3.796 5.231 0.424 C2 YH8 2 YH8 C3 C3 C 0 1 N N N N N N -30.265 -6.342 23.905 2.539 5.271 0.815 C3 YH8 3 YH8 C41 C4 C 0 1 Y N N N N N -19.501 -2.584 25.968 -6.882 -1.638 0.768 C41 YH8 4 YH8 C43 C5 C 0 1 Y N N N N N -17.831 -1.775 24.594 -6.208 -3.138 2.386 C43 YH8 5 YH8 C44 C6 C 0 1 Y N N N N N -17.144 -2.964 24.630 -7.388 -3.858 2.271 C44 YH8 6 YH8 C45 C7 C 0 1 Y N N N N N -17.667 -4.003 25.376 -8.347 -3.450 1.362 C45 YH8 7 YH8 C46 C8 C 0 1 Y N N N N N -18.866 -3.823 26.060 -8.096 -2.313 0.597 C46 YH8 8 YH8 C48 C9 C 0 1 N N N N N N -26.382 0.569 25.055 -0.989 -0.108 -3.809 C48 YH8 9 YH8 C11 C10 C 0 1 N N N N N N -26.579 -1.776 24.172 -0.549 0.743 -1.522 C11 YH8 10 YH8 C12 C11 C 0 1 N N N N N N -25.779 -2.694 24.815 -1.591 1.279 -0.840 C12 YH8 11 YH8 C13 C12 C 0 1 N N N N N N -26.193 -4.052 25.075 -1.390 2.447 -0.067 C13 YH8 12 YH8 C16 C13 C 0 1 N N N N N N -26.072 -0.382 23.909 -0.749 -0.500 -2.350 C16 YH8 13 YH8 C19 C14 C 0 1 N N N N N N -24.248 -2.234 26.708 -3.982 1.366 -1.561 C19 YH8 14 YH8 C20 C15 C 0 1 N N N N N N -23.006 -1.376 26.907 -5.146 1.470 -0.567 C20 YH8 15 YH8 C22 C16 C 0 1 N N N N N N -22.121 -2.048 24.728 -4.257 -0.542 0.683 C22 YH8 16 YH8 C23 C17 C 0 1 N N N N N N -23.346 -2.921 24.461 -3.094 -0.646 -0.311 C23 YH8 17 YH8 C24 C18 C 0 1 Y N N N N N -31.496 1.219 26.028 4.740 -3.034 -1.646 C24 YH8 18 YH8 C25 C19 C 0 1 Y N N N N N -32.588 1.664 26.762 5.325 -4.025 -0.883 C25 YH8 19 YH8 C26 C20 C 0 1 Y N N N N N -33.883 1.575 26.276 5.348 -3.916 0.496 C26 YH8 20 YH8 C27 C21 C 0 1 Y N N N N N -34.098 1.024 25.019 4.786 -2.815 1.115 C27 YH8 21 YH8 C28 C22 C 0 1 Y N N N N N -33.043 0.561 24.254 4.200 -1.819 0.357 C28 YH8 22 YH8 C29 C23 C 0 1 Y N N N N N -31.741 0.654 24.749 4.180 -1.924 -1.028 C29 YH8 23 YH8 C30 C24 C 0 1 N N N N N N -35.034 2.047 27.107 5.987 -5.000 1.325 C30 YH8 24 YH8 C4 C25 C 0 1 N N N N N N -30.079 -7.675 24.605 2.015 6.345 1.729 C4 YH8 25 YH8 C5 C26 C 0 1 N N N N N N -31.380 -8.505 24.530 3.188 7.051 2.415 C5 YH8 26 YH8 O6 O1 O 0 1 N N N N N N -31.962 -8.447 23.226 4.160 7.389 1.418 O6 YH8 27 YH8 C7 C27 C 0 1 Y N N N N N -29.266 -5.305 24.122 1.610 4.225 0.338 C7 YH8 28 YH8 N8 N1 N 0 1 Y N N N N N -27.474 -4.341 24.606 -0.170 3.011 -0.016 N8 YH8 29 YH8 C9 C28 C 0 1 Y N N N N N -28.272 -3.462 23.975 0.872 2.467 -0.703 C9 YH8 30 YH8 N10 N2 N 0 1 N N N N N N -27.874 -2.165 23.746 0.683 1.335 -1.462 N10 YH8 31 YH8 N14 N3 N 0 1 Y N N N N N -28.093 -5.563 24.710 0.332 4.141 0.645 N14 YH8 32 YH8 N15 N4 N 0 1 Y N N N N N -29.442 -4.005 23.685 1.934 3.212 -0.478 N15 YH8 33 YH8 N17 N5 N 0 1 N N N N N N -24.497 -2.481 25.275 -2.862 0.679 -0.902 N17 YH8 34 YH8 O18 O2 O 0 1 N N N N N N -25.537 -4.913 25.642 -2.319 2.939 0.551 O18 YH8 35 YH8 N21 N6 N 0 1 N N N N N N -21.871 -1.952 26.174 -5.377 0.145 0.025 N21 YH8 36 YH8 F31 F1 F 0 1 N N N N N N -35.969 1.187 27.176 7.342 -4.706 1.513 F31 YH8 37 YH8 F32 F2 F 0 1 N N N N N N -34.734 2.261 28.359 5.349 -5.073 2.568 F32 YH8 38 YH8 F33 F3 F 0 1 N N N N N N -35.561 3.140 26.643 5.863 -6.227 0.665 F33 YH8 39 YH8 N34 N7 N 0 1 N N N N N N -30.680 0.159 23.948 3.587 -0.917 -1.798 N34 YH8 40 YH8 C35 C29 C 0 1 N N N N N N -29.801 -0.799 24.303 2.513 -0.252 -1.326 C35 YH8 41 YH8 O36 O3 O 0 1 N N N N N N -29.714 -1.262 25.431 2.115 -0.463 -0.200 O36 YH8 42 YH8 C37 C30 C 0 1 N N N N N N -28.838 -1.216 23.205 1.808 0.755 -2.198 C37 YH8 43 YH8 C38 C31 C 0 1 N N N N N N -30.107 1.433 26.573 4.716 -3.154 -3.148 C38 YH8 44 YH8 C39 C32 C 0 1 N N N N N N -20.733 -2.321 26.794 -6.595 -0.430 -0.034 C39 YH8 45 YH8 O40 O4 O 0 1 N N N N N N -20.647 -2.424 28.006 -7.457 0.046 -0.747 O40 YH8 46 YH8 N42 N8 N 0 1 Y N N N N N -18.994 -1.568 25.243 -5.989 -2.072 1.650 N42 YH8 47 YH8 O47 O5 O 0 1 N N N N N N -19.358 -4.838 26.812 -9.012 -1.869 -0.299 O47 YH8 48 YH8 H1 H1 H 0 1 N N N N N N -33.251 -6.867 23.520 5.465 5.802 1.615 H1 YH8 49 YH8 H2 H2 H 0 1 N N N N N N -32.694 -7.119 21.831 5.411 6.552 0.005 H2 YH8 50 YH8 H3 H3 H 0 1 N N N N N N -31.395 -5.155 22.571 4.107 4.437 -0.238 H3 YH8 51 YH8 H4 H4 H 0 1 N N N N N N -17.417 -0.963 24.015 -5.458 -3.456 3.096 H4 YH8 52 YH8 H5 H5 H 0 1 N N N N N N -16.217 -3.084 24.088 -7.554 -4.733 2.882 H5 YH8 53 YH8 H6 H6 H 0 1 N N N N N N -17.149 -4.949 25.428 -9.274 -3.994 1.255 H6 YH8 54 YH8 H7 H7 H 0 1 N N N N N N -25.993 1.570 24.817 -1.133 -1.007 -4.408 H7 YH8 55 YH8 H8 H8 H 0 1 N N N N N N -27.471 0.624 25.202 -1.878 0.519 -3.875 H8 YH8 56 YH8 H9 H9 H 0 1 N N N N N N -25.906 0.201 25.976 -0.126 0.443 -4.184 H9 YH8 57 YH8 H10 H10 H 0 1 N N N N N N -24.982 -0.423 23.768 -1.611 -1.052 -1.975 H10 YH8 58 YH8 H11 H11 H 0 1 N N N N N N -26.547 0.000 22.993 0.140 -1.128 -2.284 H11 YH8 59 YH8 H12 H12 H 0 1 N N N N N N -25.117 -1.715 27.140 -4.298 0.797 -2.435 H12 YH8 60 YH8 H13 H13 H 0 1 N N N N N N -24.105 -3.197 27.219 -3.673 2.365 -1.867 H13 YH8 61 YH8 H14 H14 H 0 1 N N N N N N -22.762 -1.332 27.979 -4.894 2.182 0.219 H14 YH8 62 YH8 H15 H15 H 0 1 N N N N N N -23.202 -0.360 26.534 -6.044 1.803 -1.088 H15 YH8 63 YH8 H16 H16 H 0 1 N N N N N N -21.243 -2.493 24.236 -4.569 -1.542 0.987 H16 YH8 64 YH8 H17 H17 H 0 1 N N N N N N -22.297 -1.041 24.322 -3.944 0.025 1.559 H17 YH8 65 YH8 H18 H18 H 0 1 N N N N N N -23.611 -2.852 23.396 -2.195 -0.976 0.211 H18 YH8 66 YH8 H19 H19 H 0 1 N N N N N N -23.106 -3.965 24.712 -3.346 -1.359 -1.096 H19 YH8 67 YH8 H20 H20 H 0 1 N N N N N N -32.423 2.092 27.740 5.765 -4.887 -1.363 H20 YH8 68 YH8 H21 H21 H 0 1 N N N N N N -35.104 0.956 24.633 4.805 -2.733 2.191 H21 YH8 69 YH8 H22 H22 H 0 1 N N N N N N -33.225 0.130 23.280 3.765 -0.957 0.841 H22 YH8 70 YH8 H23 H23 H 0 1 N N N N N N -29.265 -8.231 24.117 1.444 7.069 1.149 H23 YH8 71 YH8 H24 H24 H 0 1 N N N N N N -29.821 -7.498 25.660 1.370 5.895 2.484 H24 YH8 72 YH8 H25 H25 H 0 1 N N N N N N -32.100 -8.108 25.261 2.833 7.959 2.904 H25 YH8 73 YH8 H26 H26 H 0 1 N N N N N N -31.150 -9.553 24.773 3.633 6.387 3.156 H26 YH8 74 YH8 H27 H27 H 0 1 N N N N N N -30.575 0.557 23.037 3.948 -0.698 -2.671 H27 YH8 75 YH8 H28 H28 H 0 1 N N N N N N -28.308 -0.330 22.825 1.438 0.261 -3.097 H28 YH8 76 YH8 H29 H29 H 0 1 N N N N N N -29.398 -1.688 22.385 2.505 1.544 -2.479 H29 YH8 77 YH8 H30 H30 H 0 1 N N N N N N -29.734 2.416 26.251 3.808 -3.673 -3.456 H30 YH8 78 YH8 H31 H31 H 0 1 N N N N N N -30.134 1.394 27.672 4.733 -2.158 -3.592 H31 YH8 79 YH8 H32 H32 H 0 1 N N N N N N -29.439 0.645 26.194 5.588 -3.716 -3.482 H32 YH8 80 YH8 H33 H33 H 0 1 N N N N N N -19.946 -4.488 27.471 -8.910 -2.243 -1.185 H33 YH8 81 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YH8 C1 C2 SING N N 1 YH8 C1 O6 SING N N 2 YH8 C2 C3 DOUB N N 3 YH8 C37 N10 SING N N 4 YH8 C37 C35 SING N N 5 YH8 O6 C5 SING N N 6 YH8 N15 C9 DOUB Y N 7 YH8 N15 C7 SING Y N 8 YH8 N10 C9 SING N N 9 YH8 N10 C11 SING N N 10 YH8 C3 C7 SING N N 11 YH8 C3 C4 SING N N 12 YH8 C16 C11 SING N N 13 YH8 C16 C48 SING N N 14 YH8 N34 C35 SING N N 15 YH8 N34 C29 SING N N 16 YH8 C9 N8 SING Y N 17 YH8 C7 N14 DOUB Y N 18 YH8 C11 C12 DOUB N N 19 YH8 C28 C29 DOUB Y N 20 YH8 C28 C27 SING Y N 21 YH8 C35 O36 DOUB N N 22 YH8 C23 C22 SING N N 23 YH8 C23 N17 SING N N 24 YH8 C5 C4 SING N N 25 YH8 C43 C44 DOUB Y N 26 YH8 C43 N42 SING Y N 27 YH8 N8 N14 SING Y N 28 YH8 N8 C13 SING N N 29 YH8 C44 C45 SING Y N 30 YH8 C22 N21 SING N N 31 YH8 C29 C24 SING Y N 32 YH8 C12 C13 SING N N 33 YH8 C12 N17 SING N N 34 YH8 C27 C26 DOUB Y N 35 YH8 C13 O18 DOUB N N 36 YH8 N42 C41 DOUB Y N 37 YH8 N17 C19 SING N N 38 YH8 C45 C46 DOUB Y N 39 YH8 C41 C46 SING Y N 40 YH8 C41 C39 SING N N 41 YH8 C24 C38 SING N N 42 YH8 C24 C25 DOUB Y N 43 YH8 C46 O47 SING N N 44 YH8 N21 C39 SING N N 45 YH8 N21 C20 SING N N 46 YH8 C26 C25 SING Y N 47 YH8 C26 C30 SING N N 48 YH8 F33 C30 SING N N 49 YH8 C19 C20 SING N N 50 YH8 C39 O40 DOUB N N 51 YH8 C30 F31 SING N N 52 YH8 C30 F32 SING N N 53 YH8 C1 H1 SING N N 54 YH8 C1 H2 SING N N 55 YH8 C2 H3 SING N N 56 YH8 C43 H4 SING N N 57 YH8 C44 H5 SING N N 58 YH8 C45 H6 SING N N 59 YH8 C48 H7 SING N N 60 YH8 C48 H8 SING N N 61 YH8 C48 H9 SING N N 62 YH8 C16 H10 SING N N 63 YH8 C16 H11 SING N N 64 YH8 C19 H12 SING N N 65 YH8 C19 H13 SING N N 66 YH8 C20 H14 SING N N 67 YH8 C20 H15 SING N N 68 YH8 C22 H16 SING N N 69 YH8 C22 H17 SING N N 70 YH8 C23 H18 SING N N 71 YH8 C23 H19 SING N N 72 YH8 C25 H20 SING N N 73 YH8 C27 H21 SING N N 74 YH8 C28 H22 SING N N 75 YH8 C4 H23 SING N N 76 YH8 C4 H24 SING N N 77 YH8 C5 H25 SING N N 78 YH8 C5 H26 SING N N 79 YH8 N34 H27 SING N N 80 YH8 C37 H28 SING N N 81 YH8 C37 H29 SING N N 82 YH8 C38 H30 SING N N 83 YH8 C38 H31 SING N N 84 YH8 C38 H32 SING N N 85 YH8 O47 H33 SING N N 86 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YH8 InChI InChI 1.06 "InChI=1S/C32H33F3N8O5/c1-3-23-27(40-11-13-41(14-12-40)29(46)26-24(44)5-4-10-36-26)30(47)43-31(38-28(39-43)20-8-15-48-16-9-20)42(23)18-25(45)37-22-7-6-21(17-19(22)2)32(33,34)35/h4-8,10,17,44H,3,9,11-16,18H2,1-2H3,(H,37,45)" YH8 InChIKey InChI 1.06 FLRLAYBOOSONEK-UHFFFAOYSA-N YH8 SMILES_CANONICAL CACTVS 3.385 "CCC1=C(N2CCN(CC2)C(=O)c3ncccc3O)C(=O)n4nc(nc4N1CC(=O)Nc5ccc(cc5C)C(F)(F)F)C6=CCOCC6" YH8 SMILES CACTVS 3.385 "CCC1=C(N2CCN(CC2)C(=O)c3ncccc3O)C(=O)n4nc(nc4N1CC(=O)Nc5ccc(cc5C)C(F)(F)F)C6=CCOCC6" YH8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC1=C(C(=O)n2c(nc(n2)C3=CCOCC3)N1CC(=O)Nc4ccc(cc4C)C(F)(F)F)N5CCN(CC5)C(=O)c6c(cccn6)O" YH8 SMILES "OpenEye OEToolkits" 2.0.7 "CCC1=C(C(=O)n2c(nc(n2)C3=CCOCC3)N1CC(=O)Nc4ccc(cc4C)C(F)(F)F)N5CCN(CC5)C(=O)c6c(cccn6)O" # _pdbx_chem_comp_identifier.comp_id YH8 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[2-(3,6-dihydro-2~{H}-pyran-4-yl)-5-ethyl-7-oxidanylidene-6-[4-(3-oxidanylpyridin-2-yl)carbonylpiperazin-1-yl]-[1,2,4]triazolo[1,5-a]pyrimidin-4-yl]-~{N}-[2-methyl-4-(trifluoromethyl)phenyl]ethanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YH8 "Create component" 2023-06-16 PDBE YH8 "Initial release" 2024-04-24 RCSB #