data_YH9 # _chem_comp.id YH9 _chem_comp.name "({[(3aS,4R,7R,9R,10aS)-2,6-diamino-10,10-dihydroxy-9-(sulfooxy)-3a,4,9,10-tetrahydro-1H,8H-pyrrolo[1,2-c]purin-4-yl]methoxy}carbonyl)sulfamic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H17 N7 O11 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-12-04 _chem_comp.pdbx_modified_date 2025-05-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 475.412 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YH9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8V67 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YH9 C01 C1 C 0 1 N N N N N N -48.869 17.160 9.492 1.494 -0.745 -1.378 C01 YH9 1 YH9 C02 C2 C 0 1 N N R N N N -50.167 17.061 10.337 1.480 -1.423 0.020 C02 YH9 2 YH9 C03 C3 C 0 1 N N N N N N -51.285 16.847 9.151 2.637 -0.682 0.748 C03 YH9 3 YH9 C04 C4 C 0 1 N N S N N N -50.446 16.404 7.816 2.607 0.716 0.136 C04 YH9 4 YH9 C06 C5 C 0 1 N N N N N N -48.262 15.135 8.276 1.370 1.802 -1.733 C06 YH9 5 YH9 C08 C6 C 0 1 N N R N N N -49.675 14.089 6.697 0.740 2.359 0.507 C08 YH9 6 YH9 C09 C7 C 0 1 N N S N N N -50.814 15.213 6.857 2.030 1.778 1.077 C09 YH9 7 YH9 C11 C8 C 0 1 N N N N N N -50.618 17.035 5.533 4.104 2.428 0.440 C11 YH9 8 YH9 C14 C9 C 0 1 N N N N N N -50.367 12.767 7.200 -0.379 1.327 0.659 C14 YH9 9 YH9 C16 C10 C 0 1 N N N N N N -52.211 12.871 8.952 -2.730 1.128 0.300 C16 YH9 10 YH9 N05 N1 N 0 1 N N N N N N -49.202 16.253 8.438 1.788 0.659 -1.084 N05 YH9 11 YH9 N07 N2 N 0 1 N N N N N N -48.412 14.199 7.456 0.873 2.712 -0.910 N07 YH9 12 YH9 N10 N3 N 0 1 N N N N N N -50.910 15.764 5.493 3.078 2.806 1.135 N10 YH9 13 YH9 N12 N4 N 0 1 N N N N N N -50.363 17.521 6.827 3.953 1.209 -0.168 N12 YH9 14 YH9 N13 N5 N 0 1 N N N N N N -50.611 17.810 4.385 5.246 3.185 0.322 N13 YH9 15 YH9 N18 N6 N 0 1 N N N N N N -53.569 12.629 9.304 -3.929 1.608 -0.084 N18 YH9 16 YH9 N23 N7 N 0 1 N N N N N N -47.061 15.246 9.075 1.462 1.979 -3.093 N23 YH9 17 YH9 O15 O1 O 0 1 N N N N N N -51.789 12.961 7.578 -1.637 1.911 0.229 O15 YH9 18 YH9 O17 O2 O 0 1 N N N N N N -51.358 13.004 9.838 -2.635 -0.012 0.711 O17 YH9 19 YH9 O20 O3 O 0 1 N N N N N N -54.964 11.671 11.321 -6.367 1.441 -0.433 O20 YH9 20 YH9 O21 O4 O 0 1 N N N N N N -55.398 13.900 10.713 -4.922 -0.591 -0.602 O21 YH9 21 YH9 O22 O5 O 0 1 N N N N N N -53.287 13.312 11.802 -5.520 0.348 1.476 O22 YH9 22 YH9 O24 O6 O 0 1 N N N N N N -51.960 18.013 8.871 3.887 -1.322 0.487 O24 YH9 23 YH9 O25 O7 O 0 1 N N N N N N -52.123 15.773 9.404 2.388 -0.621 2.154 O25 YH9 24 YH9 O26 O8 O 0 1 N N N N N N -50.364 18.073 11.206 1.756 -2.820 -0.087 O26 YH9 25 YH9 O28 O9 O 0 1 N N N N N N -52.208 16.942 12.343 -0.407 -3.120 0.801 O28 YH9 26 YH9 O29 O10 O 0 1 N N N N N N -51.307 18.933 13.364 -0.110 -3.550 -1.497 O29 YH9 27 YH9 O30 O11 O 0 1 N N N N N N -52.514 19.086 11.282 0.966 -5.040 -0.021 O30 YH9 28 YH9 S19 S1 S 0 1 N N N N N N -54.378 12.926 10.936 -5.274 0.645 0.004 S19 YH9 29 YH9 S27 S2 S 0 1 N N N N N N -51.741 18.279 12.176 0.512 -3.697 -0.116 S27 YH9 30 YH9 H1 H1 H 0 1 N N N N N N -47.986 16.826 10.056 2.275 -1.176 -2.005 H1 YH9 31 YH9 H2 H2 H 0 1 N N N N N N -48.701 18.180 9.117 0.521 -0.841 -1.860 H2 YH9 32 YH9 H3 H3 H 0 1 N N N N N N -50.121 16.108 10.885 0.529 -1.253 0.526 H3 YH9 33 YH9 H4 H4 H 0 1 N N N N N N -49.454 13.979 5.625 0.476 3.254 1.070 H4 YH9 34 YH9 H5 H5 H 0 1 N N N N N N -51.758 14.745 7.174 1.848 1.352 2.063 H5 YH9 35 YH9 H6 H6 H 0 1 N N N N N N -50.318 12.018 6.396 -0.155 0.454 0.046 H6 YH9 36 YH9 H7 H7 H 0 1 N N N N N N -49.819 12.397 8.079 -0.457 1.027 1.704 H7 YH9 37 YH9 H8 H8 H 0 1 N N N N N N -50.157 18.473 7.052 4.619 0.752 -0.705 H8 YH9 38 YH9 H9 H9 H 0 1 N N N N N N -50.833 17.397 3.502 5.990 2.861 -0.210 H9 YH9 39 YH9 H10 H10 H 0 1 N N N N N N -50.384 18.782 4.440 5.308 4.043 0.770 H10 YH9 40 YH9 H11 H11 H 0 1 N N N N N N -54.152 12.255 8.583 -4.005 2.518 -0.412 H11 YH9 41 YH9 H12 H12 H 0 1 N N N N N N -46.332 14.569 8.978 1.837 1.278 -3.649 H12 YH9 42 YH9 H13 H13 H 0 1 N N N N N N -46.960 16.000 9.724 1.153 2.805 -3.497 H13 YH9 43 YH9 H14 H14 H 0 1 N N N N N N -52.190 18.449 9.683 3.944 -2.226 0.826 H14 YH9 44 YH9 H15 H15 H 0 1 N N N N N N -51.605 14.983 9.505 2.329 -1.486 2.581 H15 YH9 45 YH9 H16 H16 H 0 1 N N N N N N -53.164 12.650 12.472 -6.290 -0.213 1.640 H16 YH9 46 YH9 H17 H17 H 0 1 N N N N N N -51.616 19.831 13.363 -0.915 -4.071 -1.624 H17 YH9 47 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YH9 N13 C11 SING N N 1 YH9 N10 C11 DOUB N N 2 YH9 N10 C09 SING N N 3 YH9 C11 N12 SING N N 4 YH9 C08 C09 SING N N 5 YH9 C08 C14 SING N N 6 YH9 C08 N07 SING N N 7 YH9 N12 C04 SING N N 8 YH9 C09 C04 SING N N 9 YH9 C14 O15 SING N N 10 YH9 N07 C06 DOUB N N 11 YH9 O15 C16 SING N N 12 YH9 C04 N05 SING N N 13 YH9 C04 C03 SING N N 14 YH9 C06 N05 SING N N 15 YH9 C06 N23 SING N N 16 YH9 N05 C01 SING N N 17 YH9 O24 C03 SING N N 18 YH9 C16 N18 SING N N 19 YH9 C16 O17 DOUB N N 20 YH9 C03 O25 SING N N 21 YH9 C03 C02 SING N N 22 YH9 N18 S19 SING N N 23 YH9 C01 C02 SING N N 24 YH9 C02 O26 SING N N 25 YH9 O21 S19 DOUB N N 26 YH9 S19 O20 DOUB N N 27 YH9 S19 O22 SING N N 28 YH9 O26 S27 SING N N 29 YH9 O30 S27 DOUB N N 30 YH9 S27 O28 DOUB N N 31 YH9 S27 O29 SING N N 32 YH9 C01 H1 SING N N 33 YH9 C01 H2 SING N N 34 YH9 C02 H3 SING N N 35 YH9 C08 H4 SING N N 36 YH9 C09 H5 SING N N 37 YH9 C14 H6 SING N N 38 YH9 C14 H7 SING N N 39 YH9 N12 H8 SING N N 40 YH9 N13 H9 SING N N 41 YH9 N13 H10 SING N N 42 YH9 N18 H11 SING N N 43 YH9 N23 H12 SING N N 44 YH9 N23 H13 SING N N 45 YH9 O24 H14 SING N N 46 YH9 O25 H15 SING N N 47 YH9 O22 H16 SING N N 48 YH9 O29 H17 SING N N 49 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YH9 SMILES ACDLabs 12.01 "O=S(=O)(O)NC(=O)OCC1N=C(N)N2CC(OS(=O)(=O)O)C(O)(O)C32NC(N)=NC13" YH9 InChI InChI 1.06 "InChI=1S/C10H17N7O11S2/c11-6-14-5-3(2-27-8(18)16-29(21,22)23)13-7(12)17-1-4(28-30(24,25)26)10(19,20)9(5,17)15-6/h3-5,19-20H,1-2H2,(H2,12,13)(H,16,18)(H3,11,14,15)(H,21,22,23)(H,24,25,26)/t3-,4+,5-,9-/m0/s1" YH9 InChIKey InChI 1.06 OKSSKVHGKYJNLL-XXKOCQOQSA-N YH9 SMILES_CANONICAL CACTVS 3.385 "NC1=N[C@H]2[C@H](COC(=O)N[S](O)(=O)=O)N=C(N)N3C[C@@H](O[S](O)(=O)=O)C(O)(O)[C@]23N1" YH9 SMILES CACTVS 3.385 "NC1=N[CH]2[CH](COC(=O)N[S](O)(=O)=O)N=C(N)N3C[CH](O[S](O)(=O)=O)C(O)(O)[C]23N1" YH9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1[C@H](C([C@@]23N1C(=N[C@H]([C@@H]2N=C(N3)N)COC(=O)NS(=O)(=O)O)N)(O)O)OS(=O)(=O)O" YH9 SMILES "OpenEye OEToolkits" 2.0.7 "C1C(C(C23N1C(=NC(C2N=C(N3)N)COC(=O)NS(=O)(=O)O)N)(O)O)OS(=O)(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YH9 "SYSTEMATIC NAME" ACDLabs 12.01 "({[(3aS,4R,7R,9R,10aS)-2,6-diamino-10,10-dihydroxy-9-(sulfooxy)-3a,4,9,10-tetrahydro-1H,8H-pyrrolo[1,2-c]purin-4-yl]methoxy}carbonyl)sulfamic acid" YH9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(3~{a}~{S},4~{R},9~{R},10~{a}~{S})-2,6-bis(azanyl)-10,10-bis(oxidanyl)-9-sulfooxy-3~{a},4,8,9-tetrahydro-1~{H}-pyrrolo[1,2-c]purin-4-yl]methoxycarbonylsulfamic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YH9 "Create component" 2023-12-04 RCSB YH9 "Initial release" 2025-05-07 RCSB #