data_YHD # _chem_comp.id YHD _chem_comp.name "N-[(1R)-2-([1,1'-biphenyl]-4-yl)-1-boronoethyl]-1-methyl-L-prolinamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H25 B N2 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-03-08 _chem_comp.pdbx_modified_date 2021-09-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 352.235 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YHD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7LXV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YHD C11 C1 C 0 1 Y N N 208.345 220.875 176.228 1.560 1.222 0.753 C11 YHD 1 YHD C13 C2 C 0 1 Y N N 208.998 223.156 177.119 3.705 0.220 0.356 C13 YHD 2 YHD C14 C3 C 0 1 Y N N 210.089 224.270 177.464 5.128 0.346 -0.046 C14 YHD 3 YHD C16 C4 C 0 1 Y N N 210.960 226.119 178.940 6.971 1.701 -0.774 C16 YHD 4 YHD C17 C5 C 0 1 Y N N 212.073 226.375 178.147 7.782 0.581 -0.797 C17 YHD 5 YHD C18 C6 C 0 1 Y N N 212.201 225.587 177.011 7.271 -0.657 -0.451 C18 YHD 6 YHD C19 C7 C 0 1 Y N N 211.246 224.596 176.702 5.948 -0.780 -0.076 C19 YHD 7 YHD C21 C8 C 0 1 Y N N 206.638 222.212 176.977 1.862 -1.135 1.084 C21 YHD 8 YHD C10 C9 C 0 1 Y N N 206.956 220.955 176.415 1.050 -0.015 1.104 C10 YHD 9 YHD C12 C10 C 0 1 Y N N 209.282 221.887 176.547 2.883 1.345 0.379 C12 YHD 10 YHD C15 C11 C 0 1 Y N N 210.020 225.119 178.605 5.647 1.589 -0.401 C15 YHD 11 YHD C20 C12 C 0 1 Y N N 207.586 223.226 177.303 3.186 -1.023 0.711 C20 YHD 12 YHD B01 B1 B 0 1 N N N 203.437 219.408 175.490 -0.776 -1.763 -0.395 B01 YHD 13 YHD C02 C13 C 0 1 N N R 204.509 219.760 176.621 -1.251 -0.425 0.275 C02 YHD 14 YHD C03 C14 C 0 1 N N N 203.437 219.079 178.782 -3.615 0.067 -0.047 C03 YHD 15 YHD C04 C15 C 0 1 N N S 203.272 218.147 180.014 -5.061 -0.061 0.360 C04 YHD 16 YHD C05 C16 C 0 1 N N N 204.810 219.761 181.061 -4.677 2.331 0.230 C05 YHD 17 YHD C06 C17 C 0 1 N N N 203.742 217.995 182.396 -6.778 1.365 -0.516 C06 YHD 18 YHD C07 C18 C 0 1 N N N 202.274 218.374 182.296 -7.207 -0.103 -0.761 C07 YHD 19 YHD C08 C19 C 0 1 N N N 201.950 218.354 180.796 -5.843 -0.840 -0.718 C08 YHD 20 YHD C09 C20 C 0 1 N N N 205.964 219.817 176.033 -0.396 -0.143 1.512 C09 YHD 21 YHD N22 N1 N 0 1 N N N 204.337 218.879 177.785 -2.656 -0.550 0.671 N22 YHD 22 YHD N23 N2 N 0 1 N N N 204.346 218.346 181.066 -5.673 1.276 0.463 N23 YHD 23 YHD O24 O1 O 0 1 N N N 203.185 218.080 175.394 -1.356 -2.999 -0.004 O24 YHD 24 YHD O25 O2 O 0 1 N N N 202.672 220.097 178.710 -3.316 0.725 -1.021 O25 YHD 25 YHD O26 O3 O 0 1 N N N 202.221 219.965 175.723 0.235 -1.738 -1.393 O26 YHD 26 YHD H1 H1 H 0 1 N N N 208.733 219.961 175.803 0.921 2.092 0.767 H1 YHD 27 YHD H2 H2 H 0 1 N N N 210.810 226.701 179.837 7.374 2.664 -1.049 H2 YHD 28 YHD H3 H3 H 0 1 N N N 212.793 227.139 178.399 8.817 0.672 -1.090 H3 YHD 29 YHD H4 H4 H 0 1 N N N 213.045 225.735 176.354 7.908 -1.528 -0.470 H4 YHD 30 YHD H5 H5 H 0 1 N N N 211.409 224.028 175.798 5.550 -1.747 0.195 H5 YHD 31 YHD H6 H6 H 0 1 N N N 205.597 222.421 177.175 1.458 -2.098 1.359 H6 YHD 32 YHD H7 H7 H 0 1 N N N 210.319 221.672 176.334 3.280 2.311 0.105 H7 YHD 33 YHD H8 H8 H 0 1 N N N 209.179 224.988 179.270 5.014 2.465 -0.384 H8 YHD 34 YHD H9 H9 H 0 1 N N N 207.196 224.137 177.732 3.819 -1.898 0.694 H9 YHD 35 YHD H10 H10 H 0 1 N N N 204.273 220.783 176.949 -1.145 0.395 -0.435 H10 YHD 36 YHD H11 H11 H 0 1 N N N 203.308 217.104 179.665 -5.132 -0.579 1.317 H11 YHD 37 YHD H12 H12 H 0 1 N N N 205.588 219.895 181.827 -4.380 2.324 -0.819 H12 YHD 38 YHD H13 H13 H 0 1 N N N 205.223 220.008 180.072 -5.109 3.300 0.479 H13 YHD 39 YHD H14 H14 H 0 1 N N N 203.962 220.426 181.280 -3.803 2.150 0.856 H14 YHD 40 YHD H15 H15 H 0 1 N N N 203.847 216.918 182.592 -6.427 1.818 -1.443 H15 YHD 41 YHD H16 H16 H 0 1 N N N 204.231 218.564 183.201 -7.607 1.939 -0.103 H16 YHD 42 YHD H17 H17 H 0 1 N N N 202.106 219.378 182.713 -7.866 -0.455 0.033 H17 YHD 43 YHD H18 H18 H 0 1 N N N 201.651 217.645 182.834 -7.681 -0.213 -1.737 H18 YHD 44 YHD H19 H19 H 0 1 N N N 201.490 219.309 180.502 -5.339 -0.775 -1.682 H19 YHD 45 YHD H20 H20 H 0 1 N N N 201.255 217.530 180.577 -5.976 -1.880 -0.421 H20 YHD 46 YHD H21 H21 H 0 1 N N N 205.855 219.856 174.939 -0.502 -0.963 2.222 H21 YHD 47 YHD H22 H22 H 0 1 N N N 206.451 218.873 176.319 -0.725 0.786 1.977 H22 YHD 48 YHD H23 H23 H 0 1 N N N 204.926 218.073 177.847 -2.895 -1.076 1.450 H23 YHD 49 YHD H25 H25 H 0 1 N N N 203.996 217.614 175.229 -2.034 -2.915 0.680 H25 YHD 50 YHD H26 H26 H 0 1 N N N 202.314 220.907 175.804 0.569 -0.852 -1.592 H26 YHD 51 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YHD O24 B01 SING N N 1 YHD B01 O26 SING N N 2 YHD B01 C02 SING N N 3 YHD C09 C10 SING N N 4 YHD C09 C02 SING N N 5 YHD C11 C10 DOUB Y N 6 YHD C11 C12 SING Y N 7 YHD C10 C21 SING Y N 8 YHD C12 C13 DOUB Y N 9 YHD C02 N22 SING N N 10 YHD C19 C18 DOUB Y N 11 YHD C19 C14 SING Y N 12 YHD C21 C20 DOUB Y N 13 YHD C18 C17 SING Y N 14 YHD C13 C20 SING Y N 15 YHD C13 C14 SING N N 16 YHD C14 C15 DOUB Y N 17 YHD N22 C03 SING N N 18 YHD C17 C16 DOUB Y N 19 YHD C15 C16 SING Y N 20 YHD O25 C03 DOUB N N 21 YHD C03 C04 SING N N 22 YHD C04 C08 SING N N 23 YHD C04 N23 SING N N 24 YHD C08 C07 SING N N 25 YHD C05 N23 SING N N 26 YHD N23 C06 SING N N 27 YHD C07 C06 SING N N 28 YHD C11 H1 SING N N 29 YHD C16 H2 SING N N 30 YHD C17 H3 SING N N 31 YHD C18 H4 SING N N 32 YHD C19 H5 SING N N 33 YHD C21 H6 SING N N 34 YHD C12 H7 SING N N 35 YHD C15 H8 SING N N 36 YHD C20 H9 SING N N 37 YHD C02 H10 SING N N 38 YHD C04 H11 SING N N 39 YHD C05 H12 SING N N 40 YHD C05 H13 SING N N 41 YHD C05 H14 SING N N 42 YHD C06 H15 SING N N 43 YHD C06 H16 SING N N 44 YHD C07 H17 SING N N 45 YHD C07 H18 SING N N 46 YHD C08 H19 SING N N 47 YHD C08 H20 SING N N 48 YHD C09 H21 SING N N 49 YHD C09 H22 SING N N 50 YHD N22 H23 SING N N 51 YHD O24 H25 SING N N 52 YHD O26 H26 SING N N 53 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YHD SMILES ACDLabs 12.01 "O=C(NC(Cc1ccc(cc1)c1ccccc1)B(O)O)C1CCCN1C" YHD InChI InChI 1.03 "InChI=1S/C20H25BN2O3/c1-23-13-5-8-18(23)20(24)22-19(21(25)26)14-15-9-11-17(12-10-15)16-6-3-2-4-7-16/h2-4,6-7,9-12,18-19,25-26H,5,8,13-14H2,1H3,(H,22,24)/t18-,19-/m0/s1" YHD InChIKey InChI 1.03 VGGVSZZQWVUBBQ-OALUTQOASA-N YHD SMILES_CANONICAL CACTVS 3.385 "CN1CCC[C@H]1C(=O)N[C@@H](Cc2ccc(cc2)c3ccccc3)B(O)O" YHD SMILES CACTVS 3.385 "CN1CCC[CH]1C(=O)N[CH](Cc2ccc(cc2)c3ccccc3)B(O)O" YHD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "B([C@H](Cc1ccc(cc1)c2ccccc2)NC(=O)[C@@H]3CCCN3C)(O)O" YHD SMILES "OpenEye OEToolkits" 2.0.7 "B(C(Cc1ccc(cc1)c2ccccc2)NC(=O)C3CCCN3C)(O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YHD "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(1R)-2-([1,1'-biphenyl]-4-yl)-1-boronoethyl]-1-methyl-L-prolinamide" YHD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(1~{R})-1-[[(2~{S})-1-methylpyrrolidin-2-yl]carbonylamino]-2-(4-phenylphenyl)ethyl]boronic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YHD "Create component" 2021-03-08 RCSB YHD "Initial release" 2021-09-22 RCSB ##