data_YHG # _chem_comp.id YHG _chem_comp.name "(3~{S})-~{N}-[4-[[5-(1,6-dimethylpyrazolo[3,4-b]pyridin-4-yl)-3-methyl-6,7-dihydro-4~{H}-pyrazolo[4,3-c]pyridin-1-yl]methyl]-1-bicyclo[2.2.2]octanyl]morpholine-3-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H40 N8 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-16 _chem_comp.pdbx_modified_date 2023-08-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 532.680 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YHG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PFI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YHG C1 C1 C 0 1 N N N -40.990 43.001 142.124 7.315 3.904 -1.636 C1 YHG 1 YHG C11 C2 C 0 1 Y N N -40.445 40.548 142.235 6.056 2.238 -0.218 C11 YHG 2 YHG C13 C3 C 0 1 N N N -39.435 37.597 145.217 2.960 -0.799 1.758 C13 YHG 3 YHG C14 C4 C 0 1 N N N -39.604 36.399 146.181 1.535 -1.358 1.640 C14 YHG 4 YHG C15 C5 C 0 1 Y N N -38.750 35.264 145.698 1.477 -2.220 0.403 C15 YHG 5 YHG C16 C6 C 0 1 Y N N -38.522 35.069 144.403 2.420 -2.181 -0.575 C16 YHG 6 YHG C17 C7 C 0 1 N N N -39.046 35.945 143.300 3.622 -1.271 -0.534 C17 YHG 7 YHG C18 C8 C 0 1 Y N N -37.687 33.875 144.332 2.059 -3.100 -1.556 C18 YHG 8 YHG C19 C9 C 0 1 N N N -37.122 33.219 143.116 2.823 -3.388 -2.822 C19 YHG 9 YHG C22 C10 C 0 1 N N N -38.197 34.122 147.837 -0.640 -3.487 0.819 C22 YHG 10 YHG C23 C11 C 0 1 N N N -39.392 33.273 148.390 -1.804 -2.586 0.401 C23 YHG 11 YHG C24 C12 C 0 1 N N N -39.395 31.808 147.824 -2.082 -2.771 -1.092 C24 YHG 12 YHG C25 C13 C 0 1 N N N -40.614 30.975 148.381 -3.246 -1.870 -1.509 C25 YHG 13 YHG C26 C14 C 0 1 N N N -41.448 31.818 149.416 -3.744 -1.085 -0.294 C26 YHG 14 YHG C28 C15 C 0 1 N N N -40.471 32.332 150.539 -4.216 -2.060 0.786 C28 YHG 15 YHG C29 C16 C 0 1 N N N -39.274 33.155 149.948 -3.052 -2.961 1.203 C29 YHG 16 YHG C30 C17 C 0 1 N N N -41.980 33.059 148.627 -2.606 -0.224 0.258 C30 YHG 17 YHG N2 N1 N 0 1 Y N N -40.616 41.769 142.796 6.247 2.933 -1.382 N2 YHG 18 YHG N3 N2 N 0 1 Y N N -40.350 41.675 144.113 5.248 2.557 -2.287 N3 YHG 19 YHG C4 C18 C 0 1 Y N N -40.041 40.487 144.428 4.465 1.675 -1.735 C4 YHG 20 YHG C5 C19 C 0 1 Y N N -40.073 39.611 143.195 4.924 1.429 -0.421 C5 YHG 21 YHG C6 C20 C 0 1 Y N N -39.855 38.248 142.877 4.485 0.592 0.625 C6 YHG 22 YHG C7 C21 C 0 1 Y N N -40.020 37.930 141.513 5.201 0.610 1.816 C7 YHG 23 YHG C8 C22 C 0 1 Y N N -40.375 38.900 140.576 6.305 1.436 1.935 C8 YHG 24 YHG C9 C23 C 0 1 N N N -40.568 38.500 139.117 7.074 1.453 3.231 C9 YHG 25 YHG N10 N3 N 0 1 Y N N -40.578 40.183 140.945 6.695 2.213 0.947 N10 YHG 26 YHG N12 N4 N 0 1 N N N -39.469 37.282 143.780 3.373 -0.223 0.471 N12 YHG 27 YHG N20 N5 N 0 1 Y N N -37.520 33.494 145.529 0.939 -3.672 -1.184 N20 YHG 28 YHG N21 N6 N 0 1 Y N N -38.188 34.304 146.386 0.555 -3.128 0.051 N21 YHG 29 YHG N27 N7 N 0 1 N N N -42.594 31.111 150.012 -4.859 -0.222 -0.694 N27 YHG 30 YHG C31 C24 C 0 1 N N N -40.792 33.917 148.067 -1.442 -1.125 0.675 C31 YHG 31 YHG C32 C25 C 0 1 N N N -42.571 29.933 150.699 -5.460 0.567 0.218 C32 YHG 32 YHG O33 O1 O 0 1 N N N -41.578 29.236 150.904 -5.079 0.564 1.369 O33 YHG 33 YHG C34 C26 C 0 1 N N S -43.886 29.465 151.305 -6.607 1.454 -0.194 C34 YHG 34 YHG C35 C27 C 0 1 N N N -43.902 27.919 151.548 -6.061 2.716 -0.868 C35 YHG 35 YHG O36 O2 O 0 1 N N N -45.121 27.262 151.100 -7.149 3.588 -1.189 O36 YHG 36 YHG C37 C28 C 0 1 N N N -46.371 27.929 151.424 -7.925 3.981 -0.054 C37 YHG 37 YHG C38 C29 C 0 1 N N N -46.387 29.446 151.056 -8.489 2.733 0.629 C38 YHG 38 YHG N39 N8 N 0 1 N N N -45.072 29.899 150.515 -7.382 1.838 0.996 N39 YHG 39 YHG H1 H1 H 0 1 N N N -41.019 43.823 142.854 8.182 3.390 -2.050 H1 YHG 40 YHG H2 H2 H 0 1 N N N -40.251 43.231 141.342 6.963 4.653 -2.345 H2 YHG 41 YHG H3 H3 H 0 1 N N N -41.983 42.882 141.667 7.593 4.391 -0.701 H3 YHG 42 YHG H4 H4 H 0 1 N N N -38.466 38.069 145.435 2.984 -0.026 2.526 H4 YHG 43 YHG H5 H5 H 0 1 N N N -40.245 38.311 145.424 3.643 -1.604 2.030 H5 YHG 44 YHG H6 H6 H 0 1 N N N -39.290 36.692 147.194 1.299 -1.957 2.519 H6 YHG 45 YHG H7 H7 H 0 1 N N N -40.658 36.086 146.200 0.823 -0.537 1.552 H7 YHG 46 YHG H8 H8 H 0 1 N N N -39.911 35.448 142.837 4.508 -1.843 -0.257 H8 YHG 47 YHG H9 H9 H 0 1 N N N -38.253 36.076 142.549 3.770 -0.814 -1.513 H9 YHG 48 YHG H10 H10 H 0 1 N N N -36.529 32.342 143.414 3.541 -4.188 -2.640 H10 YHG 49 YHG H11 H11 H 0 1 N N N -37.943 32.900 142.457 2.128 -3.695 -3.604 H11 YHG 50 YHG H12 H12 H 0 1 N N N -36.478 33.932 142.581 3.353 -2.490 -3.140 H12 YHG 51 YHG H13 H13 H 0 1 N N N -37.261 33.621 148.124 -0.442 -3.355 1.883 H13 YHG 52 YHG H14 H14 H 0 1 N N N -38.239 35.116 148.305 -0.898 -4.528 0.624 H14 YHG 53 YHG H15 H15 H 0 1 N N N -38.459 31.310 148.116 -1.193 -2.504 -1.663 H15 YHG 54 YHG H16 H16 H 0 1 N N N -39.462 31.849 146.727 -2.340 -3.812 -1.287 H16 YHG 55 YHG H17 H17 H 0 1 N N N -41.266 30.687 147.543 -2.910 -1.175 -2.278 H17 YHG 56 YHG H18 H18 H 0 1 N N N -40.234 30.070 148.877 -4.057 -2.484 -1.903 H18 YHG 57 YHG H19 H19 H 0 1 N N N -41.034 32.973 151.233 -4.571 -1.501 1.651 H19 YHG 58 YHG H20 H20 H 0 1 N N N -40.070 31.465 151.085 -5.027 -2.674 0.392 H20 YHG 59 YHG H21 H21 H 0 1 N N N -38.330 32.650 150.200 -3.310 -4.002 1.008 H21 YHG 60 YHG H22 H22 H 0 1 N N N -39.279 34.164 150.387 -2.854 -2.829 2.267 H22 YHG 61 YHG H23 H23 H 0 1 N N N -42.587 33.681 149.301 -2.270 0.471 -0.511 H23 YHG 62 YHG H24 H24 H 0 1 N N N -42.601 32.713 147.788 -2.961 0.336 1.123 H24 YHG 63 YHG H25 H25 H 0 1 N N N -39.793 40.151 145.424 3.610 1.210 -2.203 H25 YHG 64 YHG H26 H26 H 0 1 N N N -39.868 36.912 141.187 4.897 -0.016 2.643 H26 YHG 65 YHG H27 H27 H 0 1 N N N -40.868 39.381 138.531 6.651 2.209 3.894 H27 YHG 66 YHG H28 H28 H 0 1 N N N -39.624 38.099 138.719 7.007 0.475 3.707 H28 YHG 67 YHG H29 H29 H 0 1 N N N -41.351 37.731 139.048 8.119 1.689 3.030 H29 YHG 68 YHG H30 H30 H 0 1 N N N -43.489 31.543 149.901 -5.164 -0.220 -1.615 H30 YHG 69 YHG H31 H31 H 0 1 N N N -40.834 34.919 148.519 -1.244 -0.993 1.739 H31 YHG 70 YHG H32 H32 H 0 1 N N N -40.900 34.002 146.976 -0.553 -0.858 0.104 H32 YHG 71 YHG H33 H33 H 0 1 N N N -43.965 29.935 152.296 -7.251 0.918 -0.891 H33 YHG 72 YHG H34 H34 H 0 1 N N N -43.788 27.737 152.627 -5.375 3.223 -0.190 H34 YHG 73 YHG H35 H35 H 0 1 N N N -43.052 27.475 151.009 -5.533 2.440 -1.781 H35 YHG 74 YHG H36 H36 H 0 1 N N N -46.546 27.832 152.506 -7.293 4.526 0.648 H36 YHG 75 YHG H37 H37 H 0 1 N N N -47.183 27.430 150.875 -8.745 4.622 -0.378 H37 YHG 76 YHG H38 H38 H 0 1 N N N -46.620 30.029 151.959 -9.034 3.024 1.527 H38 YHG 77 YHG H39 H39 H 0 1 N N N -47.163 29.620 150.296 -9.164 2.218 -0.054 H39 YHG 78 YHG H40 H40 H 0 1 N N N -44.977 29.538 149.587 -6.789 2.262 1.692 H40 YHG 79 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YHG C9 C8 SING N N 1 YHG C8 N10 DOUB Y N 2 YHG C8 C7 SING Y N 3 YHG N10 C11 SING Y N 4 YHG C7 C6 DOUB Y N 5 YHG C1 N2 SING N N 6 YHG C11 N2 SING Y N 7 YHG C11 C5 DOUB Y N 8 YHG N2 N3 SING Y N 9 YHG C6 C5 SING Y N 10 YHG C6 N12 SING N N 11 YHG C19 C18 SING N N 12 YHG C5 C4 SING Y N 13 YHG C17 N12 SING N N 14 YHG C17 C16 SING N N 15 YHG N12 C13 SING N N 16 YHG N3 C4 DOUB Y N 17 YHG C18 C16 SING Y N 18 YHG C18 N20 DOUB Y N 19 YHG C16 C15 DOUB Y N 20 YHG C13 C14 SING N N 21 YHG N20 N21 SING Y N 22 YHG C15 C14 SING N N 23 YHG C15 N21 SING Y N 24 YHG N21 C22 SING N N 25 YHG C24 C25 SING N N 26 YHG C24 C23 SING N N 27 YHG C22 C23 SING N N 28 YHG C31 C23 SING N N 29 YHG C31 C30 SING N N 30 YHG C25 C26 SING N N 31 YHG C23 C29 SING N N 32 YHG C30 C26 SING N N 33 YHG C26 N27 SING N N 34 YHG C26 C28 SING N N 35 YHG C29 C28 SING N N 36 YHG N27 C32 SING N N 37 YHG N39 C38 SING N N 38 YHG N39 C34 SING N N 39 YHG C32 O33 DOUB N N 40 YHG C32 C34 SING N N 41 YHG C38 C37 SING N N 42 YHG O36 C37 SING N N 43 YHG O36 C35 SING N N 44 YHG C34 C35 SING N N 45 YHG C1 H1 SING N N 46 YHG C1 H2 SING N N 47 YHG C1 H3 SING N N 48 YHG C13 H4 SING N N 49 YHG C13 H5 SING N N 50 YHG C14 H6 SING N N 51 YHG C14 H7 SING N N 52 YHG C17 H8 SING N N 53 YHG C17 H9 SING N N 54 YHG C19 H10 SING N N 55 YHG C19 H11 SING N N 56 YHG C19 H12 SING N N 57 YHG C22 H13 SING N N 58 YHG C22 H14 SING N N 59 YHG C24 H15 SING N N 60 YHG C24 H16 SING N N 61 YHG C25 H17 SING N N 62 YHG C25 H18 SING N N 63 YHG C28 H19 SING N N 64 YHG C28 H20 SING N N 65 YHG C29 H21 SING N N 66 YHG C29 H22 SING N N 67 YHG C30 H23 SING N N 68 YHG C30 H24 SING N N 69 YHG C4 H25 SING N N 70 YHG C7 H26 SING N N 71 YHG C9 H27 SING N N 72 YHG C9 H28 SING N N 73 YHG C9 H29 SING N N 74 YHG N27 H30 SING N N 75 YHG C31 H31 SING N N 76 YHG C31 H32 SING N N 77 YHG C34 H33 SING N N 78 YHG C35 H34 SING N N 79 YHG C35 H35 SING N N 80 YHG C37 H36 SING N N 81 YHG C37 H37 SING N N 82 YHG C38 H38 SING N N 83 YHG C38 H39 SING N N 84 YHG N39 H40 SING N N 85 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YHG InChI InChI 1.06 "InChI=1S/C29H40N8O2/c1-19-14-25(21-15-31-35(3)26(21)32-19)36-12-4-24-22(16-36)20(2)34-37(24)18-28-5-8-29(9-6-28,10-7-28)33-27(38)23-17-39-13-11-30-23/h14-15,23,30H,4-13,16-18H2,1-3H3,(H,33,38)/t23-,28-,29+/m0/s1" YHG InChIKey InChI 1.06 OXDQXRVWDYGAHX-WTWMYVDVSA-N YHG SMILES_CANONICAL CACTVS 3.385 "Cn1ncc2c(cc(C)nc12)N3CCc4n(CC56CCC(CC5)(CC6)NC(=O)[C@@H]7COCCN7)nc(C)c4C3" YHG SMILES CACTVS 3.385 "Cn1ncc2c(cc(C)nc12)N3CCc4n(CC56CCC(CC5)(CC6)NC(=O)[CH]7COCCN7)nc(C)c4C3" YHG SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(c2cnn(c2n1)C)N3CCc4c(c(nn4CC56CCC(CC5)(CC6)NC(=O)[C@@H]7COCCN7)C)C3" YHG SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cc(c2cnn(c2n1)C)N3CCc4c(c(nn4CC56CCC(CC5)(CC6)NC(=O)C7COCCN7)C)C3" # _pdbx_chem_comp_identifier.comp_id YHG _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(3~{S})-~{N}-[4-[[5-(1,6-dimethylpyrazolo[3,4-b]pyridin-4-yl)-3-methyl-6,7-dihydro-4~{H}-pyrazolo[4,3-c]pyridin-1-yl]methyl]-1-bicyclo[2.2.2]octanyl]morpholine-3-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YHG "Create component" 2023-06-16 PDBE YHG "Initial release" 2023-08-16 RCSB #