data_YI2
#
_chem_comp.id YI2
_chem_comp.name "(1R,2E,3R,5Z,7E)-17-{(1S)-1-[(2-ethyl-2-hydroxybutyl)sulfanyl]ethyl}-2-(2-hydroxyethylidene)-9,10-secoestra-5,7,16-triene-1,3-diol"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C28 H44 O4 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2012-06-21
_chem_comp.pdbx_modified_date 2013-05-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 476.712
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code YI2
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3VT5
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YI2 C12 C12 C 0 1 N N N 13.044 9.925 27.619 -1.249 3.010 -0.233 C12 YI2 1
YI2 C13 C13 C 0 1 N N S 13.117 8.798 26.533 -1.140 1.516 -0.154 C13 YI2 2
YI2 C14 C14 C 0 1 N N S 14.460 8.977 25.763 -0.102 1.155 0.946 C14 YI2 3
YI2 C15 C15 C 0 1 N N N 14.573 7.670 24.982 -0.357 -0.353 1.000 C15 YI2 4
YI2 C16 C16 C 0 1 N N N 14.255 6.731 26.164 -1.863 -0.441 0.771 C16 YI2 5
YI2 C21 C21 C 0 1 N N N 13.364 5.338 28.618 -4.254 2.081 0.637 C21 YI2 6
YI2 C23 C23 C 0 1 N N N 10.493 5.641 27.170 -6.371 -0.063 -0.561 C23 YI2 7
YI2 C24 C24 C 0 1 N N N 9.435 4.584 27.543 -7.352 -1.223 -0.383 C24 YI2 8
YI2 C29 C29 C 0 1 N N N 7.416 6.300 27.941 -7.873 -0.518 1.956 C29 YI2 9
YI2 C27 C27 C 0 1 N N N 8.316 5.163 28.476 -7.361 -1.664 1.082 C27 YI2 10
YI2 C26 C26 C 0 1 N N N 8.897 3.911 26.253 -8.757 -0.769 -0.788 C26 YI2 11
YI2 C28 C28 C 0 1 N N N 7.972 2.691 26.434 -9.759 -1.888 -0.493 C28 YI2 12
YI2 O03 O03 O 0 1 N N N 10.172 3.611 28.302 -6.950 -2.319 -1.208 O03 YI2 13
YI2 S22 S22 S 0 1 N N N 11.008 6.872 28.448 -4.740 -0.550 0.067 S22 YI2 14
YI2 C20 C20 C 0 1 N N S 12.861 6.782 28.411 -3.732 0.930 -0.226 C20 YI2 15
YI2 C17 C17 C 0 1 N N N 13.425 7.371 27.051 -2.298 0.641 0.137 C17 YI2 16
YI2 C18 C18 C 0 1 N N N 11.759 8.738 25.726 -0.534 1.036 -1.474 C18 YI2 17
YI2 C11 C11 C 0 1 N N N 13.085 11.368 26.988 0.087 3.542 -0.782 C11 YI2 18
YI2 C09 C09 C 0 1 N N N 14.224 11.559 25.965 1.273 3.110 0.077 C09 YI2 19
YI2 C08 C08 C 0 1 N N N 14.370 10.351 24.988 1.208 1.636 0.393 C08 YI2 20
YI2 C07 C07 C 0 1 N N N 14.390 10.468 23.586 2.239 0.827 0.175 C07 YI2 21
YI2 C06 C06 C 0 1 N N N 14.293 11.613 22.784 3.536 1.384 -0.240 C06 YI2 22
YI2 C05 C05 C 0 1 N N N 14.090 11.701 21.406 4.537 0.571 -0.560 C05 YI2 23
YI2 C10 C10 C 0 1 N N N 13.940 10.435 20.497 5.913 1.122 -0.853 C10 YI2 24
YI2 C01 C01 C 0 1 N N R 14.680 10.599 19.133 6.925 0.431 0.071 C01 YI2 25
YI2 O01 O01 O 0 1 N N N 14.249 9.539 18.284 6.731 0.878 1.414 O01 YI2 26
YI2 C04 C04 C 0 1 N N N 14.003 13.099 20.737 4.320 -0.924 -0.632 C04 YI2 27
YI2 C03 C03 C 0 1 N N R 14.776 13.227 19.404 5.335 -1.610 0.292 C03 YI2 28
YI2 O02 O02 O 0 1 N N N 16.171 13.236 19.737 5.322 -3.020 0.055 O02 YI2 29
YI2 C02 C02 C 0 1 N N N 14.392 12.024 18.515 6.706 -1.063 -0.007 C02 YI2 30
YI2 C30 C30 C 0 1 N N N 13.811 12.266 17.249 7.693 -1.865 -0.323 C30 YI2 31
YI2 C31 C31 C 0 1 N N N 13.348 11.440 16.219 9.093 -1.323 -0.452 C31 YI2 32
YI2 O04 O04 O 0 1 N N N 12.791 12.259 15.183 10.002 -2.181 0.241 O04 YI2 33
YI2 H1 H1 H 0 1 N N N 12.106 9.812 28.183 -2.062 3.287 -0.904 H1 YI2 34
YI2 H2 H2 H 0 1 N N N 13.899 9.813 28.302 -1.432 3.421 0.760 H2 YI2 35
YI2 H3 H3 H 0 1 N N N 15.282 9.038 26.491 -0.333 1.634 1.898 H3 YI2 36
YI2 H4 H4 H 0 1 N N N 13.832 7.596 24.172 0.186 -0.866 0.206 H4 YI2 37
YI2 H5 H5 H 0 1 N N N 15.581 7.508 24.573 -0.089 -0.757 1.976 H5 YI2 38
YI2 H6 H6 H 0 1 N N N 14.628 5.724 26.277 -2.487 -1.267 1.080 H6 YI2 39
YI2 H8 H8 H 0 1 N N N 12.966 4.942 29.564 -4.194 1.803 1.689 H8 YI2 40
YI2 H9 H9 H 0 1 N N N 13.022 4.708 27.784 -3.648 2.970 0.461 H9 YI2 41
YI2 H10 H10 H 0 1 N N N 14.463 5.334 28.653 -5.291 2.290 0.374 H10 YI2 42
YI2 H11 H11 H 0 1 N N N 11.398 5.098 26.861 -6.293 0.188 -1.619 H11 YI2 43
YI2 H12 H12 H 0 1 N N N 10.096 6.209 26.315 -6.729 0.804 -0.007 H12 YI2 44
YI2 H13 H13 H 0 1 N N N 6.689 6.588 28.715 -7.948 -0.856 2.990 H13 YI2 45
YI2 H14 H14 H 0 1 N N N 8.039 7.169 27.681 -7.181 0.321 1.897 H14 YI2 46
YI2 H15 H15 H 0 1 N N N 6.880 5.952 27.046 -8.856 -0.204 1.605 H15 YI2 47
YI2 H16 H16 H 0 1 N N N 7.654 4.326 28.745 -8.014 -2.529 1.197 H16 YI2 48
YI2 H17 H17 H 0 1 N N N 8.814 5.543 29.381 -6.349 -1.930 1.387 H17 YI2 49
YI2 H18 H18 H 0 1 N N N 9.765 3.584 25.662 -9.028 0.121 -0.220 H18 YI2 50
YI2 H19 H19 H 0 1 N N N 8.336 4.672 25.691 -8.772 -0.539 -1.853 H19 YI2 51
YI2 H20 H20 H 0 1 N N N 7.665 2.313 25.448 -9.487 -2.778 -1.060 H20 YI2 52
YI2 H21 H21 H 0 1 N N N 8.510 1.901 26.978 -9.744 -2.117 0.572 H21 YI2 53
YI2 H22 H22 H 0 1 N N N 7.081 2.988 27.006 -10.759 -1.564 -0.781 H22 YI2 54
YI2 H23 H23 H 0 1 N N N 10.506 4.014 29.095 -6.922 -2.110 -2.152 H23 YI2 55
YI2 H24 H24 H 0 1 N N N 13.211 7.412 29.242 -3.792 1.208 -1.278 H24 YI2 56
YI2 H26 H26 H 0 1 N N N 10.921 8.609 26.427 -1.214 1.269 -2.293 H26 YI2 57
YI2 H27 H27 H 0 1 N N N 11.626 9.673 25.163 0.420 1.538 -1.639 H27 YI2 58
YI2 H28 H28 H 0 1 N N N 11.785 7.889 25.027 -0.374 -0.042 -1.430 H28 YI2 59
YI2 H29 H29 H 0 1 N N N 13.219 12.099 27.799 0.229 3.167 -1.796 H29 YI2 60
YI2 H30 H30 H 0 1 N N N 12.127 11.554 26.481 0.050 4.631 -0.810 H30 YI2 61
YI2 H31 H31 H 0 1 N N N 15.170 11.685 26.512 2.199 3.328 -0.455 H31 YI2 62
YI2 H32 H32 H 0 1 N N N 14.018 12.465 25.375 1.259 3.667 1.014 H32 YI2 63
YI2 H33 H33 H 0 1 N N N 14.496 9.537 23.048 2.126 -0.239 0.303 H33 YI2 64
YI2 H34 H34 H 0 1 N N N 14.388 12.555 23.303 3.675 2.454 -0.284 H34 YI2 65
YI2 H35 H35 H 0 1 N N N 12.871 10.263 20.302 6.173 0.924 -1.893 H35 YI2 66
YI2 H36 H36 H 0 1 N N N 14.360 9.567 21.026 5.923 2.197 -0.671 H36 YI2 67
YI2 H37 H37 H 0 1 N N N 15.762 10.520 19.316 7.938 0.670 -0.252 H37 YI2 68
YI2 H38 H38 H 0 1 N N N 14.442 8.705 18.695 6.844 1.832 1.532 H38 YI2 69
YI2 H39 H39 H 0 1 N N N 14.408 13.841 21.441 3.308 -1.163 -0.305 H39 YI2 70
YI2 H40 H40 H 0 1 N N N 12.943 13.320 20.541 4.464 -1.266 -1.656 H40 YI2 71
YI2 H41 H41 H 0 1 N N N 14.485 14.161 18.901 5.076 -1.412 1.332 H41 YI2 72
YI2 H42 H42 H 0 1 N N N 16.362 13.990 20.283 4.465 -3.438 0.214 H42 YI2 73
YI2 H43 H43 H 0 1 N N N 13.700 13.318 17.029 7.503 -2.914 -0.491 H43 YI2 74
YI2 H44 H44 H 0 1 N N N 12.575 10.761 16.609 9.369 -1.276 -1.505 H44 YI2 75
YI2 H45 H45 H 0 1 N N N 14.184 10.850 15.814 9.137 -0.323 -0.020 H45 YI2 76
YI2 H46 H46 H 0 1 N N N 12.474 11.707 14.478 10.924 -1.892 0.200 H46 YI2 77
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YI2 O04 C31 SING N N 1
YI2 C31 C30 SING N N 2
YI2 C30 C02 DOUB N E 3
YI2 O01 C01 SING N N 4
YI2 C02 C01 SING N N 5
YI2 C02 C03 SING N N 6
YI2 C01 C10 SING N N 7
YI2 C03 O02 SING N N 8
YI2 C03 C04 SING N N 9
YI2 C10 C05 SING N N 10
YI2 C04 C05 SING N N 11
YI2 C05 C06 DOUB N Z 12
YI2 C06 C07 SING N N 13
YI2 C07 C08 DOUB N E 14
YI2 C15 C14 SING N N 15
YI2 C15 C16 SING N N 16
YI2 C08 C14 SING N N 17
YI2 C08 C09 SING N N 18
YI2 C18 C13 SING N N 19
YI2 C14 C13 SING N N 20
YI2 C09 C11 SING N N 21
YI2 C16 C17 DOUB N N 22
YI2 C26 C28 SING N N 23
YI2 C26 C24 SING N N 24
YI2 C13 C17 SING N N 25
YI2 C13 C12 SING N N 26
YI2 C11 C12 SING N N 27
YI2 C17 C20 SING N N 28
YI2 C23 C24 SING N N 29
YI2 C23 S22 SING N N 30
YI2 C24 O03 SING N N 31
YI2 C24 C27 SING N N 32
YI2 C29 C27 SING N N 33
YI2 C20 S22 SING N N 34
YI2 C20 C21 SING N N 35
YI2 C12 H1 SING N N 36
YI2 C12 H2 SING N N 37
YI2 C14 H3 SING N N 38
YI2 C15 H4 SING N N 39
YI2 C15 H5 SING N N 40
YI2 C16 H6 SING N N 41
YI2 C21 H8 SING N N 42
YI2 C21 H9 SING N N 43
YI2 C21 H10 SING N N 44
YI2 C23 H11 SING N N 45
YI2 C23 H12 SING N N 46
YI2 C29 H13 SING N N 47
YI2 C29 H14 SING N N 48
YI2 C29 H15 SING N N 49
YI2 C27 H16 SING N N 50
YI2 C27 H17 SING N N 51
YI2 C26 H18 SING N N 52
YI2 C26 H19 SING N N 53
YI2 C28 H20 SING N N 54
YI2 C28 H21 SING N N 55
YI2 C28 H22 SING N N 56
YI2 O03 H23 SING N N 57
YI2 C20 H24 SING N N 58
YI2 C18 H26 SING N N 59
YI2 C18 H27 SING N N 60
YI2 C18 H28 SING N N 61
YI2 C11 H29 SING N N 62
YI2 C11 H30 SING N N 63
YI2 C09 H31 SING N N 64
YI2 C09 H32 SING N N 65
YI2 C07 H33 SING N N 66
YI2 C06 H34 SING N N 67
YI2 C10 H35 SING N N 68
YI2 C10 H36 SING N N 69
YI2 C01 H37 SING N N 70
YI2 O01 H38 SING N N 71
YI2 C04 H39 SING N N 72
YI2 C04 H40 SING N N 73
YI2 C03 H41 SING N N 74
YI2 O02 H42 SING N N 75
YI2 C30 H43 SING N N 76
YI2 C31 H44 SING N N 77
YI2 C31 H45 SING N N 78
YI2 O04 H46 SING N N 79
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YI2 SMILES ACDLabs 12.01 "OC3C(=C\CO)\C(O)C/C(=C\C=C1/CCCC2(C(=CCC12)C(SCC(O)(CC)CC)C)C)C3"
YI2 InChI InChI 1.03
"InChI=1S/C28H44O4S/c1-5-28(32,6-2)18-33-19(3)23-11-12-24-21(8-7-14-27(23,24)4)10-9-20-16-25(30)22(13-15-29)26(31)17-20/h9-11,13,19,24-26,29-32H,5-8,12,14-18H2,1-4H3/b20-9-,21-10+,22-13-/t19-,24-,25+,26+,27+/m0/s1"
YI2 InChIKey InChI 1.03 PIRFBNFXEQEXIT-NSHLMRFWSA-N
YI2 SMILES_CANONICAL CACTVS 3.370 "CCC(O)(CC)CS[C@@H](C)C1=CC[C@H]2/C(CCC[C@]12C)=C/C=C3C[C@@H](O)C(=CCO)[C@H](O)C3"
YI2 SMILES CACTVS 3.370 "CCC(O)(CC)CS[CH](C)C1=CC[CH]2C(CCC[C]12C)=CC=C3C[CH](O)C(=CCO)[CH](O)C3"
YI2 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCC(CC)(CS[C@@H](C)C1=CC[C@@H]\2[C@@]1(CCC/C2=C\C=C3C[C@H](C(=CCO)[C@@H](C3)O)O)C)O"
YI2 SMILES "OpenEye OEToolkits" 1.7.6 "CCC(CC)(CSC(C)C1=CCC2C1(CCCC2=CC=C3CC(C(=CCO)C(C3)O)O)C)O"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
YI2 "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,2E,3R,5Z,7E)-17-{(1S)-1-[(2-ethyl-2-hydroxybutyl)sulfanyl]ethyl}-2-(2-hydroxyethylidene)-9,10-secoestra-5,7,16-triene-1,3-diol"
YI2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(1R,3R)-5-[(2E)-2-[(3aS,7aS)-1-[(1S)-1-(2-ethyl-2-oxidanyl-butyl)sulfanylethyl]-7a-methyl-3a,5,6,7-tetrahydro-3H-inden-4-ylidene]ethylidene]-2-(2-oxidanylethylidene)cyclohexane-1,3-diol"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YI2 "Create component" 2012-06-21 PDBJ
YI2 "Initial release" 2013-05-22 RCSB
#