data_YI4 # _chem_comp.id YI4 _chem_comp.name "(1R,2Z,3R,5E,7E,9beta,17beta)-2-(2-hydroxyethylidene)-17-[(2R)-6-hydroxy-6-methylheptan-2-yl]-9-(prop-2-en-1-yl)-9,10-secoestra-5,7-diene-1,3-diol" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C31 H50 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-06-06 _chem_comp.pdbx_modified_date 2013-05-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 486.726 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YI4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3VT9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YI4 O03 O03 O 0 1 N N N 9.540 -0.953 28.451 7.529 -3.488 0.844 O03 YI4 1 YI4 C25 C25 C 0 1 N N N 8.813 -0.029 27.636 8.189 -2.343 0.301 C25 YI4 2 YI4 C26 C26 C 0 1 N N N 7.913 0.805 28.562 8.612 -1.411 1.438 C26 YI4 3 YI4 C27 C27 C 0 1 N N N 7.964 -0.821 26.636 9.427 -2.790 -0.480 C27 YI4 4 YI4 C24 C24 C 0 1 N N N 9.865 0.832 26.919 7.234 -1.602 -0.637 C24 YI4 5 YI4 C23 C23 C 0 1 N N N 10.922 1.585 27.767 6.057 -1.047 0.168 C23 YI4 6 YI4 C22 C22 C 0 1 N N N 12.279 1.668 27.061 5.102 -0.306 -0.771 C22 YI4 7 YI4 C20 C20 C 0 1 N N R 13.272 2.596 27.788 3.925 0.249 0.034 C20 YI4 8 YI4 C21 C21 C 0 1 N N N 14.124 1.695 28.698 4.432 1.308 1.015 C21 YI4 9 YI4 C17 C17 C 0 1 N N R 14.144 3.489 26.817 2.909 0.881 -0.919 C17 YI4 10 YI4 C16 C16 C 0 1 N N N 14.598 2.759 25.521 2.329 -0.192 -1.877 C16 YI4 11 YI4 C15 C15 C 0 1 N N N 15.079 3.856 24.553 0.787 -0.167 -1.679 C15 YI4 12 YI4 C14 C14 C 0 1 N N R 14.926 5.108 25.433 0.537 1.247 -1.149 C14 YI4 13 YI4 C13 C13 C 0 1 N N R 13.655 4.876 26.268 1.712 1.408 -0.141 C13 YI4 14 YI4 C18 C18 C 0 1 N N N 12.269 4.828 25.488 1.463 0.507 1.070 C18 YI4 15 YI4 C12 C12 C 0 1 N N N 13.504 5.971 27.352 1.728 2.848 0.316 C12 YI4 16 YI4 C11 C11 C 0 1 N N N 13.736 7.466 26.966 0.465 3.079 1.163 C11 YI4 17 YI4 C09 C09 C 0 1 N N S 14.633 7.778 25.704 -0.809 2.795 0.369 C09 YI4 18 YI4 C28 C28 C 0 1 N N N 15.975 8.404 26.187 -1.015 3.903 -0.666 C28 YI4 19 YI4 C29 C29 C 0 1 N N N 16.925 7.548 26.776 -1.265 5.210 0.040 C29 YI4 20 YI4 C30 C30 C 0 1 N N N 17.905 8.061 27.615 -0.515 6.252 -0.224 C30 YI4 21 YI4 C08 C08 C 0 1 N N N 14.778 6.530 24.715 -0.712 1.455 -0.346 C08 YI4 22 YI4 C07 C07 C 0 1 N N N 14.757 6.659 23.315 -1.667 0.534 -0.264 C07 YI4 23 YI4 C06 C06 C 0 1 N N N 14.626 7.775 22.475 -2.872 0.794 0.540 C06 YI4 24 YI4 C05 C05 C 0 1 N N N 14.310 7.907 21.118 -3.764 -0.172 0.730 C05 YI4 25 YI4 C10 C10 C 0 1 N N N 14.014 6.708 20.171 -5.085 0.123 1.403 C10 YI4 26 YI4 C01 C01 C 0 1 N N R 14.646 6.858 18.766 -6.219 -0.335 0.477 C01 YI4 27 YI4 O01 O01 O 0 1 N N N 14.071 5.892 17.887 -6.291 0.532 -0.658 O01 YI4 28 YI4 C04 C04 C 0 1 N N N 14.250 9.336 20.532 -3.479 -1.584 0.271 C04 YI4 29 YI4 C03 C03 C 0 1 N N R 14.934 9.451 19.155 -4.617 -2.037 -0.653 C03 YI4 30 YI4 O02 O02 O 0 1 N N N 16.346 9.395 19.402 -4.505 -3.441 -0.898 O02 YI4 31 YI4 C02 C02 C 0 1 N N N 14.436 8.317 18.216 -5.932 -1.748 0.023 C02 YI4 32 YI4 C32 C32 C 0 1 N N N 13.831 8.467 16.950 -6.812 -2.700 0.210 C32 YI4 33 YI4 C33 C33 C 0 1 N N N 13.506 9.593 16.181 -8.184 -2.365 0.735 C33 YI4 34 YI4 O04 O04 O 0 1 N N N 12.621 9.233 15.126 -9.167 -3.089 -0.009 O04 YI4 35 YI4 H1 H1 H 0 1 N N N 10.071 -0.474 29.076 8.077 -4.007 1.449 H1 YI4 36 YI4 H2 H2 H 0 1 N N N 8.537 1.367 29.273 9.292 -1.939 2.106 H2 YI4 37 YI4 H3 H3 H 0 1 N N N 7.320 1.509 27.960 9.115 -0.538 1.024 H3 YI4 38 YI4 H4 H4 H 0 1 N N N 7.238 0.137 29.116 7.731 -1.093 1.994 H4 YI4 39 YI4 H5 H5 H 0 1 N N N 7.223 -1.425 27.181 9.125 -3.454 -1.290 H5 YI4 40 YI4 H6 H6 H 0 1 N N N 7.445 -0.123 25.963 9.930 -1.916 -0.894 H6 YI4 41 YI4 H7 H7 H 0 1 N N N 8.615 -1.483 26.046 10.107 -3.318 0.188 H7 YI4 42 YI4 H8 H8 H 0 1 N N N 10.414 0.168 26.235 7.764 -0.780 -1.120 H8 YI4 43 YI4 H9 H9 H 0 1 N N N 9.320 1.589 26.336 6.863 -2.290 -1.396 H9 YI4 44 YI4 H10 H10 H 0 1 N N N 10.560 2.606 27.959 5.527 -1.869 0.650 H10 YI4 45 YI4 H11 H11 H 0 1 N N N 11.052 1.056 28.723 6.428 -0.359 0.927 H11 YI4 46 YI4 H12 H12 H 0 1 N N N 12.712 0.658 27.012 5.632 0.516 -1.253 H12 YI4 47 YI4 H13 H13 H 0 1 N N N 12.122 2.050 26.041 4.731 -0.994 -1.530 H13 YI4 48 YI4 H14 H14 H 0 1 N N N 12.692 3.276 28.430 3.449 -0.561 0.587 H14 YI4 49 YI4 H15 H15 H 0 1 N N N 13.465 1.101 29.348 4.907 2.117 0.462 H15 YI4 50 YI4 H16 H16 H 0 1 N N N 14.734 1.020 28.079 3.593 1.702 1.589 H16 YI4 51 YI4 H17 H17 H 0 1 N N N 14.784 2.320 29.318 5.155 0.857 1.694 H17 YI4 52 YI4 H18 H18 H 0 1 N N N 15.068 3.704 27.373 3.374 1.686 -1.488 H18 YI4 53 YI4 H19 H19 H 0 1 N N N 13.756 2.205 25.081 2.577 0.055 -2.909 H19 YI4 54 YI4 H20 H20 H 0 1 N N N 15.419 2.061 25.744 2.724 -1.175 -1.622 H20 YI4 55 YI4 H21 H21 H 0 1 N N N 14.444 3.912 23.657 0.272 -0.320 -2.628 H21 YI4 56 YI4 H22 H22 H 0 1 N N N 16.125 3.699 24.252 0.480 -0.913 -0.947 H22 YI4 57 YI4 H23 H23 H 0 1 N N N 15.787 5.164 26.115 0.613 1.980 -1.953 H23 YI4 58 YI4 H24 H24 H 0 1 N N N 11.451 4.657 26.203 1.537 -0.538 0.767 H24 YI4 59 YI4 H25 H25 H 0 1 N N N 12.108 5.784 24.968 2.208 0.716 1.838 H25 YI4 60 YI4 H26 H26 H 0 1 N N N 12.290 4.010 24.753 0.467 0.701 1.468 H26 YI4 61 YI4 H27 H27 H 0 1 N N N 12.479 5.896 27.743 2.617 3.034 0.919 H27 YI4 62 YI4 H28 H28 H 0 1 N N N 14.220 5.731 28.152 1.722 3.511 -0.548 H28 YI4 63 YI4 H29 H29 H 0 1 N N N 14.206 7.957 27.831 0.495 2.423 2.033 H29 YI4 64 YI4 H30 H30 H 0 1 N N N 12.748 7.913 26.783 0.448 4.115 1.500 H30 YI4 65 YI4 H31 H31 H 0 1 N N N 14.108 8.560 25.136 -1.660 2.777 1.050 H31 YI4 66 YI4 H32 H32 H 0 1 N N N 16.452 8.871 25.313 -0.123 3.990 -1.287 H32 YI4 67 YI4 H33 H33 H 0 1 N N N 15.728 9.179 26.928 -1.872 3.659 -1.293 H33 YI4 68 YI4 H35 H35 H 0 1 N N N 16.891 6.488 26.574 -2.062 5.289 0.765 H35 YI4 69 YI4 H36 H36 H 0 1 N N N 18.631 7.400 28.064 0.282 6.173 -0.949 H36 YI4 70 YI4 H37 H37 H 0 1 N N N 17.941 9.121 27.818 -0.695 7.188 0.282 H37 YI4 71 YI4 H39 H39 H 0 1 N N N 14.861 5.723 22.787 -1.559 -0.404 -0.787 H39 YI4 72 YI4 H40 H40 H 0 1 N N N 14.804 8.717 22.973 -3.030 1.769 0.976 H40 YI4 73 YI4 H41 H41 H 0 1 N N N 12.924 6.618 20.054 -5.143 -0.419 2.347 H41 YI4 74 YI4 H42 H42 H 0 1 N N N 14.410 5.793 20.635 -5.170 1.193 1.589 H42 YI4 75 YI4 H43 H43 H 0 1 N N N 15.728 6.683 18.856 -7.166 -0.309 1.017 H43 YI4 76 YI4 H44 H44 H 0 1 N N N 14.210 5.021 18.239 -6.461 1.457 -0.436 H44 YI4 77 YI4 H45 H45 H 0 1 N N N 14.750 10.023 21.231 -2.534 -1.609 -0.273 H45 YI4 78 YI4 H46 H46 H 0 1 N N N 13.195 9.627 20.425 -3.421 -2.245 1.135 H46 YI4 79 YI4 H47 H47 H 0 1 N N N 14.665 10.419 18.707 -4.559 -1.496 -1.597 H47 YI4 80 YI4 H48 H48 H 0 1 N N N 16.596 10.107 19.979 -3.675 -3.702 -1.321 H48 YI4 81 YI4 H49 H49 H 0 1 N N N 13.566 7.530 16.482 -6.553 -3.725 -0.011 H49 YI4 82 YI4 H50 H50 H 0 1 N N N 14.426 10.018 15.753 -8.248 -2.642 1.787 H50 YI4 83 YI4 H51 H51 H 0 1 N N N 13.020 10.342 16.823 -8.363 -1.295 0.628 H51 YI4 84 YI4 H52 H52 H 0 1 N N N 12.409 10.004 14.613 -10.076 -2.921 0.275 H52 YI4 85 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YI4 O04 C33 SING N N 1 YI4 C33 C32 SING N N 2 YI4 C32 C02 DOUB N Z 3 YI4 O01 C01 SING N N 4 YI4 C02 C01 SING N N 5 YI4 C02 C03 SING N N 6 YI4 C01 C10 SING N N 7 YI4 C03 O02 SING N N 8 YI4 C03 C04 SING N N 9 YI4 C10 C05 SING N N 10 YI4 C04 C05 SING N N 11 YI4 C05 C06 DOUB N Z 12 YI4 C06 C07 SING N N 13 YI4 C07 C08 DOUB N E 14 YI4 C15 C14 SING N N 15 YI4 C15 C16 SING N N 16 YI4 C08 C14 SING N N 17 YI4 C08 C09 SING N N 18 YI4 C14 C13 SING N N 19 YI4 C18 C13 SING N N 20 YI4 C16 C17 SING N N 21 YI4 C09 C28 SING N N 22 YI4 C09 C11 SING N N 23 YI4 C28 C29 SING N N 24 YI4 C13 C17 SING N N 25 YI4 C13 C12 SING N N 26 YI4 C27 C25 SING N N 27 YI4 C29 C30 DOUB N N 28 YI4 C17 C20 SING N N 29 YI4 C24 C25 SING N N 30 YI4 C24 C23 SING N N 31 YI4 C11 C12 SING N N 32 YI4 C22 C23 SING N N 33 YI4 C22 C20 SING N N 34 YI4 C25 O03 SING N N 35 YI4 C25 C26 SING N N 36 YI4 C20 C21 SING N N 37 YI4 O03 H1 SING N N 38 YI4 C26 H2 SING N N 39 YI4 C26 H3 SING N N 40 YI4 C26 H4 SING N N 41 YI4 C27 H5 SING N N 42 YI4 C27 H6 SING N N 43 YI4 C27 H7 SING N N 44 YI4 C24 H8 SING N N 45 YI4 C24 H9 SING N N 46 YI4 C23 H10 SING N N 47 YI4 C23 H11 SING N N 48 YI4 C22 H12 SING N N 49 YI4 C22 H13 SING N N 50 YI4 C20 H14 SING N N 51 YI4 C21 H15 SING N N 52 YI4 C21 H16 SING N N 53 YI4 C21 H17 SING N N 54 YI4 C17 H18 SING N N 55 YI4 C16 H19 SING N N 56 YI4 C16 H20 SING N N 57 YI4 C15 H21 SING N N 58 YI4 C15 H22 SING N N 59 YI4 C14 H23 SING N N 60 YI4 C18 H24 SING N N 61 YI4 C18 H25 SING N N 62 YI4 C18 H26 SING N N 63 YI4 C12 H27 SING N N 64 YI4 C12 H28 SING N N 65 YI4 C11 H29 SING N N 66 YI4 C11 H30 SING N N 67 YI4 C09 H31 SING N N 68 YI4 C28 H32 SING N N 69 YI4 C28 H33 SING N N 70 YI4 C29 H35 SING N N 71 YI4 C30 H36 SING N N 72 YI4 C30 H37 SING N N 73 YI4 C07 H39 SING N N 74 YI4 C06 H40 SING N N 75 YI4 C10 H41 SING N N 76 YI4 C10 H42 SING N N 77 YI4 C01 H43 SING N N 78 YI4 O01 H44 SING N N 79 YI4 C04 H45 SING N N 80 YI4 C04 H46 SING N N 81 YI4 C03 H47 SING N N 82 YI4 O02 H48 SING N N 83 YI4 C32 H49 SING N N 84 YI4 C33 H50 SING N N 85 YI4 C33 H51 SING N N 86 YI4 O04 H52 SING N N 87 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YI4 SMILES ACDLabs 12.01 "OC3C(=C\CO)\C(O)C\C(=C\C=C1/C(C/C=C)CCC2(C)C(C(C)CCCC(O)(C)C)CCC12)C3" YI4 InChI InChI 1.03 "InChI=1S/C31H50O4/c1-6-8-23-14-17-31(5)26(21(2)9-7-16-30(3,4)35)12-13-27(31)24(23)11-10-22-19-28(33)25(15-18-32)29(34)20-22/h6,10-11,15,21,23,26-29,32-35H,1,7-9,12-14,16-20H2,2-5H3/b22-10-,24-11+,25-15+/t21-,23-,26-,27+,28-,29-,31-/m1/s1" YI4 InChIKey InChI 1.03 VQPYCEUJPLIUFQ-ZVOFGSMJSA-N YI4 SMILES_CANONICAL CACTVS 3.370 "C[C@H](CCCC(C)(C)O)[C@H]1CC[C@H]2/C(=C/C=C3C[C@@H](O)C(=CCO)[C@H](O)C3)[C@@H](CC[C@]12C)CC=C" YI4 SMILES CACTVS 3.370 "C[CH](CCCC(C)(C)O)[CH]1CC[CH]2C(=CC=C3C[CH](O)C(=CCO)[CH](O)C3)[CH](CC[C]12C)CC=C" YI4 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@H](CCCC(C)(C)O)[C@H]1CC[C@@H]\2[C@@]1(CC[C@H](/C2=C\C=C3C[C@H](C(=CCO)[C@@H](C3)O)O)CC=C)C" YI4 SMILES "OpenEye OEToolkits" 1.7.6 "CC(CCCC(C)(C)O)C1CCC2C1(CCC(C2=CC=C3CC(C(=CCO)C(C3)O)O)CC=C)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YI4 "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,2Z,3R,5E,7E,9beta,17beta)-2-(2-hydroxyethylidene)-17-[(2R)-6-hydroxy-6-methylheptan-2-yl]-9-(prop-2-en-1-yl)-9,10-secoestra-5,7-diene-1,3-diol" YI4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(1R,3R)-5-[(2E)-2-[(1R,3aR,5S,7aR)-7a-methyl-1-[(2R)-6-methyl-6-oxidanyl-heptan-2-yl]-5-prop-2-enyl-2,3,3a,5,6,7-hexahydro-1H-inden-4-ylidene]ethylidene]-2-(2-oxidanylethylidene)cyclohexane-1,3-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YI4 "Create component" 2012-06-06 PDBJ YI4 "Initial release" 2013-05-22 RCSB #