data_YI9 # _chem_comp.id YI9 _chem_comp.name "6-(octylamino)pyrimidine-2,4(3H,5H)-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H21 N3 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-02-03 _chem_comp.pdbx_modified_date 2023-10-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 239.314 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YI9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8G05 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YI9 C10 C1 C 0 1 N N N 108.131 128.538 116.185 2.512 0.448 -0.006 C10 YI9 1 YI9 C15 C2 C 0 1 N N N 106.575 129.932 117.173 4.005 -1.330 -0.000 C15 YI9 2 YI9 C01 C3 C 0 1 N N N 114.431 123.833 112.052 -8.667 0.126 0.003 C01 YI9 3 YI9 C02 C4 C 0 1 N N N 115.037 123.572 113.421 -7.349 -0.651 0.003 C02 YI9 4 YI9 C03 C5 C 0 1 N N N 113.966 123.756 114.481 -6.177 0.332 0.001 C03 YI9 5 YI9 C04 C6 C 0 1 N N N 113.441 125.182 114.460 -4.859 -0.445 0.001 C04 YI9 6 YI9 C05 C7 C 0 1 N N N 111.924 125.190 114.395 -3.688 0.539 -0.001 C05 YI9 7 YI9 C06 C8 C 0 1 N N N 111.422 126.174 113.350 -2.370 -0.239 -0.002 C06 YI9 8 YI9 C07 C9 C 0 1 N N N 109.973 126.522 113.632 -1.197 0.745 -0.003 C07 YI9 9 YI9 C08 C10 C 0 1 N N N 109.833 127.157 115.009 0.120 -0.032 -0.004 C08 YI9 10 YI9 N09 N1 N 0 1 N N N 108.445 127.437 115.304 1.243 0.909 -0.005 N09 YI9 11 YI9 C11 C11 C 0 1 N N N 109.144 129.196 116.833 3.691 1.401 -0.001 C11 YI9 12 YI9 C12 C12 C 0 1 N N N 108.804 130.232 117.655 5.068 0.762 0.004 C12 YI9 13 YI9 O13 O1 O 0 1 N N N 109.653 130.816 118.231 6.077 1.434 0.008 O13 YI9 14 YI9 N14 N2 N 0 1 N N N 107.543 130.571 117.809 5.120 -0.589 0.004 N14 YI9 15 YI9 O16 O2 O 0 1 N N N 105.450 130.261 117.326 4.133 -2.540 0.001 O16 YI9 16 YI9 N17 N3 N 0 1 N N N 106.878 128.919 116.367 2.764 -0.840 -0.005 N17 YI9 17 YI9 H1 H1 H 0 1 N N N 115.202 123.701 111.278 -9.502 -0.575 0.005 H1 YI9 18 YI9 H2 H2 H 0 1 N N N 113.608 123.125 111.874 -8.719 0.754 0.893 H2 YI9 19 YI9 H3 H3 H 0 1 N N N 114.044 124.862 112.013 -8.720 0.752 -0.887 H3 YI9 20 YI9 H4 H4 H 0 1 N N N 115.424 122.543 113.463 -7.297 -1.278 0.893 H4 YI9 21 YI9 H5 H5 H 0 1 N N N 115.859 124.280 113.601 -7.298 -1.279 -0.887 H5 YI9 22 YI9 H6 H6 H 0 1 N N N 113.137 123.061 114.283 -6.230 0.959 -0.889 H6 YI9 23 YI9 H7 H7 H 0 1 N N N 114.395 123.542 115.471 -6.229 0.960 0.891 H7 YI9 24 YI9 H8 H8 H 0 1 N N N 113.844 125.703 113.579 -4.807 -1.071 0.891 H8 YI9 25 YI9 H9 H9 H 0 1 N N N 113.767 125.701 115.373 -4.808 -1.073 -0.889 H9 YI9 26 YI9 H10 H10 H 0 1 N N N 111.525 125.477 115.379 -3.740 1.165 -0.891 H10 YI9 27 YI9 H11 H11 H 0 1 N N N 111.571 124.181 114.136 -3.739 1.166 0.888 H11 YI9 28 YI9 H12 H12 H 0 1 N N N 111.501 125.720 112.351 -2.317 -0.865 0.889 H12 YI9 29 YI9 H13 H13 H 0 1 N N N 112.032 127.089 113.386 -2.318 -0.867 -0.891 H13 YI9 30 YI9 H14 H14 H 0 1 N N N 109.616 127.230 112.869 -1.250 1.371 -0.894 H14 YI9 31 YI9 H15 H15 H 0 1 N N N 109.367 125.605 113.593 -1.249 1.373 0.886 H15 YI9 32 YI9 H16 H16 H 0 1 N N N 110.231 126.467 115.767 0.173 -0.659 0.887 H16 YI9 33 YI9 H17 H17 H 0 1 N N N 110.404 128.097 115.033 0.172 -0.660 -0.893 H17 YI9 34 YI9 H18 H18 H 0 1 N N N 107.717 126.879 114.906 1.074 1.865 -0.006 H18 YI9 35 YI9 H19 H19 H 0 1 N N N 109.680 128.454 117.444 3.616 2.038 -0.882 H19 YI9 36 YI9 H20 H20 H 0 1 N N N 109.821 129.596 116.064 3.610 2.038 0.879 H20 YI9 37 YI9 H21 H21 H 0 1 N N N 107.311 131.328 118.420 5.984 -1.030 0.008 H21 YI9 38 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YI9 C01 C02 SING N N 1 YI9 C06 C07 SING N N 2 YI9 C06 C05 SING N N 3 YI9 C02 C03 SING N N 4 YI9 C07 C08 SING N N 5 YI9 C05 C04 SING N N 6 YI9 C04 C03 SING N N 7 YI9 C08 N09 SING N N 8 YI9 N09 C10 SING N N 9 YI9 C10 N17 DOUB N N 10 YI9 C10 C11 SING N N 11 YI9 N17 C15 SING N N 12 YI9 C11 C12 SING N N 13 YI9 C15 O16 DOUB N N 14 YI9 C15 N14 SING N N 15 YI9 C12 N14 SING N N 16 YI9 C12 O13 DOUB N N 17 YI9 C01 H1 SING N N 18 YI9 C01 H2 SING N N 19 YI9 C01 H3 SING N N 20 YI9 C02 H4 SING N N 21 YI9 C02 H5 SING N N 22 YI9 C03 H6 SING N N 23 YI9 C03 H7 SING N N 24 YI9 C04 H8 SING N N 25 YI9 C04 H9 SING N N 26 YI9 C05 H10 SING N N 27 YI9 C05 H11 SING N N 28 YI9 C06 H12 SING N N 29 YI9 C06 H13 SING N N 30 YI9 C07 H14 SING N N 31 YI9 C07 H15 SING N N 32 YI9 C08 H16 SING N N 33 YI9 C08 H17 SING N N 34 YI9 N09 H18 SING N N 35 YI9 C11 H19 SING N N 36 YI9 C11 H20 SING N N 37 YI9 N14 H21 SING N N 38 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YI9 SMILES ACDLabs 12.01 "O=C1N=C(NCCCCCCCC)CC(=O)N1" YI9 InChI InChI 1.06 "InChI=1S/C12H21N3O2/c1-2-3-4-5-6-7-8-13-10-9-11(16)15-12(17)14-10/h2-9H2,1H3,(H2,13,14,15,16,17)" YI9 InChIKey InChI 1.06 PNPWQWFLXGGIRQ-UHFFFAOYSA-N YI9 SMILES_CANONICAL CACTVS 3.385 "CCCCCCCCNC1=NC(=O)NC(=O)C1" YI9 SMILES CACTVS 3.385 "CCCCCCCCNC1=NC(=O)NC(=O)C1" YI9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCCCNC1=NC(=O)NC(=O)C1" YI9 SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCCCCNC1=NC(=O)NC(=O)C1" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YI9 "SYSTEMATIC NAME" ACDLabs 12.01 "6-(octylamino)pyrimidine-2,4(3H,5H)-dione" YI9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "6-(octylamino)-5~{H}-pyrimidine-2,4-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YI9 "Create component" 2023-02-03 RCSB YI9 "Initial release" 2023-11-01 RCSB #